© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2136 |
| Gene name | |
| Location | Contig_15:14487..16011 |
| Strand | - |
| Gene length (bp) | 1524 |
| Transcript length (bp) | 1413 |
| Coding sequence length (bp) | 1413 |
| Protein length (aa) | 471 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07571 | TAF6_C | TAF6 C-terminal HEAT repeat domain | 4.5E-28 | 284 | 375 |
| PF02969 | TAF | TATA box binding protein associated factor (TAF) | 8.1E-23 | 11 | 74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74462|TAF6_SCHPO | Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 | 11 | 397 | 5.0E-120 |
| sp|P53040|TAF6_YEAST | Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 | 11 | 464 | 1.0E-91 |
| sp|Q9MAU3|TAF6_ARATH | Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 | 15 | 385 | 5.0E-75 |
| sp|Q91857|TAF6_XENLA | Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 | 11 | 376 | 2.0E-58 |
| sp|P49848|TAF6_HUMAN | Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 | 2 | 375 | 2.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74462|TAF6_SCHPO | Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 | 11 | 397 | 5.0E-120 |
| sp|P53040|TAF6_YEAST | Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 | 11 | 464 | 1.0E-91 |
| sp|Q9MAU3|TAF6_ARATH | Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 | 15 | 385 | 5.0E-75 |
| sp|Q91857|TAF6_XENLA | Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 | 11 | 376 | 2.0E-58 |
| sp|P49848|TAF6_HUMAN | Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 | 2 | 375 | 2.0E-58 |
| sp|Q62311|TAF6_MOUSE | Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=1 SV=1 | 2 | 375 | 6.0E-58 |
| sp|Q63801|TAF6_RAT | Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=1 SV=1 | 2 | 375 | 7.0E-58 |
| sp|F4HVA6|TAF6B_ARATH | Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1 | 15 | 371 | 8.0E-54 |
| sp|P49847|TAF6_DROME | Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2 | 13 | 385 | 2.0E-50 |
| sp|Q8R2K4|TAF6L_MOUSE | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1 | 15 | 370 | 4.0E-22 |
| sp|Q9Y6J9|TAF6L_HUMAN | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1 | 15 | 390 | 6.0E-22 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | Yes |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | Yes |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3966 | 0.7977 | 0.0576 | 0.0125 | 0.0553 | 0.0049 | 0.0752 | 0.1149 | 0.0779 | 0.001 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 10 | (None) |
| Orthofinder run ID | 4 |
| Orthogroup | 1964 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2136 MVAENAKPKLLWNSENVKDVAESVGISNLNEEALKALTQDVEYRIGQVIIEALRLMRAARRTTLTVNDVSHALRV LDVEPLFGYDSTRPLRYGEASLGPGQPLFYIEDEEVDFEKLINAPLPKVPRDMNFTAHWLAIEGVQPSIPQNPTT VESRSQDLLPKGPGANPALNALAGNDNLSVKPSVKHIVSKELILYFDKIQAAILDDNPDEEVVRLRQAALGSVRD DPGLHQLIPYFINFIMDRVTHHLDDTFILKQMMELTHALIENKSLFLDPYASSLSAPALTCLMARKLGTEDGVEA LREQYELRQLAASLVGRIARKYASSNTLLRPKLTRTCLKYFLNPTKPPAVLYGAVYGLLEAGGPEAIRVLVLRNL AAFDSGILQPLKDKSDGGIDYEMLVQGLVQAVASLAYRTEGGGPAVAANGAGGRASEAETAELKEFIGPTVGQRI AVSANNRGLVKTILAARLLE* |
| Coding | >Hirsu2|2136 ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC CGCGACATGAACTTCACCGCACACTGGCTCGCCATCGAAGGCGTCCAGCCGTCGATACCGCAGAACCCGACGACG GTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCCGGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAAC GACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTCAGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAG GCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTGCGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGAC GACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAACTTCATCATGGACCGCGTCACGCACCATCTCGACGAC ACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCCCTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTAC GCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATGGCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCC CTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCGCTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCC AACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTCAAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTA CTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGGCCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTG GCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGACAAGTCGGACGGCGGCATCGACTACGAGATGCTCGTC CAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGCACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGA GCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTTAAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATC GCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATCCTGGCCGCCCGTCTCCTGGAGTGA |
| Transcript | >Hirsu2|2136 ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC CGCGACATGAACTTCACCGCACACTGGCTCGCCATCGAAGGCGTCCAGCCGTCGATACCGCAGAACCCGACGACG GTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCCGGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAAC GACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTCAGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAG GCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTGCGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGAC GACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAACTTCATCATGGACCGCGTCACGCACCATCTCGACGAC ACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCCCTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTAC GCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATGGCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCC CTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCGCTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCC AACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTCAAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTA CTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGGCCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTG GCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGACAAGTCGGACGGCGGCATCGACTACGAGATGCTCGTC CAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGCACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGA GCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTTAAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATC GCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATCCTGGCCGCCCGTCTCCTGGAGTGA |
| Gene | >Hirsu2|2136 ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC CGCGACATGAACTTCACCGGTACGTTTTTTTGGGGGGGGGGCGAGGCCGAGCAAGGCCGAGCACTCCAACTTCGT CCGCCCGCCCGTGGACGGGTTGCCTTGGGGAGATCACGTGCTTACTTTCTTGCAGCACACTGGCTCGCCATCGAA GGCGTCCAGCCGTCGATACCGCAGAACCCGACGACGGTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCC GGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAACGACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTC AGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAGGCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTG CGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGACGACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAAC TTCATCATGGACCGCGTCACGCACCATCTCGACGACACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCC CTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTACGCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATG GCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCCCTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCG CTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCCAACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTC AAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTACTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGG CCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTGGCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGAC AAGTCGGACGGCGGCATCGACTACGAGATGCTCGTCCAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGC ACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGAGCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTT AAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATCGCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATC CTGGCCGCCCGTCTCCTGGAGTGA |