Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2136
Gene name
LocationContig_15:14487..16011
Strand-
Gene length (bp)1524
Transcript length (bp)1413
Coding sequence length (bp)1413
Protein length (aa) 471

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07571 TAF6_C TAF6 C-terminal HEAT repeat domain 4.5E-28 284 375
PF02969 TAF TATA box binding protein associated factor (TAF) 8.1E-23 11 74

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 11 397 5.0E-120
sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 11 464 1.0E-91
sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 15 385 5.0E-75
sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 11 376 2.0E-58
sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 2 375 2.0E-58
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 11 397 5.0E-120
sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 11 464 1.0E-91
sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 15 385 5.0E-75
sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 11 376 2.0E-58
sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 2 375 2.0E-58
sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=1 SV=1 2 375 6.0E-58
sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=1 SV=1 2 375 7.0E-58
sp|F4HVA6|TAF6B_ARATH Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1 15 371 8.0E-54
sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2 13 385 2.0E-50
sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1 15 370 4.0E-22
sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1 15 390 6.0E-22
[Show less]

GO

GO Term Description Terminal node
GO:0006352 DNA-templated transcription, initiation Yes
GO:0006367 transcription initiation from RNA polymerase II promoter Yes
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009987 cellular process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044238 primary metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0090304 nucleic acid metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 58 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2136
MVAENAKPKLLWNSENVKDVAESVGISNLNEEALKALTQDVEYRIGQVIIEALRLMRAARRTTLTVNDVSHALRV
LDVEPLFGYDSTRPLRYGEASLGPGQPLFYIEDEEVDFEKLINAPLPKVPRDMNFTAHWLAIEGVQPSIPQNPTT
VESRSQDLLPKGPGANPALNALAGNDNLSVKPSVKHIVSKELILYFDKIQAAILDDNPDEEVVRLRQAALGSVRD
DPGLHQLIPYFINFIMDRVTHHLDDTFILKQMMELTHALIENKSLFLDPYASSLSAPALTCLMARKLGTEDGVEA
LREQYELRQLAASLVGRIARKYASSNTLLRPKLTRTCLKYFLNPTKPPAVLYGAVYGLLEAGGPEAIRVLVLRNL
AAFDSGILQPLKDKSDGGIDYEMLVQGLVQAVASLAYRTEGGGPAVAANGAGGRASEAETAELKEFIGPTVGQRI
AVSANNRGLVKTILAARLLE*
Coding >Hirsu2|2136
ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC
ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC
GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC
CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC
CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC
CGCGACATGAACTTCACCGCACACTGGCTCGCCATCGAAGGCGTCCAGCCGTCGATACCGCAGAACCCGACGACG
GTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCCGGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAAC
GACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTCAGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAG
GCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTGCGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGAC
GACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAACTTCATCATGGACCGCGTCACGCACCATCTCGACGAC
ACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCCCTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTAC
GCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATGGCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCC
CTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCGCTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCC
AACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTCAAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTA
CTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGGCCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTG
GCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGACAAGTCGGACGGCGGCATCGACTACGAGATGCTCGTC
CAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGCACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGA
GCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTTAAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATC
GCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATCCTGGCCGCCCGTCTCCTGGAGTGA
Transcript >Hirsu2|2136
ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC
ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC
GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC
CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC
CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC
CGCGACATGAACTTCACCGCACACTGGCTCGCCATCGAAGGCGTCCAGCCGTCGATACCGCAGAACCCGACGACG
GTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCCGGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAAC
GACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTCAGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAG
GCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTGCGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGAC
GACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAACTTCATCATGGACCGCGTCACGCACCATCTCGACGAC
ACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCCCTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTAC
GCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATGGCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCC
CTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCGCTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCC
AACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTCAAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTA
CTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGGCCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTG
GCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGACAAGTCGGACGGCGGCATCGACTACGAGATGCTCGTC
CAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGCACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGA
GCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTTAAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATC
GCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATCCTGGCCGCCCGTCTCCTGGAGTGA
Gene >Hirsu2|2136
ATGGTGGCCGAGAACGCCAAGCCGAAGCTCCTCTGGAACTCGGAAAACGTCAAGGATGTGGCCGAGTCCGTGGGC
ATCAGCAACCTGAACGAGGAGGCGCTCAAGGCGCTGACGCAGGACGTCGAGTACCGCATCGGCCAGGTCATCATC
GAGGCCCTGCGCCTGATGCGCGCCGCCCGCCGGACGACGCTGACGGTCAACGACGTGTCGCACGCGTTGCGTGTC
CTCGACGTCGAGCCGCTCTTCGGCTACGACTCGACGCGCCCGCTGCGCTACGGCGAGGCCAGTCTCGGGCCCGGC
CAGCCGCTTTTCTACATCGAGGACGAGGAGGTCGACTTTGAGAAGCTCATCAACGCGCCTCTGCCCAAGGTTCCC
CGCGACATGAACTTCACCGGTACGTTTTTTTGGGGGGGGGGCGAGGCCGAGCAAGGCCGAGCACTCCAACTTCGT
CCGCCCGCCCGTGGACGGGTTGCCTTGGGGAGATCACGTGCTTACTTTCTTGCAGCACACTGGCTCGCCATCGAA
GGCGTCCAGCCGTCGATACCGCAGAACCCGACGACGGTCGAGTCCCGGTCGCAGGATCTGCTGCCCAAGGGCCCC
GGCGCCAACCCGGCCTTGAACGCGCTCGCCGGCAACGACAACCTTTCGGTCAAGCCGTCCGTCAAGCACATCGTC
AGCAAGGAGCTCATCCTGTACTTTGACAAGATCCAGGCCGCGATCCTCGACGATAACCCCGACGAGGAGGTGGTG
CGGCTGCGGCAGGCGGCGCTGGGCTCGGTGCGGGACGACCCGGGCCTGCACCAGCTGATCCCCTACTTCATCAAC
TTCATCATGGACCGCGTCACGCACCATCTCGACGACACCTTCATCCTGAAGCAGATGATGGAGCTGACGCACGCC
CTCATCGAGAACAAGAGCCTCTTCCTCGACCCCTACGCCAGCTCGCTCTCGGCTCCGGCCCTCACCTGCCTGATG
GCGCGCAAGCTGGGCACCGAGGACGGCGTCGAGGCCCTCCGCGAGCAGTACGAGCTGCGCCAGCTGGCCGCCTCG
CTCGTCGGCCGCATCGCCCGCAAATACGCCTCGTCCAACACGCTGCTGCGGCCGAAGCTGACGCGCACCTGTCTC
AAGTACTTCCTCAACCCGACCAAGCCCCCCGCCGTACTGTACGGCGCCGTCTACGGCCTGCTCGAGGCCGGCGGG
CCCGAGGCCATCCGCGTCCTGGTCCTGCGCAACCTGGCCGCTTTCGACTCCGGCATCCTGCAGCCCCTCAAGGAC
AAGTCGGACGGCGGCATCGACTACGAGATGCTCGTCCAGGGGCTCGTCCAGGCCGTCGCGTCGCTGGCCTACCGC
ACCGAGGGCGGCGGCCCCGCCGTTGCCGCCAACGGAGCGGGCGGCAGGGCGTCCGAGGCCGAGACGGCCGAGCTT
AAGGAGTTCATCGGCCCCACTGTCGGCCAGCGCATCGCCGTGTCCGCCAACAACCGGGGCCTGGTCAAGACGATC
CTGGCCGCCCGTCTCCTGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail