Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2135
Gene name
LocationContig_15:13224..13991
Strand+
Gene length (bp)767
Transcript length (bp)567
Coding sequence length (bp)567
Protein length (aa) 189

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit 3.4E-18 61 178

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 33 185 9.0E-29
sp|Q04487|SHH3_YEAST Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 49 185 4.0E-15
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1 25 160 2.0E-12
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1 25 160 3.0E-12
sp|D0VWV4|C560_PIG Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Sus scrofa GN=SDHC PE=1 SV=2 63 185 5.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 33 185 9.0E-29
sp|Q04487|SHH3_YEAST Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 49 185 4.0E-15
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1 25 160 2.0E-12
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1 25 160 3.0E-12
sp|D0VWV4|C560_PIG Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Sus scrofa GN=SDHC PE=1 SV=2 63 185 5.0E-12
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2 62 185 8.0E-12
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Mus musculus GN=Sdhc PE=1 SV=1 63 166 9.0E-12
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV=1 64 185 4.0E-11
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Homo sapiens GN=SDHC PE=1 SV=1 63 168 4.0E-11
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana GN=SDH3 PE=3 SV=1 57 158 4.0E-08
sp|P33421|SDH3_YEAST Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH3 PE=1 SV=1 54 184 1.0E-07
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GO

GO Term Description Terminal node
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Yes
GO:0016491 oxidoreductase activity No
GO:0003674 molecular_function No
GO:0003824 catalytic activity No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.0624 0.0543 0.0206 0.0902 0.9645 0.0995 0.0397 0.0345 0.0485 0.0121

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 88 110 22
2 125 147 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

Gene cluster ID Type of secondary metabolism gene
Cluster 10 (None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6053
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2727
Ophiocordyceps australis map64 (Brazil) OphauB2|6871
Ophiocordyceps camponoti-floridani Ophcf2|01588
Ophiocordyceps subramaniannii Hirsu2|2135 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2135
MISQRVGVAALRRGATKPSAFFNQNVPKLILASSMSTTQTRPVATTKISNDDGHQILVKQRLNRPVSPHLGIYKM
EQTWFGASAWTRITGCALSGTAYLYFVSYLVAPLLGLHIESASLAASFAALPLLVKGGIKFALGFPFAFHFFNGL
KHLVYDLGKGFAKPTIKKGEMALWASSILGGLYLAFGL*
Coding >Hirsu2|2135
ATGATCTCGCAACGGGTCGGCGTCGCCGCCCTGCGAAGAGGCGCGACGAAGCCAAGCGCCTTCTTCAACCAGAAC
GTCCCGAAGCTCATCCTCGCCTCGTCCATGTCCACGACCCAAACTCGCCCCGTGGCGACGACGAAAATCTCCAAC
GATGACGGCCACCAGATCCTCGTCAAGCAGCGGCTGAACCGCCCCGTGTCGCCGCACCTCGGCATCTACAAGATG
GAGCAGACGTGGTTCGGCGCCTCGGCCTGGACTCGCATCACCGGCTGCGCCCTCTCCGGCACCGCCTACCTCTAC
TTCGTCTCCTACCTTGTCGCGCCCCTGCTGGGCCTGCACATCGAGAGCGCCAGCTTGGCCGCCTCCTTCGCCGCC
CTGCCCCTGCTCGTCAAGGGCGGCATCAAGTTCGCCCTCGGCTTCCCCTTCGCCTTCCACTTCTTCAACGGCCTC
AAGCACCTCGTCTATGACCTCGGCAAGGGGTTCGCCAAGCCCACCATCAAGAAGGGCGAGATGGCCCTCTGGGCC
TCGAGCATCCTCGGCGGCCTGTACCTCGCCTTCGGCCTGTAG
Transcript >Hirsu2|2135
ATGATCTCGCAACGGGTCGGCGTCGCCGCCCTGCGAAGAGGCGCGACGAAGCCAAGCGCCTTCTTCAACCAGAAC
GTCCCGAAGCTCATCCTCGCCTCGTCCATGTCCACGACCCAAACTCGCCCCGTGGCGACGACGAAAATCTCCAAC
GATGACGGCCACCAGATCCTCGTCAAGCAGCGGCTGAACCGCCCCGTGTCGCCGCACCTCGGCATCTACAAGATG
GAGCAGACGTGGTTCGGCGCCTCGGCCTGGACTCGCATCACCGGCTGCGCCCTCTCCGGCACCGCCTACCTCTAC
TTCGTCTCCTACCTTGTCGCGCCCCTGCTGGGCCTGCACATCGAGAGCGCCAGCTTGGCCGCCTCCTTCGCCGCC
CTGCCCCTGCTCGTCAAGGGCGGCATCAAGTTCGCCCTCGGCTTCCCCTTCGCCTTCCACTTCTTCAACGGCCTC
AAGCACCTCGTCTATGACCTCGGCAAGGGGTTCGCCAAGCCCACCATCAAGAAGGGCGAGATGGCCCTCTGGGCC
TCGAGCATCCTCGGCGGCCTGTACCTCGCCTTCGGCCTGTAG
Gene >Hirsu2|2135
ATGATCTCGCAACGGGTCGGCGTCGCCGCCCTGCGAAGAGGTAACCACGCTGTCCGGAAGAGAGATATGTCGTTC
TCACGCGGCGAGCTGGCGGGCTGACCGGATGGCCGTGTGTCGTCGTTTCCTGCCAGGCGCGACGAAGCCAAGCGC
CTTCTTCAACCAGAACGTCCCGAAGCTCATCCTCGCCTCGTCCATGTCCACGACCCAAACTCGGTGAGGGAAATC
CTCCCGCGCTCTTTGTTTTTTTTGTTTCCACGATCCCTCCATCCGCCGGTTCTCGCGCCGGAAGACGGAGCCCAA
GGCTGACGAGGGCCCGATCCAGCCCCGTGGCGACGACGAAAATCTCCAACGATGACGGCCACCAGATCCTCGTCA
AGCAGCGGCTGAACCGCCCCGTGTCGCCGCACCTCGGCATCTACAAGATGGAGCAGACGTGGTTCGGCGCCTCGG
CCTGGACTCGCATCACCGGCTGCGCCCTCTCCGGCACCGCCTACCTCTACTTCGTCTCCTACCTTGTCGCGCCCC
TGCTGGGCCTGCACATCGAGAGCGCCAGCTTGGCCGCCTCCTTCGCCGCCCTGCCCCTGCTCGTCAAGGGCGGCA
TCAAGTTCGCCCTCGGCTTCCCCTTCGCCTTCCACTTCTTCAACGGCCTCAAGCACCTCGTCTATGACCTCGGCA
AGGGGTTCGCCAAGCCCACCATCAAGAAGGGCGAGATGGCCCTCTGGGCCTCGAGCATCCTCGGCGGCCTGTACC
TCGCCTTCGGCCTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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