© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2126 |
| Gene name | |
| Location | Contig_1498:2757..4625 |
| Strand | + |
| Gene length (bp) | 1868 |
| Transcript length (bp) | 1626 |
| Coding sequence length (bp) | 1626 |
| Protein length (aa) | 542 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 8.8E-89 | 46 | 476 |
| PF00324 | AA_permease | Amino acid permease | 5.5E-17 | 59 | 451 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50276|MUP1_YEAST | High-affinity methionine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MUP1 PE=1 SV=1 | 23 | 534 | 1.0E-178 |
| sp|P38734|MUP3_YEAST | Low-affinity methionine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MUP3 PE=1 SV=1 | 16 | 522 | 2.0E-68 |
| sp|Q9WTR6|XCT_MOUSE | Cystine/glutamate transporter OS=Mus musculus GN=Slc7a11 PE=1 SV=1 | 43 | 450 | 4.0E-36 |
| sp|P82251|BAT1_HUMAN | b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1 | 14 | 489 | 1.0E-35 |
| sp|Q9N1R6|BAT1_RABIT | b(0,+)-type amino acid transporter 1 OS=Oryctolagus cuniculus GN=SLC7A9 PE=1 SV=1 | 20 | 352 | 2.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50276|MUP1_YEAST | High-affinity methionine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MUP1 PE=1 SV=1 | 23 | 534 | 1.0E-178 |
| sp|P38734|MUP3_YEAST | Low-affinity methionine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MUP3 PE=1 SV=1 | 16 | 522 | 2.0E-68 |
| sp|Q9WTR6|XCT_MOUSE | Cystine/glutamate transporter OS=Mus musculus GN=Slc7a11 PE=1 SV=1 | 43 | 450 | 4.0E-36 |
| sp|P82251|BAT1_HUMAN | b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1 | 14 | 489 | 1.0E-35 |
| sp|Q9N1R6|BAT1_RABIT | b(0,+)-type amino acid transporter 1 OS=Oryctolagus cuniculus GN=SLC7A9 PE=1 SV=1 | 20 | 352 | 2.0E-35 |
| sp|Q9QXA6|BAT1_MOUSE | b(0,+)-type amino acid transporter 1 OS=Mus musculus GN=Slc7a9 PE=1 SV=1 | 14 | 352 | 3.0E-34 |
| sp|P82252|BAT1_RAT | b(0,+)-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a9 PE=1 SV=1 | 14 | 352 | 2.0E-32 |
| sp|Q8BGK6|YLAT2_MOUSE | Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=1 SV=1 | 12 | 503 | 3.0E-32 |
| sp|Q92536|YLAT2_HUMAN | Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3 | 19 | 518 | 2.0E-31 |
| sp|Q28I80|YLAT2_XENTR | Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1 | 18 | 452 | 4.0E-31 |
| sp|Q9Z1K8|YLAT1_MOUSE | Y+L amino acid transporter 1 OS=Mus musculus GN=Slc7a7 PE=1 SV=1 | 22 | 452 | 8.0E-31 |
| sp|Q59I64|YLAT2_DANRE | Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1 | 41 | 452 | 8.0E-31 |
| sp|A1L3M3|YLAT2_XENLA | Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1 | 23 | 452 | 1.0E-30 |
| sp|Q9R0S5|YLAT1_RAT | Y+L amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a7 PE=1 SV=1 | 11 | 531 | 1.0E-30 |
| sp|Q9UM01|YLAT1_HUMAN | Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2 | 43 | 452 | 1.0E-29 |
| sp|Q9UPY5|XCT_HUMAN | Cystine/glutamate transporter OS=Homo sapiens GN=SLC7A11 PE=1 SV=1 | 67 | 449 | 5.0E-29 |
| sp|Q5RAG7|XCT_PONAB | Cystine/glutamate transporter OS=Pongo abelii GN=SLC7A11 PE=2 SV=1 | 67 | 449 | 5.0E-29 |
| sp|Q01650|LAT1_HUMAN | Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2 | 20 | 486 | 5.0E-25 |
| sp|Q9WVR6|LAT2_RAT | Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1 | 20 | 525 | 1.0E-24 |
| sp|Q9QXW9|LAT2_MOUSE | Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1 | 21 | 529 | 7.0E-24 |
| sp|Q5RAE3|LAT2_PONAB | Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2 | 21 | 355 | 1.0E-23 |
| sp|Q9UHI5|LAT2_HUMAN | Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1 | 21 | 355 | 1.0E-23 |
| sp|P63116|AAA1_RAT | Asc-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a10 PE=2 SV=1 | 43 | 462 | 4.0E-23 |
| sp|P63115|AAA1_MOUSE | Asc-type amino acid transporter 1 OS=Mus musculus GN=Slc7a10 PE=1 SV=1 | 43 | 462 | 4.0E-23 |
| sp|Q9NS82|AAA1_HUMAN | Asc-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A10 PE=2 SV=1 | 20 | 538 | 4.0E-23 |
| sp|Q9N1Q4|LAT2_RABIT | Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1 | 43 | 486 | 7.0E-23 |
| sp|Q7YQK4|LAT1_RABIT | Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1 | 43 | 486 | 1.0E-22 |
| sp|Q9Z127|LAT1_MOUSE | Large neutral amino acids transporter small subunit 1 OS=Mus musculus GN=Slc7a5 PE=1 SV=2 | 43 | 491 | 2.0E-20 |
| sp|Q63016|LAT1_RAT | Large neutral amino acids transporter small subunit 1 OS=Rattus norvegicus GN=Slc7a5 PE=1 SV=2 | 43 | 486 | 4.0E-20 |
| sp|O34739|STET_BACSU | Serine/threonine exchanger SteT OS=Bacillus subtilis (strain 168) GN=steT PE=1 SV=1 | 43 | 369 | 2.0E-14 |
| sp|Q91WN3|S7A13_MOUSE | Solute carrier family 7 member 13 OS=Mus musculus GN=Slc7a13 PE=1 SV=1 | 43 | 463 | 6.0E-14 |
| sp|Q8TCU3|S7A13_HUMAN | Solute carrier family 7 member 13 OS=Homo sapiens GN=SLC7A13 PE=2 SV=1 | 60 | 454 | 5.0E-13 |
| sp|Q5RKI7|S7A13_RAT | Solute carrier family 7 member 13 OS=Rattus norvegicus GN=Slc7a13 PE=2 SV=1 | 43 | 463 | 2.0E-12 |
| sp|Q8X845|FRLA_ECO57 | Putative fructoselysine transporter FrlA OS=Escherichia coli O157:H7 GN=frlA PE=3 SV=2 | 39 | 369 | 2.0E-10 |
| sp|P45539|FRLA_ECOLI | Putative fructoselysine transporter FrlA OS=Escherichia coli (strain K12) GN=frlA PE=3 SV=2 | 39 | 369 | 2.0E-10 |
| sp|Q8MH63|LAT1N_HUMAN | Putative L-type amino acid transporter 1-like protein MLAS OS=Homo sapiens GN=SLC7A5P1 PE=5 SV=1 | 20 | 126 | 2.0E-08 |
| sp|P60066|ADIC_SALTY | Arginine/agmatine antiporter OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=adiC PE=1 SV=1 | 39 | 374 | 6.0E-06 |
| sp|P60065|ADIC_SALTI | Arginine/agmatine antiporter OS=Salmonella typhi GN=adiC PE=3 SV=1 | 39 | 374 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.12 | 0.0771 | 0.0349 | 0.3399 | 0.0771 | 0.0046 | 0.3654 | 0.6218 | 0.5743 | 0.0316 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 82 | 104 | 22 |
| 3 | 125 | 147 | 22 |
| 4 | 167 | 184 | 17 |
| 5 | 191 | 213 | 22 |
| 6 | 228 | 250 | 22 |
| 7 | 271 | 293 | 22 |
| 8 | 321 | 340 | 19 |
| 9 | 365 | 387 | 22 |
| 10 | 397 | 419 | 22 |
| 11 | 431 | 453 | 22 |
| 12 | 468 | 490 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1961 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2126 MDRVLAGLRVTKADEGVTVKGSDSASASHDTETGQLEVARENKRQIGIPSAALLIFNRTIGTAIFATPGTILSLS GSVGLSLFMWIAGMLIAVAGTAVYMELGTGLPRNGGEKNYLEYVYRRPRFLTTCLYTGYVLLLGWAAGNSVIFGE YILHAARVEVTRWNQRGIALACLTGAFLVHGVALKWGIRIQNFLGILKILVIVIIIIAPLFNLSKVRQNNNFSRP FDGTTASAYSVVTALYNVIWSFVGYSNANYALSETKNPTRTLKYAAPLGIGTISVLYILANVSYFAAVPREEILE SKRLVAASLFRNMFGEPAERALSVFVALSALGNVMSVIFSQGRLVQELGREGILPFSRLWASNRPFNAPLAGLFE HWLVTAITVLAPPAGDAYNFVLNLISYPLAIINVFVAGALIHLYRNRQSWNWNPPLKATLPVTIFFLLSNIYLVI APFVPPEEGNGIYENLPYWIHCVVGFGVIFAGGLYWLVWAVILPKIGRYELVRETTVDEIDGWERNVFYKRPLGD APRDGPLPSPADDSGK* |
| Coding | >Hirsu2|2126 ATGGATCGCGTCCTCGCAGGCTTGCGGGTCACCAAGGCCGACGAGGGCGTCACTGTCAAGGGCAGCGACTCGGCC TCGGCCAGCCACGACACCGAAACCGGACAGCTTGAAGTCGCGCGCGAGAACAAGCGCCAGATCGGCATCCCCTCC GCCGCCCTGCTCATCTTCAACCGCACCATCGGCACCGCCATCTTCGCCACGCCCGGCACCATCCTCTCGCTGTCC GGCAGCGTGGGCCTGTCGCTCTTCATGTGGATCGCCGGTATGCTCATCGCCGTCGCCGGCACCGCCGTCTACATG GAGCTCGGCACCGGTCTGCCGCGCAACGGCGGCGAGAAGAACTACCTCGAGTACGTCTACCGCCGGCCGCGCTTC CTCACCACCTGCCTCTACACCGGATACGTCCTCCTGCTCGGCTGGGCCGCCGGCAACTCCGTCATCTTCGGCGAG TACATCCTCCACGCCGCCCGCGTCGAAGTCACCCGATGGAACCAGCGCGGCATCGCCCTCGCCTGTCTTACCGGC GCCTTCCTCGTCCACGGCGTCGCTCTCAAGTGGGGCATCCGCATCCAGAACTTCCTCGGCATCCTCAAGATCCTC GTCATCGTCATCATCATCATCGCGCCCCTCTTCAACCTCTCCAAGGTCCGCCAGAACAACAACTTCTCCCGGCCC TTCGACGGCACCACCGCCAGCGCCTACAGCGTCGTCACCGCCCTCTACAACGTCATCTGGAGCTTCGTCGGCTAC AGCAACGCAAACTACGCCCTTAGCGAGACCAAGAACCCGACGCGCACCCTCAAGTATGCCGCCCCGCTCGGCATC GGCACCATCTCCGTCCTCTACATCCTCGCCAACGTCTCCTACTTCGCTGCCGTGCCCAGGGAGGAGATTCTCGAG TCCAAGCGCCTCGTCGCCGCCTCCCTCTTCCGCAACATGTTTGGCGAGCCGGCCGAGCGTGCCCTGTCCGTCTTC GTCGCCCTCTCCGCCCTGGGCAACGTCATGAGCGTCATCTTCTCCCAGGGCCGCCTGGTCCAGGAGCTGGGCCGC GAGGGCATTCTGCCCTTCTCCCGCCTCTGGGCCAGCAACCGACCCTTCAACGCCCCCTTGGCCGGCCTCTTCGAG CACTGGCTCGTGACCGCCATCACCGTCCTGGCACCGCCGGCCGGCGATGCGTACAACTTCGTCCTGAATCTCATC TCCTATCCTCTGGCCATCATCAACGTCTTCGTCGCTGGTGCTCTTATTCACCTGTACCGCAACCGGCAGAGCTGG AATTGGAACCCCCCACTGAAGGCCACCCTGCCCGTCACCATCTTCTTCCTTCTCAGCAACATCTATCTCGTCATC GCCCCCTTCGTCCCTCCCGAGGAAGGCAACGGAATCTATGAGAATCTGCCGTACTGGATCCACTGCGTGGTGGGC TTCGGCGTCATCTTTGCCGGCGGTCTCTACTGGCTGGTTTGGGCCGTCATCTTGCCCAAGATTGGGCGGTACGAG CTGGTGCGCGAGACGACCGTGGATGAGATCGACGGCTGGGAACGGAATGTCTTCTACAAGCGGCCGCTCGGAGAT GCCCCTCGCGACGGCCCGCTGCCCTCGCCGGCTGACGACAGCGGAAAATAA |
| Transcript | >Hirsu2|2126 ATGGATCGCGTCCTCGCAGGCTTGCGGGTCACCAAGGCCGACGAGGGCGTCACTGTCAAGGGCAGCGACTCGGCC TCGGCCAGCCACGACACCGAAACCGGACAGCTTGAAGTCGCGCGCGAGAACAAGCGCCAGATCGGCATCCCCTCC GCCGCCCTGCTCATCTTCAACCGCACCATCGGCACCGCCATCTTCGCCACGCCCGGCACCATCCTCTCGCTGTCC GGCAGCGTGGGCCTGTCGCTCTTCATGTGGATCGCCGGTATGCTCATCGCCGTCGCCGGCACCGCCGTCTACATG GAGCTCGGCACCGGTCTGCCGCGCAACGGCGGCGAGAAGAACTACCTCGAGTACGTCTACCGCCGGCCGCGCTTC CTCACCACCTGCCTCTACACCGGATACGTCCTCCTGCTCGGCTGGGCCGCCGGCAACTCCGTCATCTTCGGCGAG TACATCCTCCACGCCGCCCGCGTCGAAGTCACCCGATGGAACCAGCGCGGCATCGCCCTCGCCTGTCTTACCGGC GCCTTCCTCGTCCACGGCGTCGCTCTCAAGTGGGGCATCCGCATCCAGAACTTCCTCGGCATCCTCAAGATCCTC GTCATCGTCATCATCATCATCGCGCCCCTCTTCAACCTCTCCAAGGTCCGCCAGAACAACAACTTCTCCCGGCCC TTCGACGGCACCACCGCCAGCGCCTACAGCGTCGTCACCGCCCTCTACAACGTCATCTGGAGCTTCGTCGGCTAC AGCAACGCAAACTACGCCCTTAGCGAGACCAAGAACCCGACGCGCACCCTCAAGTATGCCGCCCCGCTCGGCATC GGCACCATCTCCGTCCTCTACATCCTCGCCAACGTCTCCTACTTCGCTGCCGTGCCCAGGGAGGAGATTCTCGAG TCCAAGCGCCTCGTCGCCGCCTCCCTCTTCCGCAACATGTTTGGCGAGCCGGCCGAGCGTGCCCTGTCCGTCTTC GTCGCCCTCTCCGCCCTGGGCAACGTCATGAGCGTCATCTTCTCCCAGGGCCGCCTGGTCCAGGAGCTGGGCCGC GAGGGCATTCTGCCCTTCTCCCGCCTCTGGGCCAGCAACCGACCCTTCAACGCCCCCTTGGCCGGCCTCTTCGAG CACTGGCTCGTGACCGCCATCACCGTCCTGGCACCGCCGGCCGGCGATGCGTACAACTTCGTCCTGAATCTCATC TCCTATCCTCTGGCCATCATCAACGTCTTCGTCGCTGGTGCTCTTATTCACCTGTACCGCAACCGGCAGAGCTGG AATTGGAACCCCCCACTGAAGGCCACCCTGCCCGTCACCATCTTCTTCCTTCTCAGCAACATCTATCTCGTCATC GCCCCCTTCGTCCCTCCCGAGGAAGGCAACGGAATCTATGAGAATCTGCCGTACTGGATCCACTGCGTGGTGGGC TTCGGCGTCATCTTTGCCGGCGGTCTCTACTGGCTGGTTTGGGCCGTCATCTTGCCCAAGATTGGGCGGTACGAG CTGGTGCGCGAGACGACCGTGGATGAGATCGACGGCTGGGAACGGAATGTCTTCTACAAGCGGCCGCTCGGAGAT GCCCCTCGCGACGGCCCGCTGCCCTCGCCGGCTGACGACAGCGGAAAATAA |
| Gene | >Hirsu2|2126 ATGGATCGCGTCCTCGCAGGCTTGCGGGTCACCAAGGCCGACGAGGGCGTCACTGTCAAGGGCAGCGACTCGGCC TCGGCCAGCCACGACACCGAAACCGGTCAGTTTTGCCTTGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCTGCGCC CTCTCGTACGCCTCAAGGCAGGCGGACCGGTGCGACAGCGTTGCTTTTCCTCTCGTGCTCCGAGACCCTCCCGCT GACGCTCGACTCCAGGACAGCTTGAAGTCGCGCGCGAGAACAAGCGCCAGATCGGCATCCCCTCCGCCGCCCTGC TCATCTTCAACCGCACCATCGGCACCGCCATCTTCGCCACGCCCGGCACCATCCTCTCGCTGTCCGGCAGCGTGG GCCTGTCGCTCTTCATGTGGATCGCCGGTATGCTCATCGCCGTCGCCGGCACCGCCGTCTACATGGAGCTCGGCA CCGGTCTGCCGCGCAACGGCGGCGAGAAGAACTACCTCGAGTACGTCTACCGCCGGCCGCGCTTCCTCACCACCT GCCTCTACACCGGATACGTCCTCCTGCTCGGCTGGGCCGCCGGCAACTCCGTCATCTTCGGCGAGTACATCCTCC ACGCCGCCCGCGTCGAAGTCACCCGATGGAACCAGCGCGGCATCGCCCTCGCCTGTCTTACCGGCGCCTTCCTCG TCCACGGCGTCGCTCTCAAGTGGGGCATCCGCATCCAGAACTTCCTCGGCATCCTCAAGATCCTCGTCATCGTCA TCATCATCATCGCGCCCCTCTTCAACCTCTCCAAGGTCCGCCAGAACAACAACTTCTCCCGGCCCTTCGACGGCA CCACCGCCAGCGCCTACAGCGTCGTCACCGCCCTCTACAACGTCATCTGGAGCTTCGTCGGCTACAGCAACGCAA ACTACGCCCTTAGCGAGACCAAGAACCCGACGCGCACCCTCAAGTATGCCGCCCCGCTCGGCATCGGCACCATCT CCGTCCTCTACATCCTCGCCAACGTCTCCTACTTCGCTGCCGTGCCCAGGGAGGAGATTCTCGAGTCCAAGCGCC TCGTCGCCGCCTCCCTCTTCCGCAACATGTTTGGCGAGCCGGCCGAGCGTGCCCTGTCCGTCTTCGTCGCCCTCT CCGCCCTGGGCAACGTCATGAGCGTCATCTTCTCCCAGGGCCGCCTGGTCCAGGAGCTGGGCCGCGAGGGCATTC TGCCCTTCTCCCGCCTCTGGGCCAGCAACCGACCCTTCAACGCCCCCTTGGCCGGCCTCTTCGAGCACTGGCTCG TGACCGCCATCACCGTCCTGGCACCGCCGGCCGGCGATGCGTACAACTTCGTCCTGAAGTGAGTCTCGTCCTCCT TCCCTACCCTTCTGATGGGCCCTCTCCGCTACCATGTCGGGCCAGCGGCCCGTTATCATCAGCTAACGTCTGCAC CTCTTTTTAGTCTCATCTCCTATCCTCTGGCCATCATCAACGTCTTCGTCGCTGGTGCTCTTATTCACCTGTACC GCAACCGGCAGAGCTGGAATTGGAACCCCCCACTGAAGGCCACCCTGCCCGTCACCATCTTCTTCCTTCTCAGCA ACATCTATCTCGTCATCGCCCCCTTCGTCCCTCCCGAGGAAGGCAACGGAATCTATGAGAATCTGCCGTACTGGA TCCACTGCGTGGTGGGCTTCGGCGTCATCTTTGCCGGCGGTCTCTACTGGCTGGTTTGGGCCGTCATCTTGCCCA AGATTGGGCGGTACGAGCTGGTGCGCGAGACGACCGTGGATGAGATCGACGGCTGGGAACGGAATGTCTTCTACA AGCGGCCGCTCGGAGATGCCCCTCGCGACGGCCCGCTGCCCTCGCCGGCTGACGACAGCGGAAAATAA |