Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2117
Gene name
LocationContig_1493:5903..6269
Strand-
Gene length (bp)366
Transcript length (bp)366
Coding sequence length (bp)366
Protein length (aa) 122

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular 0.3592 0.3196 0.9145 0.0625 0.1338 0.076 0.0857 0.0191 0.1786 0.0992

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8988
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2117 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2117
MARSSAGEVAWSRSQLAMTRSYWAPGRMERPWSASGWVASPACQRMRPSRPSRASVARPARSMASEMSTTSTSSA
PASTARRACEPLPPPRSRTRSPVQSPSALRMNWPSSRPSGTASYEA*
Coding >Hirsu2|2117
ATGGCGCGCAGCTCGGCCGGCGAGGTGGCGTGGTCGAGGAGCCAGTTGGCCATGACCAGGTCGTACTGGGCGCCC
GGCAGGATGGAGAGGCCCTGGTCGGCGAGCGGGTGGGTGGCGTCGCCGGCGTGCCAGCGGATGCGGCCCTCGCGG
CCGTCCCGGGCCTCGGTGGCCCGGCCGGCCCGGAGCATGGCCTCGGAGATGTCGACGACGTCGACAAGCTCGGCG
CCGGCCTCGACCGCCCGCCGCGCGTGCGAGCCGCTGCCGCCGCCCAGGTCGAGGACCCGCAGCCCGGTGCAGTCG
CCGAGCGCCCTGCGCATGAACTGGCCCTCGAGCCGGCCGAGCGGCACGGCCTCGTACGAGGCGTAG
Transcript >Hirsu2|2117
ATGGCGCGCAGCTCGGCCGGCGAGGTGGCGTGGTCGAGGAGCCAGTTGGCCATGACCAGGTCGTACTGGGCGCCC
GGCAGGATGGAGAGGCCCTGGTCGGCGAGCGGGTGGGTGGCGTCGCCGGCGTGCCAGCGGATGCGGCCCTCGCGG
CCGTCCCGGGCCTCGGTGGCCCGGCCGGCCCGGAGCATGGCCTCGGAGATGTCGACGACGTCGACAAGCTCGGCG
CCGGCCTCGACCGCCCGCCGCGCGTGCGAGCCGCTGCCGCCGCCCAGGTCGAGGACCCGCAGCCCGGTGCAGTCG
CCGAGCGCCCTGCGCATGAACTGGCCCTCGAGCCGGCCGAGCGGCACGGCCTCGTACGAGGCGTAG
Gene >Hirsu2|2117
ATGGCGCGCAGCTCGGCCGGCGAGGTGGCGTGGTCGAGGAGCCAGTTGGCCATGACCAGGTCGTACTGGGCGCCC
GGCAGGATGGAGAGGCCCTGGTCGGCGAGCGGGTGGGTGGCGTCGCCGGCGTGCCAGCGGATGCGGCCCTCGCGG
CCGTCCCGGGCCTCGGTGGCCCGGCCGGCCCGGAGCATGGCCTCGGAGATGTCGACGACGTCGACAAGCTCGGCG
CCGGCCTCGACCGCCCGCCGCGCGTGCGAGCCGCTGCCGCCGCCCAGGTCGAGGACCCGCAGCCCGGTGCAGTCG
CCGAGCGCCCTGCGCATGAACTGGCCCTCGAGCCGGCCGAGCGGCACGGCCTCGTACGAGGCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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