© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2113 |
| Gene name | |
| Location | Contig_1492:5991..6246 |
| Strand | - |
| Gene length (bp) | 255 |
| Transcript length (bp) | 255 |
| Coding sequence length (bp) | 255 |
| Protein length (aa) | 85 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.4822 | 0.4877 | 0.4849 | 0.0887 | 0.5387 | 0.1491 | 0.123 | 0.3214 | 0.3795 | 0.2882 |
| Orthofinder run ID | 4 |
| Orthogroup | 8987 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|2113 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2113 MPWLRLPAHSVRRWSVSTQLPHRGASGPLKRSPSKGCRSPHLVQTIFSRPPCSWTVGGQGPLGSRGTVVRRGSMD VSMQSMFCE* |
| Coding | >Hirsu2|2113 ATGCCGTGGCTGCGCTTGCCGGCCCACTCGGTGCGCAGGTGGTCCGTCTCGACGCAGCTGCCGCACAGGGGGGCC TCGGGCCCGCTGAAGAGGTCGCCGTCGAAGGGCTGCAGGTCGCCGCACTTGGTGCAGACCATCTTCTCGAGGCCG CCGTGCAGCTGGACCGTGGGCGGCCAGGGCCCCTTGGGCTCGAGGGGCACCGTGGTGCGGAGGGGCTCCATGGAC GTGTCGATGCAGTCGATGTTCTGCGAGTAG |
| Transcript | >Hirsu2|2113 ATGCCGTGGCTGCGCTTGCCGGCCCACTCGGTGCGCAGGTGGTCCGTCTCGACGCAGCTGCCGCACAGGGGGGCC TCGGGCCCGCTGAAGAGGTCGCCGTCGAAGGGCTGCAGGTCGCCGCACTTGGTGCAGACCATCTTCTCGAGGCCG CCGTGCAGCTGGACCGTGGGCGGCCAGGGCCCCTTGGGCTCGAGGGGCACCGTGGTGCGGAGGGGCTCCATGGAC GTGTCGATGCAGTCGATGTTCTGCGAGTAG |
| Gene | >Hirsu2|2113 ATGCCGTGGCTGCGCTTGCCGGCCCACTCGGTGCGCAGGTGGTCCGTCTCGACGCAGCTGCCGCACAGGGGGGCC TCGGGCCCGCTGAAGAGGTCGCCGTCGAAGGGCTGCAGGTCGCCGCACTTGGTGCAGACCATCTTCTCGAGGCCG CCGTGCAGCTGGACCGTGGGCGGCCAGGGCCCCTTGGGCTCGAGGGGCACCGTGGTGCGGAGGGGCTCCATGGAC GTGTCGATGCAGTCGATGTTCTGCGAGTAG |