© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2112 |
| Gene name | |
| Location | Contig_1492:1755..3546 |
| Strand | + |
| Gene length (bp) | 1791 |
| Transcript length (bp) | 1791 |
| Coding sequence length (bp) | 1791 |
| Protein length (aa) | 597 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 4.3E-23 | 411 | 553 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53259|PCP1_YEAST | Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 | 337 | 569 | 4.0E-15 |
| sp|Q58EK4|PARL_DANRE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 | 369 | 561 | 6.0E-15 |
| sp|Q3B8P0|PARL_RAT | Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 | 364 | 561 | 3.0E-12 |
| sp|Q5XJY4|PARL_MOUSE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 | 364 | 561 | 6.0E-12 |
| sp|Q5R5H4|PARL_PONAB | Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 | 364 | 561 | 1.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53259|PCP1_YEAST | Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 | 337 | 569 | 4.0E-15 |
| sp|Q58EK4|PARL_DANRE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 | 369 | 561 | 6.0E-15 |
| sp|Q3B8P0|PARL_RAT | Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 | 364 | 561 | 3.0E-12 |
| sp|Q5XJY4|PARL_MOUSE | Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 | 364 | 561 | 6.0E-12 |
| sp|Q5R5H4|PARL_PONAB | Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 | 364 | 561 | 1.0E-11 |
| sp|Q2KHV4|PARL_BOVIN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 | 364 | 561 | 1.0E-11 |
| sp|Q9H300|PARL_HUMAN | Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 | 364 | 561 | 1.0E-11 |
| sp|O14364|YOHB_SCHPO | Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1 | 357 | 553 | 3.0E-08 |
| sp|Q9FZ81|RBL12_ARATH | RHOMBOID-like protein 12, mitochondrial OS=Arabidopsis thaliana GN=RBL12 PE=2 SV=1 | 375 | 486 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008233 | peptidase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 335 | 357 | 22 |
| 2 | 451 | 470 | 19 |
| 3 | 474 | 496 | 22 |
| 4 | 503 | 525 | 22 |
| 5 | 540 | 557 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2112 MGSLWCPHASRALLRRTAARGFASSRGPRSQPPTALTTTTTTTLPRWLSSSACPPIGRRQDPRAWDAAAAALFFS GPLSRHGQRRTLFSSAKIICRYEDLPREYRDKDGLAWGSRRMEAAEVKRIFGPDLGVDDANRLLRILHGRRVAGT LEDPAFAIHTARFTAEQMAAGLTFLRDEVAVNEVVNAGLRAEDELDQMEQERQQRTARQTSDKGGKSVADRAKEE VEEESEGGQEAAEGYKPDPVYGRSALDEIRARNVAKRKAREKALEEMMEAAKAREGARATTARAVAARRADKAAL ATGGDEVRNAKVAAYYRKAQSDLSAPPPMTAWQRVLPSATLVALALAFMAAVCSVYEEPAARYRLLREVSASQAT VGALVAANGLVWLAWRAPPLWRLLNRYMILVVATPRPVTLLTAVFSHSRLPHLVVNMVPLWLVGTRLHDELGRAD FLALYLGCGALGFLGSLATYTARGWLTVTTLGASGATLGLCAAYFWEHRRDGFRLLGLPPDGVQGIVVLALLAAL QLAGLGSTARLQIDLASHVVGMTAGVLGMELITRCRRRRAVPAAEAVDGDDEDGDNRAGDGARGSGREGAG* |
| Coding | >Hirsu2|2112 ATGGGCAGCCTTTGGTGTCCGCACGCGTCGCGCGCCCTGCTGAGGCGGACCGCCGCCCGCGGCTTCGCGTCGTCC CGGGGCCCGCGATCCCAACCGCCCACTGCGTTGACGACGACGACAACGACGACCCTGCCGCGATGGCTCTCGAGC AGCGCTTGCCCCCCGATCGGCCGGCGGCAGGATCCGCGGGCGTGGGACGCCGCCGCCGCTGCCCTGTTCTTCTCT GGGCCCCTCTCCCGCCACGGCCAACGACGGACGCTCTTCTCTTCCGCCAAAATCATCTGCCGGTACGAGGACCTG CCGCGCGAATACCGTGACAAGGACGGCCTCGCGTGGGGAAGCCGGAGGATGGAGGCGGCCGAGGTCAAGAGAATC TTCGGACCGGACCTGGGCGTCGACGACGCGAACCGGCTCCTGCGGATCCTGCACGGGCGACGGGTCGCCGGCACG CTCGAGGACCCGGCCTTTGCCATCCACACGGCCCGCTTCACGGCCGAGCAGATGGCCGCCGGGCTGACGTTCCTG CGGGACGAGGTGGCCGTCAACGAGGTCGTCAACGCGGGGCTCCGGGCCGAGGACGAGCTGGACCAGATGGAGCAG GAGAGGCAGCAGCGGACGGCGCGCCAGACGAGCGACAAGGGCGGCAAGAGCGTTGCCGACCGTGCCAAGGAGGAG GTGGAAGAGGAGAGTGAGGGCGGGCAAGAGGCGGCCGAGGGCTACAAGCCGGACCCGGTCTACGGGCGGAGCGCG CTGGACGAGATACGGGCGCGCAACGTGGCGAAGCGCAAGGCCAGGGAGAAGGCGCTGGAGGAGATGATGGAGGCG GCCAAGGCGCGGGAAGGGGCCAGAGCCACGACGGCGAGGGCGGTGGCGGCCAGGCGGGCGGACAAGGCGGCGCTG GCGACGGGCGGCGACGAGGTGCGCAACGCCAAGGTGGCGGCGTACTATCGCAAGGCGCAGTCGGACCTGTCGGCG CCGCCGCCGATGACGGCATGGCAGCGGGTGCTGCCGTCGGCGACGCTGGTGGCGCTGGCGCTGGCCTTCATGGCG GCCGTGTGCAGCGTGTACGAGGAGCCGGCGGCGCGGTACCGGCTGCTGCGCGAGGTGTCGGCCTCGCAGGCGACG GTGGGCGCGCTCGTGGCGGCCAACGGGCTGGTGTGGTTGGCGTGGAGGGCGCCGCCGCTCTGGCGGCTGCTCAAC CGATACATGATCCTGGTGGTGGCGACGCCGCGGCCGGTGACGCTCCTCACGGCCGTCTTCTCGCACAGCCGGCTG CCGCACCTGGTCGTCAACATGGTGCCGCTGTGGCTGGTCGGCACGCGGCTGCACGACGAGCTGGGCCGGGCCGAC TTCCTCGCCCTCTACCTCGGCTGCGGCGCGCTCGGCTTCCTCGGCAGCCTGGCGACGTACACGGCGCGCGGCTGG CTGACGGTGACGACGCTCGGCGCCTCGGGCGCCACCCTCGGCCTCTGCGCCGCCTACTTCTGGGAGCACCGCCGC GACGGCTTCCGCCTGCTCGGCCTGCCGCCCGACGGCGTCCAGGGCATCGTCGTCCTCGCCCTGCTGGCCGCCCTC CAGCTGGCCGGCCTGGGCTCGACGGCCCGGCTGCAGATCGACCTGGCGTCGCACGTGGTCGGCATGACGGCCGGC GTCCTGGGCATGGAGCTCATCACGCGGTGCCGGCGGCGGCGGGCGGTGCCGGCGGCGGAGGCCGTTGACGGCGAC GACGAAGACGGCGATAATAGGGCCGGCGACGGCGCGAGGGGCTCGGGCCGGGAGGGGGCCGGATGA |
| Transcript | >Hirsu2|2112 ATGGGCAGCCTTTGGTGTCCGCACGCGTCGCGCGCCCTGCTGAGGCGGACCGCCGCCCGCGGCTTCGCGTCGTCC CGGGGCCCGCGATCCCAACCGCCCACTGCGTTGACGACGACGACAACGACGACCCTGCCGCGATGGCTCTCGAGC AGCGCTTGCCCCCCGATCGGCCGGCGGCAGGATCCGCGGGCGTGGGACGCCGCCGCCGCTGCCCTGTTCTTCTCT GGGCCCCTCTCCCGCCACGGCCAACGACGGACGCTCTTCTCTTCCGCCAAAATCATCTGCCGGTACGAGGACCTG CCGCGCGAATACCGTGACAAGGACGGCCTCGCGTGGGGAAGCCGGAGGATGGAGGCGGCCGAGGTCAAGAGAATC TTCGGACCGGACCTGGGCGTCGACGACGCGAACCGGCTCCTGCGGATCCTGCACGGGCGACGGGTCGCCGGCACG CTCGAGGACCCGGCCTTTGCCATCCACACGGCCCGCTTCACGGCCGAGCAGATGGCCGCCGGGCTGACGTTCCTG CGGGACGAGGTGGCCGTCAACGAGGTCGTCAACGCGGGGCTCCGGGCCGAGGACGAGCTGGACCAGATGGAGCAG GAGAGGCAGCAGCGGACGGCGCGCCAGACGAGCGACAAGGGCGGCAAGAGCGTTGCCGACCGTGCCAAGGAGGAG GTGGAAGAGGAGAGTGAGGGCGGGCAAGAGGCGGCCGAGGGCTACAAGCCGGACCCGGTCTACGGGCGGAGCGCG CTGGACGAGATACGGGCGCGCAACGTGGCGAAGCGCAAGGCCAGGGAGAAGGCGCTGGAGGAGATGATGGAGGCG GCCAAGGCGCGGGAAGGGGCCAGAGCCACGACGGCGAGGGCGGTGGCGGCCAGGCGGGCGGACAAGGCGGCGCTG GCGACGGGCGGCGACGAGGTGCGCAACGCCAAGGTGGCGGCGTACTATCGCAAGGCGCAGTCGGACCTGTCGGCG CCGCCGCCGATGACGGCATGGCAGCGGGTGCTGCCGTCGGCGACGCTGGTGGCGCTGGCGCTGGCCTTCATGGCG GCCGTGTGCAGCGTGTACGAGGAGCCGGCGGCGCGGTACCGGCTGCTGCGCGAGGTGTCGGCCTCGCAGGCGACG GTGGGCGCGCTCGTGGCGGCCAACGGGCTGGTGTGGTTGGCGTGGAGGGCGCCGCCGCTCTGGCGGCTGCTCAAC CGATACATGATCCTGGTGGTGGCGACGCCGCGGCCGGTGACGCTCCTCACGGCCGTCTTCTCGCACAGCCGGCTG CCGCACCTGGTCGTCAACATGGTGCCGCTGTGGCTGGTCGGCACGCGGCTGCACGACGAGCTGGGCCGGGCCGAC TTCCTCGCCCTCTACCTCGGCTGCGGCGCGCTCGGCTTCCTCGGCAGCCTGGCGACGTACACGGCGCGCGGCTGG CTGACGGTGACGACGCTCGGCGCCTCGGGCGCCACCCTCGGCCTCTGCGCCGCCTACTTCTGGGAGCACCGCCGC GACGGCTTCCGCCTGCTCGGCCTGCCGCCCGACGGCGTCCAGGGCATCGTCGTCCTCGCCCTGCTGGCCGCCCTC CAGCTGGCCGGCCTGGGCTCGACGGCCCGGCTGCAGATCGACCTGGCGTCGCACGTGGTCGGCATGACGGCCGGC GTCCTGGGCATGGAGCTCATCACGCGGTGCCGGCGGCGGCGGGCGGTGCCGGCGGCGGAGGCCGTTGACGGCGAC GACGAAGACGGCGATAATAGGGCCGGCGACGGCGCGAGGGGCTCGGGCCGGGAGGGGGCCGGATGA |
| Gene | >Hirsu2|2112 ATGGGCAGCCTTTGGTGTCCGCACGCGTCGCGCGCCCTGCTGAGGCGGACCGCCGCCCGCGGCTTCGCGTCGTCC CGGGGCCCGCGATCCCAACCGCCCACTGCGTTGACGACGACGACAACGACGACCCTGCCGCGATGGCTCTCGAGC AGCGCTTGCCCCCCGATCGGCCGGCGGCAGGATCCGCGGGCGTGGGACGCCGCCGCCGCTGCCCTGTTCTTCTCT GGGCCCCTCTCCCGCCACGGCCAACGACGGACGCTCTTCTCTTCCGCCAAAATCATCTGCCGGTACGAGGACCTG CCGCGCGAATACCGTGACAAGGACGGCCTCGCGTGGGGAAGCCGGAGGATGGAGGCGGCCGAGGTCAAGAGAATC TTCGGACCGGACCTGGGCGTCGACGACGCGAACCGGCTCCTGCGGATCCTGCACGGGCGACGGGTCGCCGGCACG CTCGAGGACCCGGCCTTTGCCATCCACACGGCCCGCTTCACGGCCGAGCAGATGGCCGCCGGGCTGACGTTCCTG CGGGACGAGGTGGCCGTCAACGAGGTCGTCAACGCGGGGCTCCGGGCCGAGGACGAGCTGGACCAGATGGAGCAG GAGAGGCAGCAGCGGACGGCGCGCCAGACGAGCGACAAGGGCGGCAAGAGCGTTGCCGACCGTGCCAAGGAGGAG GTGGAAGAGGAGAGTGAGGGCGGGCAAGAGGCGGCCGAGGGCTACAAGCCGGACCCGGTCTACGGGCGGAGCGCG CTGGACGAGATACGGGCGCGCAACGTGGCGAAGCGCAAGGCCAGGGAGAAGGCGCTGGAGGAGATGATGGAGGCG GCCAAGGCGCGGGAAGGGGCCAGAGCCACGACGGCGAGGGCGGTGGCGGCCAGGCGGGCGGACAAGGCGGCGCTG GCGACGGGCGGCGACGAGGTGCGCAACGCCAAGGTGGCGGCGTACTATCGCAAGGCGCAGTCGGACCTGTCGGCG CCGCCGCCGATGACGGCATGGCAGCGGGTGCTGCCGTCGGCGACGCTGGTGGCGCTGGCGCTGGCCTTCATGGCG GCCGTGTGCAGCGTGTACGAGGAGCCGGCGGCGCGGTACCGGCTGCTGCGCGAGGTGTCGGCCTCGCAGGCGACG GTGGGCGCGCTCGTGGCGGCCAACGGGCTGGTGTGGTTGGCGTGGAGGGCGCCGCCGCTCTGGCGGCTGCTCAAC CGATACATGATCCTGGTGGTGGCGACGCCGCGGCCGGTGACGCTCCTCACGGCCGTCTTCTCGCACAGCCGGCTG CCGCACCTGGTCGTCAACATGGTGCCGCTGTGGCTGGTCGGCACGCGGCTGCACGACGAGCTGGGCCGGGCCGAC TTCCTCGCCCTCTACCTCGGCTGCGGCGCGCTCGGCTTCCTCGGCAGCCTGGCGACGTACACGGCGCGCGGCTGG CTGACGGTGACGACGCTCGGCGCCTCGGGCGCCACCCTCGGCCTCTGCGCCGCCTACTTCTGGGAGCACCGCCGC GACGGCTTCCGCCTGCTCGGCCTGCCGCCCGACGGCGTCCAGGGCATCGTCGTCCTCGCCCTGCTGGCCGCCCTC CAGCTGGCCGGCCTGGGCTCGACGGCCCGGCTGCAGATCGACCTGGCGTCGCACGTGGTCGGCATGACGGCCGGC GTCCTGGGCATGGAGCTCATCACGCGGTGCCGGCGGCGGCGGGCGGTGCCGGCGGCGGAGGCCGTTGACGGCGAC GACGAAGACGGCGATAATAGGGCCGGCGACGGCGCGAGGGGCTCGGGCCGGGAGGGGGCCGGATGA |