Protein ID | Hirsu2|2107 |
Gene name | |
Location | Contig_1491:8..644 |
Strand | + |
Gene length (bp) | 636 |
Transcript length (bp) | 531 |
Coding sequence length (bp) | 531 |
Protein length (aa) | 177 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole|Golgi apparatus | Signal peptide|Transmembrane domain | 0.219 | 0.0929 | 0.3379 | 0.2248 | 0.1715 | 0.0053 | 0.2364 | 0.8259 | 0.6866 | 0.0155 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
2 | 92 | 114 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 402 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2107 LQAVLAAVLATLLLRGLVPSPVLDFLLDARWDALFEARDAARIALVQDTFACCGLDALDDRAYPFDAADTPCAAL YRRHRPCKGPWMSAMQATSALDFAVVLTVGLMQILGLLLMRDRTGWWTALRTQGWKQAELGDDGSSQHLLPDPDN DDDGYGAVPHLKPAPAAAPERHADNR* |
Coding | >Hirsu2|2107 CTGCAGGCCGTGCTGGCCGCCGTGCTGGCGACGCTGCTGCTGCGCGGCCTCGTGCCCTCGCCCGTCCTCGACTTC CTGCTCGACGCCCGCTGGGACGCCCTGTTCGAGGCCCGCGACGCCGCCCGCATCGCCCTCGTCCAGGACACCTTC GCCTGCTGCGGCCTCGACGCCCTCGACGACCGCGCCTACCCCTTCGACGCCGCCGACACGCCCTGCGCCGCCCTC TACCGCCGCCACCGCCCCTGCAAGGGCCCCTGGATGAGCGCCATGCAGGCCACCTCGGCCCTCGACTTTGCCGTC GTCCTTACCGTCGGCCTCATGCAGATCCTCGGCCTCCTCCTGATGAGGGACCGGACGGGCTGGTGGACCGCCCTG CGGACCCAGGGCTGGAAGCAGGCCGAGCTCGGCGACGACGGCAGCAGCCAGCACCTGCTGCCGGACCCCGACAAC GACGACGACGGCTACGGCGCCGTGCCACACCTCAAGCCCGCCCCGGCCGCAGCCCCGGAGCGACACGCCGACAAT CGTTGA |
Transcript | >Hirsu2|2107 CTGCAGGCCGTGCTGGCCGCCGTGCTGGCGACGCTGCTGCTGCGCGGCCTCGTGCCCTCGCCCGTCCTCGACTTC CTGCTCGACGCCCGCTGGGACGCCCTGTTCGAGGCCCGCGACGCCGCCCGCATCGCCCTCGTCCAGGACACCTTC GCCTGCTGCGGCCTCGACGCCCTCGACGACCGCGCCTACCCCTTCGACGCCGCCGACACGCCCTGCGCCGCCCTC TACCGCCGCCACCGCCCCTGCAAGGGCCCCTGGATGAGCGCCATGCAGGCCACCTCGGCCCTCGACTTTGCCGTC GTCCTTACCGTCGGCCTCATGCAGATCCTCGGCCTCCTCCTGATGAGGGACCGGACGGGCTGGTGGACCGCCCTG CGGACCCAGGGCTGGAAGCAGGCCGAGCTCGGCGACGACGGCAGCAGCCAGCACCTGCTGCCGGACCCCGACAAC GACGACGACGGCTACGGCGCCGTGCCACACCTCAAGCCCGCCCCGGCCGCAGCCCCGGAGCGACACGCCGACAAT CGTTGA |
Gene | >Hirsu2|2107 CTGCAGGCCGTGCTGGCCGCCGTGCTGGCGACGCTGCTGCTGCGCGGCCTCGTGCCCTCGCCCGTCCTCGACTTC CTGCTCGACGCCCGCTGGGACGCCCTGTTCGAGGCCCGCGACGCCGCCCGCATCGCCCTCGTCCAGGACACCTTC GCCTGCTGCGGCCTCGACGCCCTCGACGACCGCGCCTACCCCTTCGACGCCGCCGACACGCCCTGCGCCGCCCTC TACCGCCGCCACCGCCCCTGCAAGGGCCCCTGGATGAGCGCCATGCAGGCCACCTCGGCCCTCGACTTTGCCGTC GTCCTTACCGTCGGCCTCATGCAGGTCAGTTTTTTTTTTTTTTGTTTTTTTTTAAACCCATCCCGAGCCTCGCCG CCCTCTTCACCCTCCGGAGAACCGGCCATCAAGTCTGACCGCGAGCCGGCCCAGATCCTCGGCCTCCTCCTGATG AGGGACCGGACGGGCTGGTGGACCGCCCTGCGGACCCAGGGCTGGAAGCAGGCCGAGCTCGGCGACGACGGCAGC AGCCAGCACCTGCTGCCGGACCCCGACAACGACGACGACGGCTACGGCGCCGTGCCACACCTCAAGCCCGCCCCG GCCGCAGCCCCGGAGCGACACGCCGACAATCGTTGA |