© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2106 |
| Gene name | |
| Location | Contig_1490:3968..6190 |
| Strand | - |
| Gene length (bp) | 2222 |
| Transcript length (bp) | 2163 |
| Coding sequence length (bp) | 2163 |
| Protein length (aa) | 721 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07576 | BRAP2 | BRCA1-associated protein 2 | 9.7E-29 | 243 | 332 |
| PF02148 | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein | 3.7E-18 | 443 | 501 |
| PF13639 | zf-RING_2 | Ring finger domain | 8.5E-09 | 374 | 414 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 8.3E-07 | 375 | 402 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.7E-05 | 375 | 413 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 177 | 715 | 3.0E-101 |
| sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 206 | 713 | 1.0E-77 |
| sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 204 | 708 | 2.0E-72 |
| sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 204 | 709 | 3.0E-71 |
| sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 204 | 720 | 3.0E-67 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 177 | 715 | 3.0E-101 |
| sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 206 | 713 | 1.0E-77 |
| sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 204 | 708 | 2.0E-72 |
| sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 204 | 709 | 3.0E-71 |
| sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 204 | 720 | 3.0E-67 |
| sp|Q7ZUM8|UBP44_DANRE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1 | 443 | 512 | 6.0E-08 |
| sp|D2HBJ8|UBP44_AILME | Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1 | 443 | 512 | 1.0E-07 |
| sp|Q9H0E7|UBP44_HUMAN | Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2 | 443 | 500 | 1.0E-07 |
| sp|Q0V9G5|UBP44_XENTR | Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis GN=usp44 PE=2 SV=1 | 443 | 500 | 4.0E-07 |
| sp|Q5XGZ2|UP44B_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1 | 443 | 500 | 6.0E-07 |
| sp|Q8C2S0|UBP44_MOUSE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44 PE=2 SV=3 | 443 | 515 | 7.0E-07 |
| sp|Q6NTR6|UP44A_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis GN=usp44-a PE=2 SV=1 | 443 | 500 | 7.0E-07 |
| sp|Q54QE6|SIR2A_DICDI | NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1 | 443 | 502 | 9.0E-07 |
| sp|Q6P9L4|UBP49_MOUSE | Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1 | 437 | 531 | 9.0E-07 |
| sp|Q70CQ1|UBP49_HUMAN | Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49 PE=1 SV=1 | 437 | 500 | 2.0E-06 |
| sp|P38237|UBP14_YEAST | Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1 SV=2 | 432 | 497 | 2.0E-06 |
| sp|Q9EPZ8|RN103_RAT | E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103 PE=2 SV=1 | 331 | 441 | 4.0E-06 |
| sp|Q91W36|UBP3_MOUSE | Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1 | 434 | 477 | 8.0E-06 |
| sp|Q9R1W3|RN103_MOUSE | E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2 SV=2 | 325 | 441 | 8.0E-06 |
| sp|Q9Y6I4|UBP3_HUMAN | Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2 | 434 | 477 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.7642 | 0.5755 | 0.0679 | 0.0524 | 0.2145 | 0.0119 | 0.1076 | 0.0744 | 0.316 | 0.0051 |
| Orthofinder run ID | 4 |
| Orthogroup | 4971 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2106 MPSYYYHLKFELYSTANPTESAKPAVPGSGSSRIWLPATDASVFDDLPSHPPPDRPRSREDQAPSARGKTTGAAQ STDAARQEEARRDRNRSVIDCGAPRAPARDGEQKKIELLSERQWQDRARSSPAPTPAPGAAIRPRTAVQDWRFGR VSIETVDPAARANAMAEEASRAAGPLAAPALGPSFGGAGTATKADCLPLDMKHTELGWGVVHFYRDGEETPSLNA PDPHEDGPERGEASTADPCSTLCIPAVPAYMSPGDFMGFVGDRWMGDISHCRMVMTSRMNRYLVLLKFRDGSRAK QWKGEFDGRVFNSMESQVCHVVFVKSITFETPGRSRRNDHPAAAAAASSSSSSAVSNSLKPFPPPPPNLIELPTC PVCLERMDETNGLMTIPCSHVFHCACLQNWKGSGCPVCRFTNASSQMGAVDANNPYSQPFGSPVSNMCSVCDCTD DLWICLICGYVGCGRYKGGHAKDHWKETAHSFALELETQHVWDYAGDMWVHRLIRDKGDGKVVELPGRGNHGGQG DEDVVPRAKLENIGLEYTHLITSQLESQRAYYEEMISKAVDKAAKATAVAESSAAQSAETRERLAALEDRHRTLS ADTLPQLERELEREKKKAGRAETLARGLGQALQEEKRLNEGLMKRIEHLGADGAAVREELSALKEENAELKEMNR DLSMFISGQEKLKELEREGKVEEGEVAEGSMSVPEKKGRRRARKK* |
| Coding | >Hirsu2|2106 ATGCCTTCGTACTACTATCATCTGAAGTTCGAGCTCTACTCTACCGCAAACCCCACCGAGAGTGCGAAGCCGGCG GTCCCAGGCTCGGGCAGCAGTCGCATTTGGCTACCCGCGACCGACGCCAGCGTGTTCGACGACTTGCCCAGCCAC CCGCCACCGGACCGACCGAGGTCACGAGAAGACCAGGCGCCGAGTGCTCGCGGAAAAACGACGGGCGCCGCCCAG TCCACGGACGCGGCGAGGCAGGAGGAGGCCCGGCGAGACCGGAACCGAAGCGTCATCGACTGCGGCGCACCGCGA GCGCCCGCCCGAGACGGCGAGCAGAAGAAGATCGAGCTGCTCTCGGAGAGGCAGTGGCAGGACCGTGCCAGGAGC TCTCCAGCGCCGACGCCCGCGCCCGGCGCCGCCATACGACCGCGGACCGCCGTCCAGGACTGGCGGTTCGGCCGC GTGAGCATCGAGACGGTGGACCCGGCCGCCCGCGCCAACGCCATGGCAGAGGAGGCGAGCAGGGCGGCAGGTCCC CTGGCCGCGCCGGCTCTGGGGCCGTCCTTCGGCGGCGCCGGCACGGCGACCAAGGCCGACTGCCTGCCGCTCGAT ATGAAGCATACGGAGCTCGGCTGGGGCGTCGTCCACTTCTACCGAGACGGCGAGGAGACGCCGTCGCTCAACGCA CCGGACCCGCACGAGGACGGACCCGAGCGCGGCGAGGCCTCGACCGCGGACCCCTGCAGCACACTGTGCATACCG GCCGTGCCGGCCTACATGTCGCCGGGGGACTTTATGGGCTTCGTCGGCGATCGCTGGATGGGAGACATCAGCCAC TGTCGGATGGTCATGACCTCGAGGATGAACCGATACCTCGTCCTGCTCAAGTTCCGGGACGGCAGCCGAGCCAAG CAGTGGAAAGGCGAGTTCGACGGCAGGGTGTTCAACTCTATGGAGTCCCAAGTTTGCCACGTCGTCTTCGTCAAG TCCATTACCTTTGAGACGCCCGGCAGGTCGCGCCGAAACGACCACCCGGCGGCGGCGGCGGCTGCGTCGTCGTCT TCGTCGTCGGCCGTTTCCAACAGCCTCAAGCCGTTCCCGCCTCCGCCGCCCAACCTCATCGAACTCCCGACCTGC CCCGTGTGCCTGGAGAGGATGGACGAGACCAATGGGCTGATGACGATACCCTGTTCCCACGTTTTTCACTGCGCC TGCCTTCAGAACTGGAAAGGTTCGGGATGCCCGGTCTGCCGATTCACAAACGCCTCGTCGCAGATGGGCGCCGTC GACGCCAACAACCCGTACTCGCAGCCGTTCGGGTCGCCCGTGTCCAACATGTGCAGCGTGTGCGACTGCACGGAC GACCTCTGGATCTGCCTCATCTGCGGCTACGTCGGCTGCGGCCGCTACAAGGGCGGCCACGCCAAGGACCACTGG AAGGAGACGGCGCACAGCTTCGCCCTGGAGCTCGAGACGCAGCACGTCTGGGACTACGCCGGGGACATGTGGGTG CACCGCCTGATCCGCGACAAGGGCGACGGCAAGGTCGTCGAGCTGCCCGGCCGGGGCAACCACGGCGGGCAGGGC GACGAGGACGTGGTGCCGCGGGCCAAGCTGGAGAACATCGGGCTCGAGTACACGCACCTGATTACGAGCCAGCTC GAGTCGCAGCGGGCCTACTACGAGGAGATGATCAGCAAGGCGGTCGACAAGGCGGCCAAGGCGACGGCCGTGGCG GAGAGCAGCGCCGCGCAGTCGGCCGAGACGAGGGAGCGGCTCGCGGCGCTCGAGGACAGGCACAGGACGCTCAGC GCCGACACGCTCCCGCAGCTCGAGCGCGAGCTGGAGCGGGAGAAGAAGAAGGCGGGCCGGGCGGAGACGCTGGCG CGCGGCCTGGGCCAGGCGCTGCAGGAGGAGAAGCGGCTGAACGAGGGCCTCATGAAGCGCATCGAGCACCTGGGC GCGGACGGCGCGGCGGTGCGGGAGGAGCTCTCGGCGCTCAAGGAGGAGAACGCGGAGCTCAAGGAGATGAACCGC GACCTGTCCATGTTCATCTCCGGGCAGGAGAAGCTCAAGGAGCTGGAGCGGGAGGGCAAGGTGGAGGAGGGGGAG GTTGCCGAGGGGAGCATGAGCGTGCCGGAGAAGAAGGGCCGGAGAAGGGCGCGCAAGAAGTGA |
| Transcript | >Hirsu2|2106 ATGCCTTCGTACTACTATCATCTGAAGTTCGAGCTCTACTCTACCGCAAACCCCACCGAGAGTGCGAAGCCGGCG GTCCCAGGCTCGGGCAGCAGTCGCATTTGGCTACCCGCGACCGACGCCAGCGTGTTCGACGACTTGCCCAGCCAC CCGCCACCGGACCGACCGAGGTCACGAGAAGACCAGGCGCCGAGTGCTCGCGGAAAAACGACGGGCGCCGCCCAG TCCACGGACGCGGCGAGGCAGGAGGAGGCCCGGCGAGACCGGAACCGAAGCGTCATCGACTGCGGCGCACCGCGA GCGCCCGCCCGAGACGGCGAGCAGAAGAAGATCGAGCTGCTCTCGGAGAGGCAGTGGCAGGACCGTGCCAGGAGC TCTCCAGCGCCGACGCCCGCGCCCGGCGCCGCCATACGACCGCGGACCGCCGTCCAGGACTGGCGGTTCGGCCGC GTGAGCATCGAGACGGTGGACCCGGCCGCCCGCGCCAACGCCATGGCAGAGGAGGCGAGCAGGGCGGCAGGTCCC CTGGCCGCGCCGGCTCTGGGGCCGTCCTTCGGCGGCGCCGGCACGGCGACCAAGGCCGACTGCCTGCCGCTCGAT ATGAAGCATACGGAGCTCGGCTGGGGCGTCGTCCACTTCTACCGAGACGGCGAGGAGACGCCGTCGCTCAACGCA CCGGACCCGCACGAGGACGGACCCGAGCGCGGCGAGGCCTCGACCGCGGACCCCTGCAGCACACTGTGCATACCG GCCGTGCCGGCCTACATGTCGCCGGGGGACTTTATGGGCTTCGTCGGCGATCGCTGGATGGGAGACATCAGCCAC TGTCGGATGGTCATGACCTCGAGGATGAACCGATACCTCGTCCTGCTCAAGTTCCGGGACGGCAGCCGAGCCAAG CAGTGGAAAGGCGAGTTCGACGGCAGGGTGTTCAACTCTATGGAGTCCCAAGTTTGCCACGTCGTCTTCGTCAAG TCCATTACCTTTGAGACGCCCGGCAGGTCGCGCCGAAACGACCACCCGGCGGCGGCGGCGGCTGCGTCGTCGTCT TCGTCGTCGGCCGTTTCCAACAGCCTCAAGCCGTTCCCGCCTCCGCCGCCCAACCTCATCGAACTCCCGACCTGC CCCGTGTGCCTGGAGAGGATGGACGAGACCAATGGGCTGATGACGATACCCTGTTCCCACGTTTTTCACTGCGCC TGCCTTCAGAACTGGAAAGGTTCGGGATGCCCGGTCTGCCGATTCACAAACGCCTCGTCGCAGATGGGCGCCGTC GACGCCAACAACCCGTACTCGCAGCCGTTCGGGTCGCCCGTGTCCAACATGTGCAGCGTGTGCGACTGCACGGAC GACCTCTGGATCTGCCTCATCTGCGGCTACGTCGGCTGCGGCCGCTACAAGGGCGGCCACGCCAAGGACCACTGG AAGGAGACGGCGCACAGCTTCGCCCTGGAGCTCGAGACGCAGCACGTCTGGGACTACGCCGGGGACATGTGGGTG CACCGCCTGATCCGCGACAAGGGCGACGGCAAGGTCGTCGAGCTGCCCGGCCGGGGCAACCACGGCGGGCAGGGC GACGAGGACGTGGTGCCGCGGGCCAAGCTGGAGAACATCGGGCTCGAGTACACGCACCTGATTACGAGCCAGCTC GAGTCGCAGCGGGCCTACTACGAGGAGATGATCAGCAAGGCGGTCGACAAGGCGGCCAAGGCGACGGCCGTGGCG GAGAGCAGCGCCGCGCAGTCGGCCGAGACGAGGGAGCGGCTCGCGGCGCTCGAGGACAGGCACAGGACGCTCAGC GCCGACACGCTCCCGCAGCTCGAGCGCGAGCTGGAGCGGGAGAAGAAGAAGGCGGGCCGGGCGGAGACGCTGGCG CGCGGCCTGGGCCAGGCGCTGCAGGAGGAGAAGCGGCTGAACGAGGGCCTCATGAAGCGCATCGAGCACCTGGGC GCGGACGGCGCGGCGGTGCGGGAGGAGCTCTCGGCGCTCAAGGAGGAGAACGCGGAGCTCAAGGAGATGAACCGC GACCTGTCCATGTTCATCTCCGGGCAGGAGAAGCTCAAGGAGCTGGAGCGGGAGGGCAAGGTGGAGGAGGGGGAG GTTGCCGAGGGGAGCATGAGCGTGCCGGAGAAGAAGGGCCGGAGAAGGGCGCGCAAGAAGTGA |
| Gene | >Hirsu2|2106 ATGCCTTCGTACTACTATCATCTGAAGTTCGAGCTCTACTCTACCGCAAACCCCACCGAGAGTGCGAAGCCGGCG GTCCCAGGCTCGGGCAGCAGTCGCATTTGGCTACCCGCGACCGACGCCAGCGTGTTCGACGACTTGCCCAGCCAC CCGCCACCGGACCGACCGAGGTCACGAGAAGACCAGGCGCCGAGTGCTCGCGGAAAAACGACGGGCGCCGCCCAG TCCACGGACGCGGCGAGGCAGGAGGAGGCCCGGCGAGACCGGAACCGAAGCGTCATCGACTGCGGCGCACCGCGA GCGCCCGCCCGAGACGGCGAGCAGAAGAAGATCGAGCTGCTCTCGGAGAGGCAGTGGCAGGACCGTGCCAGGAGC TCTCCAGCGCCGACGCCCGCGCCCGGCGCCGCCATACGACCGCGGACCGCCGTCCAGGACTGGCGGTTCGGCCGC GTGAGCATCGAGACGGTGGACCCGGCCGCCCGCGCCAACGCCATGGCAGAGGAGGCGAGCAGGGCGGCAGGTCCC CTGGCCGCGCCGGCTCTGGGGCCGTCCTTCGGCGGCGCCGGCACGGCGACCAAGGCCGACTGCCTGCCGCTCGAT ATGAAGCATACGGAGCTCGGCTGGGGCGTCGTCCACTTCTACCGAGACGGCGAGGAGACGCCGTCGCTCAACGCA CCGGACCCGCACGAGGACGGACCCGAGCGCGGCGAGGCCTCGACCGCGGACCCCTGCAGCACACTGTGCATACCG GCCGTGCCGGCCTACATGTCGCCGGGGGACTTTATGGGCTTCGTCGGCGATCGCTGGATGGGAGACATCAGCCAC TGTCGGATGGTCATGACCTCGAGGATGAACCGATACCTCGTCCTGCTCAAGTTCCGGGACGGCAGCCGAGCCAAG CAGTGGAAAGGCGAGTTCGACGGCAGGGTGTTCAACTCTATGGAGGCAAGTCTCATCCAAACGCGCTGCCTCGTT GTTCCAGGGGCTGACCGACCTCTTTCCAGTCCCAAGTTTGCCACGTCGTCTTCGTCAAGTCCATTACCTTTGAGA CGCCCGGCAGGTCGCGCCGAAACGACCACCCGGCGGCGGCGGCGGCTGCGTCGTCGTCTTCGTCGTCGGCCGTTT CCAACAGCCTCAAGCCGTTCCCGCCTCCGCCGCCCAACCTCATCGAACTCCCGACCTGCCCCGTGTGCCTGGAGA GGATGGACGAGACCAATGGGCTGATGACGATACCCTGTTCCCACGTTTTTCACTGCGCCTGCCTTCAGAACTGGA AAGGTTCGGGATGCCCGGTCTGCCGATTCACAAACGCCTCGTCGCAGATGGGCGCCGTCGACGCCAACAACCCGT ACTCGCAGCCGTTCGGGTCGCCCGTGTCCAACATGTGCAGCGTGTGCGACTGCACGGACGACCTCTGGATCTGCC TCATCTGCGGCTACGTCGGCTGCGGCCGCTACAAGGGCGGCCACGCCAAGGACCACTGGAAGGAGACGGCGCACA GCTTCGCCCTGGAGCTCGAGACGCAGCACGTCTGGGACTACGCCGGGGACATGTGGGTGCACCGCCTGATCCGCG ACAAGGGCGACGGCAAGGTCGTCGAGCTGCCCGGCCGGGGCAACCACGGCGGGCAGGGCGACGAGGACGTGGTGC CGCGGGCCAAGCTGGAGAACATCGGGCTCGAGTACACGCACCTGATTACGAGCCAGCTCGAGTCGCAGCGGGCCT ACTACGAGGAGATGATCAGCAAGGCGGTCGACAAGGCGGCCAAGGCGACGGCCGTGGCGGAGAGCAGCGCCGCGC AGTCGGCCGAGACGAGGGAGCGGCTCGCGGCGCTCGAGGACAGGCACAGGACGCTCAGCGCCGACACGCTCCCGC AGCTCGAGCGCGAGCTGGAGCGGGAGAAGAAGAAGGCGGGCCGGGCGGAGACGCTGGCGCGCGGCCTGGGCCAGG CGCTGCAGGAGGAGAAGCGGCTGAACGAGGGCCTCATGAAGCGCATCGAGCACCTGGGCGCGGACGGCGCGGCGG TGCGGGAGGAGCTCTCGGCGCTCAAGGAGGAGAACGCGGAGCTCAAGGAGATGAACCGCGACCTGTCCATGTTCA TCTCCGGGCAGGAGAAGCTCAAGGAGCTGGAGCGGGAGGGCAAGGTGGAGGAGGGGGAGGTTGCCGAGGGGAGCA TGAGCGTGCCGGAGAAGAAGGGCCGGAGAAGGGCGCGCAAGAAGTGA |