Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2103
Gene name
LocationContig_149:29578..31184
Strand+
Gene length (bp)1606
Transcript length (bp)1461
Coding sequence length (bp)1461
Protein length (aa) 487

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03104 DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain 3.6E-07 49 218

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 2 371 2.0E-47
sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 3 287 2.0E-41
sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 3 287 6.0E-41
sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 40 284 3.0E-40
sp|Q766Z3|REV3_ARATH DNA polymerase zeta catalytic subunit OS=Arabidopsis thaliana GN=REV3 PE=2 SV=1 2 307 2.0E-34
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 2 371 2.0E-47
sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 3 287 2.0E-41
sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 3 287 6.0E-41
sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 40 284 3.0E-40
sp|Q766Z3|REV3_ARATH DNA polymerase zeta catalytic subunit OS=Arabidopsis thaliana GN=REV3 PE=2 SV=1 2 307 2.0E-34
sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1 SV=1 11 185 1.0E-17
sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2 11 185 9.0E-17
sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2 11 185 4.0E-16
sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1 40 243 9.0E-16
sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1 PE=2 SV=1 40 185 1.0E-15
sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana GN=POLD1 PE=2 SV=2 39 192 4.0E-14
sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster GN=DNApol-delta PE=2 SV=2 37 243 8.0E-14
sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1 35 185 1.0E-13
sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1 35 184 5.0E-13
sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2 40 192 3.0E-12
sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum GN=pold1 PE=3 SV=1 37 243 3.0E-11
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.4024 0.8797 0.037 0.0869 0.1217 0.0176 0.0689 0.0882 0.0874 0.0296

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8985
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2103 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2103
MDLFRVRLNCIDHYQASPTRYDPQLRNDVRPSQVSKGPKVPVVRVFGSTETGQKVCAHIHGAFPYLYVEYPGSLA
PEEVGAFTYRLHLSIDHALAVSYRREQNGDNAKFVARITLVKGVPFYGFHVGYRFFLKIYMFNPIVMTRLADLLQ
QGVIMKQKFQPFEAHLQYLLQFMVDYNLYGCDYLESSKATFRAPVPQHDQGFTSSHLWHSLSIPSEKITDDPLLP
RASHCSIEVDICVQNIVNRKMVKERQLHHDFVERVNPVPGDLKLVHSMAGLWKDEIKRRKRQMPPALQGNSPFPR
EVLVTMSANPRDSQPQGWIHEDEYQEEIRGLVDQEKLDLADEAVDFNTFTKSAEHEQAVNTALQSVEDLYPSKLM
IALGLPPKLSQASHSPANSIDVDENKARQVQLDEDDFFPGGSDQEALEELANADALNAKRRADKARSVNLTRPID
CTQYQFQGRFWKLRKMKVSSAEQSKKTRSSLRKGDS*
Coding >Hirsu2|2103
ATGGACTTGTTCCGAGTCAGACTGAACTGCATCGACCACTATCAGGCATCGCCGACGCGTTATGACCCTCAGTTG
CGCAATGACGTACGCCCTTCTCAAGTCTCCAAGGGTCCGAAGGTTCCCGTCGTGAGAGTCTTCGGGTCCACGGAA
ACAGGGCAAAAAGTCTGCGCTCACATTCATGGGGCTTTCCCCTATCTATATGTGGAATATCCGGGCAGCCTGGCC
CCGGAGGAAGTCGGCGCTTTTACTTACCGCCTTCACCTTTCCATCGATCACGCTCTCGCCGTGAGCTATCGTCGA
GAGCAAAATGGAGATAATGCCAAGTTTGTGGCCCGGATCACTTTGGTGAAGGGTGTCCCCTTTTACGGATTCCAC
GTGGGGTACCGGTTCTTTCTCAAGATTTACATGTTCAACCCCATTGTCATGACACGACTGGCCGACCTCCTCCAG
CAGGGAGTCATCATGAAGCAAAAGTTCCAACCTTTTGAGGCGCACCTGCAGTACCTCTTGCAGTTCATGGTTGAT
TACAATTTGTATGGCTGTGATTATCTCGAGTCATCGAAGGCCACCTTCCGAGCTCCCGTACCCCAGCACGACCAG
GGCTTCACATCGTCTCATCTATGGCACAGTCTGTCTATTCCGTCCGAAAAAATCACCGATGACCCCCTGTTGCCT
CGTGCGAGCCACTGCTCGATTGAGGTAGACATTTGCGTGCAAAACATAGTCAACCGAAAGATGGTGAAGGAGCGT
CAACTGCATCACGACTTCGTTGAGCGCGTCAATCCTGTACCTGGGGATTTGAAGCTGGTGCACAGTATGGCAGGG
CTTTGGAAGGACGAGATCAAGAGGCGCAAGCGACAAATGCCCCCTGCGCTACAGGGAAACAGTCCCTTCCCCCGA
GAAGTCCTCGTCACCATGTCTGCGAACCCTCGGGACTCTCAGCCACAAGGATGGATTCACGAAGACGAGTACCAG
GAAGAGATCCGAGGGTTGGTCGACCAGGAGAAGCTGGATCTTGCCGATGAAGCAGTCGATTTCAATACGTTTACC
AAAAGCGCCGAGCATGAGCAAGCGGTGAACACCGCCCTCCAGTCTGTGGAGGACTTGTATCCATCCAAGCTGATG
ATAGCACTCGGTCTGCCTCCAAAGCTGAGTCAGGCGTCTCATAGTCCGGCCAACAGCATCGACGTCGACGAGAAC
AAGGCTCGCCAGGTTCAGCTGGACGAAGACGATTTCTTCCCGGGCGGTTCGGATCAAGAAGCCCTGGAGGAGCTA
GCCAACGCTGATGCCCTGAACGCGAAGCGCCGAGCAGATAAGGCCCGTTCAGTCAACCTCACAAGACCGATCGAC
TGCACACAATACCAATTTCAGGGGCGCTTCTGGAAGCTGCGGAAGATGAAGGTCTCGTCGGCAGAGCAAAGCAAG
AAGACACGCTCAAGCCTTCGAAAAGGAGACAGCTAA
Transcript >Hirsu2|2103
ATGGACTTGTTCCGAGTCAGACTGAACTGCATCGACCACTATCAGGCATCGCCGACGCGTTATGACCCTCAGTTG
CGCAATGACGTACGCCCTTCTCAAGTCTCCAAGGGTCCGAAGGTTCCCGTCGTGAGAGTCTTCGGGTCCACGGAA
ACAGGGCAAAAAGTCTGCGCTCACATTCATGGGGCTTTCCCCTATCTATATGTGGAATATCCGGGCAGCCTGGCC
CCGGAGGAAGTCGGCGCTTTTACTTACCGCCTTCACCTTTCCATCGATCACGCTCTCGCCGTGAGCTATCGTCGA
GAGCAAAATGGAGATAATGCCAAGTTTGTGGCCCGGATCACTTTGGTGAAGGGTGTCCCCTTTTACGGATTCCAC
GTGGGGTACCGGTTCTTTCTCAAGATTTACATGTTCAACCCCATTGTCATGACACGACTGGCCGACCTCCTCCAG
CAGGGAGTCATCATGAAGCAAAAGTTCCAACCTTTTGAGGCGCACCTGCAGTACCTCTTGCAGTTCATGGTTGAT
TACAATTTGTATGGCTGTGATTATCTCGAGTCATCGAAGGCCACCTTCCGAGCTCCCGTACCCCAGCACGACCAG
GGCTTCACATCGTCTCATCTATGGCACAGTCTGTCTATTCCGTCCGAAAAAATCACCGATGACCCCCTGTTGCCT
CGTGCGAGCCACTGCTCGATTGAGGTAGACATTTGCGTGCAAAACATAGTCAACCGAAAGATGGTGAAGGAGCGT
CAACTGCATCACGACTTCGTTGAGCGCGTCAATCCTGTACCTGGGGATTTGAAGCTGGTGCACAGTATGGCAGGG
CTTTGGAAGGACGAGATCAAGAGGCGCAAGCGACAAATGCCCCCTGCGCTACAGGGAAACAGTCCCTTCCCCCGA
GAAGTCCTCGTCACCATGTCTGCGAACCCTCGGGACTCTCAGCCACAAGGATGGATTCACGAAGACGAGTACCAG
GAAGAGATCCGAGGGTTGGTCGACCAGGAGAAGCTGGATCTTGCCGATGAAGCAGTCGATTTCAATACGTTTACC
AAAAGCGCCGAGCATGAGCAAGCGGTGAACACCGCCCTCCAGTCTGTGGAGGACTTGTATCCATCCAAGCTGATG
ATAGCACTCGGTCTGCCTCCAAAGCTGAGTCAGGCGTCTCATAGTCCGGCCAACAGCATCGACGTCGACGAGAAC
AAGGCTCGCCAGGTTCAGCTGGACGAAGACGATTTCTTCCCGGGCGGTTCGGATCAAGAAGCCCTGGAGGAGCTA
GCCAACGCTGATGCCCTGAACGCGAAGCGCCGAGCAGATAAGGCCCGTTCAGTCAACCTCACAAGACCGATCGAC
TGCACACAATACCAATTTCAGGGGCGCTTCTGGAAGCTGCGGAAGATGAAGGTCTCGTCGGCAGAGCAAAGCAAG
AAGACACGCTCAAGCCTTCGAAAAGGAGACAGCTAA
Gene >Hirsu2|2103
ATGGACTTGTTCCGAGTCAGACTGAACTGCATCGACCACTATCAGGCATCGCCGACGCGTTATGACCCTCAGTTG
CGCAATGACGTACGCCCTTCTCAAGTCTCCAAGGGTCCGAAGGTTCCCGTCGTGAGAGTCTTCGGGTCCACGGAA
ACAGGGCAAAAAGTCTGCGCTCACATTCATGGGGCTTTCCCCTATCTATATGTGGAATATCCGGGCAGCCTGGCC
CCGGAGGAAGGTTCGTGATCGTTGCCCCCCAAGTGTCGCTCTCAACCGCATGTAACCTGACTTGGCTTTGCAGTC
GGCGCTTTTACTTACCGCCTTCACCTTTCCATCGATCACGCTCTCGCCGTGAGCTATCGTCGAGAGCAAAATGGA
GATAATGCCAAGTTTGTGGCCCGGATCACTTTGGTGAAGGGTGTCCCCTTTTACGGATTCCACGTGGGGTACCGG
TTCTTTCTCAAGATTTACATGTTCAACCCCATTGTCATGACACGACTGGCCGACCTCCTCCAGCAGGGAGTCATC
ATGAAGCAAAAGTTCCAACCTTTTGAGGCGCACCTGCAGTACCTCTTGCAGTTCATGGTTGATTACAATTTGTAT
GGCTGTGATTATCTCGAGTCATCGAAGGCCACCTTCCGAGCTCCCGTACCCCAGCACGACCAGGGCTTCACATCG
TCTCATCTATGGCACAGTCTGTCTATTCCGTCCGAAAAAATCACCGATGACCCCCTGTTGCCTCGTGCGAGCCAC
TGCTCGATTGAGGTAGACATTTGCGTGCAAAACATAGTCAACCGAAAGATGGTGAAGGAGCGTCAACTGCATCAC
GACTTCGTTGAGCGCGTCAATCCTGTACCTGGGGATTTGAAGCTGGTGCACAGTATGGCAGGGCTTTGGAAGGAC
GAGATCAAGAGGCGCAAGCGACAAATGCCCCCTGCGCTACAGGGAAACAGTCCCTTCCCCCGAGAAGTCCTCGTC
ACCATGTCTGCGAACCCTCGGGACTCTCAGCCACAAGGATGGATTCACGAAGACGAGTACCAGGAAGAGATCCGA
GGGTTGGTCGACCAGGAGAAGCTGGATCTTGCCGATGAAGCAGTCGATTTCAATACGTTTACCAAAAGCGCCGAG
CATGAGCAAGCGGTGAACACCGCCCTCCAGTCTGTGGAGGACTTGTATCCATCCAAGCTGATGATAGCACTCGGT
CTGCCTCCAAAGCTGAGTCAGGCGTCTCATAGTCCGGCCAACAGCATCGACGTCGACGAGAACAAGGCTCGCCAG
GTTCAGCTGGACGAAGACGATTTCTTCCCGGGCGGTTCGGATCAAGAAGCCCTGGAGGAGCTAGCCAACGCTGAT
GCCCTGAACGCGAAGCGCCGAGCAGATAAGGCCCGTTCAGTCAACCTCACAAGGTCTGGTGAAGGAGCCTCACAC
GACACCGGCGTGCCACGGCCATACCCTCAAATCTCAGGTGTCTATCTCAGCATGATGAAGACCGATCGACTGCAC
ACAATACCAATTTCAGGGGCGCTTCTGGAAGCTGCGGAAGATGAAGGTCTCGTCGGCAGAGCAAAGCAAGAAGAC
ACGCTCAAGCCTTCGAAAAGGAGACAGCTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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