© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2101 |
| Gene name | |
| Location | Contig_149:26526..27460 |
| Strand | + |
| Gene length (bp) | 934 |
| Transcript length (bp) | 624 |
| Coding sequence length (bp) | 624 |
| Protein length (aa) | 208 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01479 | S4 | S4 domain | 3.0E-12 | 121 | 164 |
| PF00163 | Ribosomal_S4 | Ribosomal protein S4/S9 N-terminal domain | 1.6E-10 | 23 | 120 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52810|RS9_PODAS | 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1 | 17 | 207 | 1.0E-112 |
| sp|O59675|RS9B_SCHPO | 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps902 PE=1 SV=3 | 17 | 195 | 5.0E-103 |
| sp|Q09757|RS9A_SCHPO | 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps901 PE=1 SV=2 | 17 | 193 | 1.0E-102 |
| sp|P55935|RS9_DROME | 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2 | 19 | 195 | 4.0E-98 |
| sp|P29314|RS9_RAT | 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4 | 24 | 207 | 7.0E-96 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52810|RS9_PODAS | 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1 | 17 | 207 | 1.0E-112 |
| sp|O59675|RS9B_SCHPO | 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps902 PE=1 SV=3 | 17 | 195 | 5.0E-103 |
| sp|Q09757|RS9A_SCHPO | 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps901 PE=1 SV=2 | 17 | 193 | 1.0E-102 |
| sp|P55935|RS9_DROME | 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2 | 19 | 195 | 4.0E-98 |
| sp|P29314|RS9_RAT | 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4 | 24 | 207 | 7.0E-96 |
| sp|A9L913|RS9_PAPAN | 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1 | 24 | 207 | 7.0E-96 |
| sp|Q6ZWN5|RS9_MOUSE | 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=1 SV=3 | 24 | 207 | 7.0E-96 |
| sp|P46781|RS9_HUMAN | 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3 | 24 | 207 | 7.0E-96 |
| sp|A6QLG5|RS9_BOVIN | 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1 | 24 | 207 | 7.0E-96 |
| sp|O13516|RS9A_YEAST | 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS9A PE=1 SV=3 | 17 | 198 | 4.0E-94 |
| sp|P05755|RS9B_YEAST | 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS9B PE=1 SV=4 | 17 | 191 | 4.0E-94 |
| sp|Q20228|RS9_CAEEL | 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3 SV=1 | 23 | 204 | 2.0E-93 |
| sp|Q9LXG1|RS91_ARATH | 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1 | 20 | 198 | 1.0E-91 |
| sp|Q9FLF0|RS92_ARATH | 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1 | 20 | 194 | 4.0E-88 |
| sp|P14132|RS9_DICDI | 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1 SV=1 | 22 | 203 | 7.0E-85 |
| sp|P17959|RS9_TRYBB | Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1 | 20 | 205 | 4.0E-75 |
| sp|Q25555|RS9_NAEFO | 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1 | 20 | 196 | 4.0E-72 |
| sp|Q29197|RS9_PIG | 40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1 | 24 | 145 | 1.0E-64 |
| sp|O15612|RS9_ENTHI | 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2 | 20 | 199 | 1.0E-54 |
| sp|A8A8W3|RS4_IGNH4 | 30S ribosomal protein S4 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4 PE=3 SV=1 | 19 | 178 | 2.0E-35 |
| sp|A0B9L2|RS4_METTP | 30S ribosomal protein S4 OS=Methanosaeta thermophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) GN=rps4 PE=3 SV=1 | 19 | 185 | 4.0E-35 |
| sp|Q8TVC0|RS4_METKA | 30S ribosomal protein S4 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rps4 PE=3 SV=1 | 19 | 199 | 3.0E-34 |
| sp|A7IAH7|RS4_METB6 | 30S ribosomal protein S4 OS=Methanoregula boonei (strain 6A8) GN=rps4 PE=3 SV=1 | 19 | 178 | 4.0E-33 |
| sp|A3DMQ4|RS4_STAMF | 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1) GN=rps4 PE=3 SV=1 | 19 | 178 | 8.0E-33 |
| sp|O28000|RS4_ARCFU | 30S ribosomal protein S4 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rps4 PE=3 SV=1 | 19 | 179 | 6.0E-32 |
| sp|Q8SRW6|RS9_ENCCU | 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPS9 PE=1 SV=1 | 17 | 196 | 3.0E-31 |
| sp|A1RWT8|RS4_THEPD | 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5) GN=rps4 PE=3 SV=1 | 19 | 200 | 5.0E-31 |
| sp|Q2FT97|RS4_METHJ | 30S ribosomal protein S4 OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rps4 PE=3 SV=1 | 19 | 180 | 5.0E-31 |
| sp|Q6KZP7|RS4_PICTO | 30S ribosomal protein S4 OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps4 PE=3 SV=1 | 24 | 196 | 6.0E-31 |
| sp|Q46GC8|RS4_METBF | 30S ribosomal protein S4 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4 PE=3 SV=1 | 19 | 180 | 6.0E-31 |
| sp|Q96YV8|RS4_SULTO | 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1 | 29 | 183 | 3.0E-30 |
| sp|A2BK77|RS4_HYPBU | 30S ribosomal protein S4 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5) GN=rps4 PE=3 SV=1 | 29 | 182 | 6.0E-30 |
| sp|P54020|RS4_METJA | 30S ribosomal protein S4 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rps4 PE=3 SV=1 | 18 | 180 | 7.0E-30 |
| sp|P39467|RS4_SULAC | 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rps4 PE=3 SV=3 | 19 | 185 | 1.0E-29 |
| sp|A2SSV9|RS4_METLZ | 30S ribosomal protein S4 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4 PE=3 SV=1 | 19 | 179 | 1.0E-29 |
| sp|Q9YB58|RS4_AERPE | 30S ribosomal protein S4 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps4 PE=3 SV=2 | 19 | 178 | 3.0E-29 |
| sp|C3N8R6|RS4_SULIY | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|C3NMQ2|RS4_SULIN | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|C3MZ03|RS4_SULIM | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|C3MJP5|RS4_SULIL | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|C4KJ91|RS4_SULIK | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|C3N052|RS4_SULIA | 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.16.27) GN=rps4 PE=3 SV=1 | 19 | 194 | 8.0E-29 |
| sp|Q9HJD7|RS4_THEAC | 30S ribosomal protein S4 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rps4 PE=3 SV=1 | 19 | 207 | 2.0E-28 |
| sp|B8GEG7|RS4_METPE | 30S ribosomal protein S4 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4 PE=3 SV=1 | 19 | 183 | 3.0E-28 |
| sp|Q8TRR1|RS4_METAC | 30S ribosomal protein S4 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4 PE=3 SV=1 | 19 | 178 | 3.0E-28 |
| sp|P49214|RS9_TOBAC | 40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=2 SV=1 | 133 | 190 | 6.0E-28 |
| sp|A4FWL4|RS4_METM5 | 30S ribosomal protein S4 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4 PE=3 SV=1 | 19 | 180 | 4.0E-27 |
| sp|A6VGQ7|RS4_METM7 | 30S ribosomal protein S4 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4 PE=3 SV=1 | 19 | 180 | 4.0E-27 |
| sp|Q8PV18|RS4_METMA | 30S ribosomal protein S4 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rps4 PE=3 SV=1 | 19 | 180 | 7.0E-27 |
| sp|A6UW05|RS4_META3 | 30S ribosomal protein S4 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4 PE=3 SV=1 | 19 | 180 | 8.0E-27 |
| sp|O26142|RS4_METTH | 30S ribosomal protein S4 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rps4 PE=3 SV=1 | 19 | 178 | 9.0E-27 |
| sp|Q97B95|RS4_THEVO | 30S ribosomal protein S4 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps4 PE=3 SV=1 | 19 | 180 | 1.0E-26 |
| sp|A5UN53|RS4_METS3 | 30S ribosomal protein S4 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4 PE=3 SV=1 | 19 | 195 | 2.0E-26 |
| sp|Q0W1V5|RS4_METAR | 30S ribosomal protein S4 OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=rps4 PE=3 SV=1 | 19 | 178 | 3.0E-26 |
| sp|P61993|RS4_PYRFU | 30S ribosomal protein S4 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps4 PE=1 SV=1 | 19 | 197 | 4.0E-26 |
| sp|P61992|RS4_PYRAB | 30S ribosomal protein S4 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rps4 PE=3 SV=1 | 19 | 197 | 4.0E-26 |
| sp|O59306|RS4_PYRHO | 30S ribosomal protein S4 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rps4 PE=3 SV=1 | 19 | 197 | 5.0E-26 |
| sp|P95987|RS4_SULSO | 30S ribosomal protein S4 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rps4 PE=3 SV=1 | 19 | 183 | 1.0E-25 |
| sp|A9A9Z3|RS4_METM6 | 30S ribosomal protein S4 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4 PE=3 SV=1 | 19 | 180 | 2.0E-25 |
| sp|C5A251|RS4_THEGJ | 30S ribosomal protein S4 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4 PE=3 SV=1 | 19 | 197 | 3.0E-25 |
| sp|A6UPW5|RS4_METVS | 30S ribosomal protein S4 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4 PE=3 SV=1 | 19 | 179 | 3.0E-25 |
| sp|Q12ZR5|RS4_METBU | 30S ribosomal protein S4 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rps4 PE=3 SV=1 | 19 | 178 | 4.0E-25 |
| sp|Q3IQT8|RS4_NATPD | 30S ribosomal protein S4 OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=rps4 PE=3 SV=1 | 23 | 178 | 4.0E-25 |
| sp|Q6LXN0|RS4_METMP | 30S ribosomal protein S4 OS=Methanococcus maripaludis (strain S2 / LL) GN=rps4 PE=3 SV=1 | 19 | 180 | 8.0E-25 |
| sp|C6A1B1|RS4_THESM | 30S ribosomal protein S4 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4 PE=3 SV=1 | 19 | 186 | 9.0E-25 |
| sp|Q5JJF2|RS4_THEKO | 30S ribosomal protein S4 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rps4 PE=3 SV=1 | 19 | 197 | 2.0E-24 |
| sp|A8MDS5|RS4_CALMQ | 30S ribosomal protein S4 OS=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) GN=rps4 PE=3 SV=1 | 16 | 176 | 3.0E-24 |
| sp|Q9HQJ6|RS4_HALSA | 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rps4 PE=3 SV=1 | 19 | 172 | 3.0E-24 |
| sp|B0R4Y0|RS4_HALS3 | 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4 PE=3 SV=1 | 19 | 172 | 3.0E-24 |
| sp|B6YSQ1|RS4_THEON | 30S ribosomal protein S4 OS=Thermococcus onnurineus (strain NA1) GN=rps4 PE=3 SV=1 | 19 | 197 | 4.0E-24 |
| sp|Q74NF7|RS4_NANEQ | 30S ribosomal protein S4 OS=Nanoarchaeum equitans (strain Kin4-M) GN=rps4 PE=3 SV=1 | 29 | 198 | 1.0E-23 |
| sp|A9A436|RS4_NITMS | 30S ribosomal protein S4 OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4 PE=3 SV=1 | 19 | 204 | 2.0E-22 |
| sp|Q8ZTV1|RS4_PYRAE | 30S ribosomal protein S4 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rps4 PE=3 SV=1 | 45 | 162 | 2.0E-22 |
| sp|Q2NFZ4|RS4_METST | 30S ribosomal protein S4 OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=rps4 PE=3 SV=1 | 19 | 172 | 2.0E-22 |
| sp|Q18G54|RS4_HALWD | 30S ribosomal protein S4 OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=rps4 PE=3 SV=1 | 17 | 186 | 4.0E-22 |
| sp|B1L795|RS4_KORCO | 30S ribosomal protein S4 OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4 PE=3 SV=1 | 20 | 171 | 5.0E-22 |
| sp|B1Y9B8|RS4_PYRNV | 30S ribosomal protein S4 OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4 PE=3 SV=1 | 45 | 162 | 7.0E-22 |
| sp|Q00862|RS4_HALMA | 30S ribosomal protein S4 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps4 PE=3 SV=1 | 23 | 178 | 7.0E-22 |
| sp|A4WM27|RS4_PYRAR | 30S ribosomal protein S4 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4 PE=3 SV=1 | 45 | 162 | 3.0E-21 |
| sp|A1RT03|RS4_PYRIL | 30S ribosomal protein S4 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rps4 PE=3 SV=1 | 45 | 172 | 3.0E-21 |
| sp|A0RY02|RS4_CENSY | 30S ribosomal protein S4 OS=Cenarchaeum symbiosum (strain A) GN=rps4 PE=3 SV=1 | 16 | 180 | 3.0E-21 |
| sp|A3CWH7|RS4_METMJ | 30S ribosomal protein S4 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4 PE=3 SV=1 | 19 | 178 | 7.0E-21 |
| sp|A3MUS9|RS4_PYRCJ | 30S ribosomal protein S4 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4 PE=3 SV=1 | 45 | 162 | 1.0E-20 |
| sp|A4YIN4|RS4_METS5 | 30S ribosomal protein S4 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4 PE=3 SV=1 | 19 | 183 | 6.0E-19 |
| sp|Q921Y2|IMP3_MOUSE | U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1 | 41 | 162 | 2.0E-10 |
| sp|Q3T0M3|IMP3_BOVIN | U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1 | 41 | 162 | 1.0E-09 |
| sp|B9MKF4|RS4_CALBD | 30S ribosomal protein S4 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpsD PE=3 SV=1 | 20 | 171 | 7.0E-09 |
| sp|P32899|IMP3_YEAST | U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1 SV=1 | 41 | 176 | 9.0E-09 |
| sp|A4XLQ3|RS4_CALS8 | 30S ribosomal protein S4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=rpsD PE=3 SV=1 | 20 | 162 | 2.0E-08 |
| sp|O13835|IMP3_SCHPO | U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1 | 48 | 162 | 3.0E-08 |
| sp|Q9NV31|IMP3_HUMAN | U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1 | 41 | 162 | 5.0E-08 |
| sp|C0ZHK9|RS4_BREBN | 30S ribosomal protein S4 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rpsD PE=3 SV=1 | 46 | 163 | 8.0E-08 |
| sp|P36447|RR4_ANTOD | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Anthoxanthum odoratum GN=rps4 PE=3 SV=1 | 118 | 186 | 4.0E-07 |
| sp|Q74K05|RS4_LACJO | 30S ribosomal protein S4 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsD PE=3 SV=1 | 46 | 164 | 4.0E-07 |
| sp|Q042M7|RS4_LACGA | 30S ribosomal protein S4 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 11718 / AM63) GN=rpsD PE=3 SV=2 | 46 | 164 | 4.0E-07 |
| sp|Q2RFS5|RS4_MOOTA | 30S ribosomal protein S4 OS=Moorella thermoacetica (strain ATCC 39073) GN=rpsD PE=3 SV=1 | 20 | 163 | 8.0E-07 |
| sp|Q03EN4|RS4_PEDPA | 30S ribosomal protein S4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsD PE=3 SV=1 | 46 | 164 | 1.0E-06 |
| sp|A0T0H2|RR4_PHATC | 30S ribosomal protein S4, chloroplastic OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=rps4 PE=3 SV=1 | 110 | 165 | 1.0E-06 |
| sp|Q2LQD0|RS4_SYNAS | 30S ribosomal protein S4 OS=Syntrophus aciditrophicus (strain SB) GN=rpsD PE=3 SV=1 | 118 | 164 | 1.0E-06 |
| sp|P36472|RR4_STICA | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Stipa capensis GN=rps4 PE=3 SV=1 | 117 | 186 | 2.0E-06 |
| sp|Q8A4A1|RS4_BACTN | 30S ribosomal protein S4 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=rpsD PE=3 SV=1 | 46 | 163 | 2.0E-06 |
| sp|P69636|RR4_BRASY | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Brachypodium sylvaticum GN=rps4 PE=3 SV=1 | 117 | 186 | 4.0E-06 |
| sp|P69635|RR4_BRAPI | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Brachypodium pinnatum GN=rps4 PE=3 SV=1 | 117 | 186 | 4.0E-06 |
| sp|P36466|RR4_MELUN | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Melica uniflora GN=rps4 PE=3 SV=1 | 117 | 186 | 4.0E-06 |
| sp|P36465|RR4_MELAL | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Melica altissima GN=rps4 PE=3 SV=1 | 117 | 186 | 4.0E-06 |
| sp|P36464|RR4_LYGSP | 30S ribosomal protein S4, chloroplastic (Fragment) OS=Lygeum spartum GN=rps4 PE=3 SV=1 | 117 | 186 | 4.0E-06 |
| sp|Q64NN4|RS4_BACFR | 30S ribosomal protein S4 OS=Bacteroides fragilis (strain YCH46) GN=rpsD PE=3 SV=1 | 46 | 163 | 4.0E-06 |
| sp|Q5L8D5|RS4_BACFN | 30S ribosomal protein S4 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) GN=rpsD PE=3 SV=1 | 46 | 163 | 4.0E-06 |
| sp|A3DJK0|RS4_CLOTH | 30S ribosomal protein S4 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=rpsD PE=3 SV=1 | 46 | 183 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0019843 | rRNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2101 MQWRASSVSGFRACSKMPPRAYSKTSRVPRRPFEAARLDSELKLVGEYGLRNKREVWRVGLTLSKIRRAARQLLT LDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKIEDFLERRLQTCVYKLGLAKSIHHARVLIRQRHIRV GKQIVNVPSFIVRLDSQKHIDFALNSPFGSGRPGRVRRKKAKAAEGGAEGEEEEDDE* |
| Coding | >Hirsu2|2101 ATGCAGTGGCGCGCCTCTTCTGTGTCTGGCTTTAGGGCTTGCTCCAAGATGCCTCCTCGCGCGTATTCAAAGACC TCTCGTGTCCCCCGCAGACCCTTTGAGGCTGCTCGATTGGACTCGGAGTTGAAGCTTGTCGGAGAGTATGGCCTG CGCAACAAGCGTGAGGTGTGGCGCGTCGGCCTGACACTGTCCAAGATCCGTCGAGCTGCCCGTCAGCTTCTGACC CTCGACGAGAAGGACCCCAAGCGTCTCTTCGAAGGCAATGCCCTCATTCGCCGTCTCGTCCGCGTCGGTGTGCTC GACGAGTCTCGCATGAAGCTCGATTACGTGCTGGCCCTGAAGATCGAGGATTTCTTGGAGCGTCGTCTGCAGACC TGCGTTTACAAGCTCGGTCTCGCCAAATCCATCCACCACGCCCGCGTCCTGATCCGCCAGCGCCACATCCGCGTC GGCAAGCAGATCGTCAACGTCCCCTCCTTCATCGTCCGTCTCGACTCCCAGAAGCACATCGACTTCGCCCTGAAC TCGCCCTTCGGCAGCGGCCGTCCCGGCCGTGTCCGCAGAAAGAAGGCCAAGGCCGCCGAGGGTGGCGCCGAGGGT GAGGAGGAGGAAGACGACGAATGA |
| Transcript | >Hirsu2|2101 ATGCAGTGGCGCGCCTCTTCTGTGTCTGGCTTTAGGGCTTGCTCCAAGATGCCTCCTCGCGCGTATTCAAAGACC TCTCGTGTCCCCCGCAGACCCTTTGAGGCTGCTCGATTGGACTCGGAGTTGAAGCTTGTCGGAGAGTATGGCCTG CGCAACAAGCGTGAGGTGTGGCGCGTCGGCCTGACACTGTCCAAGATCCGTCGAGCTGCCCGTCAGCTTCTGACC CTCGACGAGAAGGACCCCAAGCGTCTCTTCGAAGGCAATGCCCTCATTCGCCGTCTCGTCCGCGTCGGTGTGCTC GACGAGTCTCGCATGAAGCTCGATTACGTGCTGGCCCTGAAGATCGAGGATTTCTTGGAGCGTCGTCTGCAGACC TGCGTTTACAAGCTCGGTCTCGCCAAATCCATCCACCACGCCCGCGTCCTGATCCGCCAGCGCCACATCCGCGTC GGCAAGCAGATCGTCAACGTCCCCTCCTTCATCGTCCGTCTCGACTCCCAGAAGCACATCGACTTCGCCCTGAAC TCGCCCTTCGGCAGCGGCCGTCCCGGCCGTGTCCGCAGAAAGAAGGCCAAGGCCGCCGAGGGTGGCGCCGAGGGT GAGGAGGAGGAAGACGACGAATGA |
| Gene | >Hirsu2|2101 ATGCAGTGGCGCGCCTCTTCTGTGTCTGGCTTTAGGGCTTGCTGTTCGGGCTGCACGTGACTTCGGTCCGCGAAA TTTCCCACCCCACAAGTAGCAGCCTCGAACATTTTCAACATTACGTGCAACTCGTCATCTCCAGCTAACACCACA GGAGCAAGCCAAGTGAGTTCAAATCGCCGGTCGCCGGCTGCGACGATTAGTTGACAAGGGCCCAGGATGCCTCCT CGCGCGTATTCAAAGACCTCTCGTGTCCCCCGCAGACCCTTTGAGGCTGCTCGATTGTCAGTATCACCGGCCACT GAACATGAGCTTGACTCTGTTTAAGTCGAATGTGATGGCGGACTGACCCAGGAAATAATAGGGACTCGGAGTTGA AGCTTGTCGGAGAGTATGGCCTGCGCAACAAGCGTGAGGTGTGGCGCGTCGGCCTGACACTGTCCAAGATCCGTC GAGCTGCCCGGTAAGAGGGACCTTGCGAGCGGGAAAGACGGTGCAGGGCGACGAGTGCTAACTCGATCGCAGTCA GCTTCTGACCCTCGACGAGAAGGACCCCAAGCGTCTCTTCGAAGGCAATGCCCTCATTCGCCGTCTCGTCCGCGT CGGTGTGCTCGACGAGTCTCGCATGAAGCTCGATTACGTGCTGGCCCTGAAGATCGAGGATTTCTTGGAGCGTCG TCTGCAGACCTGCGTTTACAAGCTCGGTCTCGCCAAATCCATCCACCACGCCCGCGTCCTGATCCGCCAGCGCCA CATCCGCGTCGGCAAGCAGATCGTCAACGTCCCCTCCTTCATCGTCCGTCTCGACTCCCAGAAGCACATCGACTT CGCCCTGAACTCGCCCTTCGGCAGCGGCCGTCCCGGCCGTGTCCGCAGAAAGAAGGCCAAGGCCGCCGAGGGTGG CGCCGAGGGTGAGGAGGAGGAAGACGACGAATGA |