Protein ID | Hirsu2|2100 |
Gene name | |
Location | Contig_149:25679..26362 |
Strand | - |
Gene length (bp) | 683 |
Transcript length (bp) | 483 |
Coding sequence length (bp) | 483 |
Protein length (aa) | 161 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01157 | Ribosomal_L21e | Ribosomal protein L21e | 5.4E-46 | 1 | 101 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9UUC1|RL21A_SCHPO | 60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2101 PE=3 SV=1 | 1 | 160 | 7.0E-69 |
sp|O42706|RL21B_SCHPO | 60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2102 PE=2 SV=2 | 1 | 160 | 1.0E-68 |
sp|Q02753|RL21A_YEAST | 60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1 | 1 | 160 | 1.0E-68 |
sp|Q12672|RL21B_YEAST | 60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1 | 1 | 160 | 4.0E-68 |
sp|A5JSS2|RL21_CAPHI | 60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1 | 1 | 157 | 1.0E-57 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9UUC1|RL21A_SCHPO | 60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2101 PE=3 SV=1 | 1 | 160 | 7.0E-69 |
sp|O42706|RL21B_SCHPO | 60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2102 PE=2 SV=2 | 1 | 160 | 1.0E-68 |
sp|Q02753|RL21A_YEAST | 60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1 | 1 | 160 | 1.0E-68 |
sp|Q12672|RL21B_YEAST | 60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1 | 1 | 160 | 4.0E-68 |
sp|A5JSS2|RL21_CAPHI | 60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1 | 1 | 157 | 1.0E-57 |
sp|P46778|RL21_HUMAN | 60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2 | 1 | 157 | 6.0E-57 |
sp|Q6QN05|RL21_CHILA | 60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3 | 1 | 157 | 3.0E-56 |
sp|P34334|RL21_CAEEL | 60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3 | 1 | 157 | 2.0E-55 |
sp|P20280|RL21_RAT | 60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3 | 1 | 157 | 2.0E-55 |
sp|O09167|RL21_MOUSE | 60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=1 SV=3 | 1 | 157 | 3.0E-55 |
sp|Q43291|RL211_ARATH | 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2 | 1 | 157 | 4.0E-47 |
sp|O82574|RL21_CYAPA | 60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1 | 1 | 160 | 7.0E-46 |
sp|Q9FDZ9|RL212_ARATH | 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1 | 1 | 157 | 7.0E-46 |
sp|P49667|RL21_PYUST | 60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2 | 1 | 157 | 6.0E-45 |
sp|Q54X53|RL21_DICDI | 60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1 | 1 | 160 | 2.0E-43 |
sp|Q23TC8|RL21_TETTS | 60S ribosomal protein L21 OS=Tetrahymena thermophila (strain SB210) GN=RPL21 PE=1 SV=3 | 1 | 138 | 2.0E-36 |
sp|Q8SRW8|RL21_ENCCU | 60S ribosomal protein L21 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPL21 PE=3 SV=1 | 4 | 156 | 1.0E-34 |
sp|P38653|RL21_ENTHI | 60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2 | 1 | 157 | 2.0E-30 |
sp|P49666|RL21_PIG | 60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=2 SV=2 | 1 | 62 | 1.0E-18 |
sp|A7I9H8|RL21_METB6 | 50S ribosomal protein L21e OS=Methanoregula boonei (strain 6A8) GN=rpl21e PE=3 SV=1 | 1 | 64 | 8.0E-13 |
sp|Q6M125|RL21_METMP | 50S ribosomal protein L21e OS=Methanococcus maripaludis (strain S2 / LL) GN=rpl21e PE=3 SV=1 | 1 | 100 | 1.0E-12 |
sp|A6UR83|RL21_METVS | 50S ribosomal protein L21e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl21e PE=3 SV=1 | 1 | 100 | 2.0E-12 |
sp|A4G096|RL21_METM5 | 50S ribosomal protein L21e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl21e PE=3 SV=1 | 1 | 100 | 1.0E-11 |
sp|A6VI82|RL21_METM7 | 50S ribosomal protein L21e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl21e PE=3 SV=1 | 1 | 100 | 1.0E-11 |
sp|A9A8J8|RL21_METM6 | 50S ribosomal protein L21e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl21e PE=3 SV=1 | 1 | 100 | 1.0E-11 |
sp|A3DML6|RL21_STAMF | 50S ribosomal protein L21e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1) GN=rpl21e PE=3 SV=1 | 6 | 101 | 4.0E-11 |
sp|B8GEV3|RL21_METPE | 50S ribosomal protein L21e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl21e PE=3 SV=1 | 1 | 100 | 5.0E-11 |
sp|A3CWY7|RL21_METMJ | 50S ribosomal protein L21e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl21e PE=3 SV=1 | 1 | 64 | 1.0E-10 |
sp|Q975F2|RL21_SULTO | 50S ribosomal protein L21e OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpl21e PE=3 SV=1 | 3 | 64 | 7.0E-10 |
sp|A6UT27|RL21_META3 | 50S ribosomal protein L21e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl21e PE=3 SV=1 | 1 | 101 | 9.0E-10 |
sp|Q2FS99|RL21_METHJ | 50S ribosomal protein L21e OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rpl21e PE=3 SV=1 | 1 | 64 | 4.0E-09 |
sp|Q0W2E9|RL21_METAR | 50S ribosomal protein L21e OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=rpl21e PE=3 SV=1 | 1 | 101 | 5.0E-09 |
sp|Q6L228|RL21_PICTO | 50S ribosomal protein L21e OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rpl21e PE=3 SV=1 | 4 | 71 | 1.0E-08 |
sp|Q12XH4|RL21_METBU | 50S ribosomal protein L21e OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rpl21e PE=3 SV=1 | 1 | 64 | 2.0E-08 |
sp|P54013|RL21_METJA | 50S ribosomal protein L21e OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpl21e PE=3 SV=2 | 4 | 99 | 2.0E-07 |
sp|P58077|RL21_AERPE | 50S ribosomal protein L21e OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl21e PE=3 SV=1 | 6 | 77 | 2.0E-07 |
sp|Q4JB11|RL21_SULAC | 50S ribosomal protein L21e OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpl21e PE=3 SV=1 | 4 | 64 | 3.0E-07 |
sp|Q8PU21|RL21_METMA | 50S ribosomal protein L21e OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rpl21e PE=3 SV=1 | 1 | 64 | 4.0E-07 |
sp|Q8TQU3|RL21_METAC | 50S ribosomal protein L21e OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl21e PE=3 SV=1 | 1 | 64 | 4.0E-07 |
sp|Q8TUU3|RL21_METKA | 50S ribosomal protein L21e OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl21e PE=3 SV=1 | 4 | 103 | 5.0E-07 |
sp|Q466S9|RL21_METBF | 50S ribosomal protein L21e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl21e PE=3 SV=1 | 1 | 64 | 6.0E-07 |
sp|Q9UXE0|RL21_SULSO | 50S ribosomal protein L21e OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpl21e PE=3 SV=1 | 3 | 101 | 7.0E-07 |
sp|A0B7V4|RL21_METTP | 50S ribosomal protein L21e OS=Methanosaeta thermophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) GN=rpl21e PE=3 SV=1 | 1 | 64 | 2.0E-06 |
sp|C3NHD9|RL21_SULIN | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl21e PE=3 SV=1 | 3 | 96 | 4.0E-06 |
sp|C3MVE8|RL21_SULIM | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl21e PE=3 SV=1 | 3 | 96 | 4.0E-06 |
sp|C3MQ30|RL21_SULIL | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl21e PE=3 SV=1 | 3 | 96 | 4.0E-06 |
sp|C4KHC6|RL21_SULIK | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl21e PE=3 SV=1 | 3 | 96 | 4.0E-06 |
sp|C3N5P7|RL21_SULIA | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl21e PE=3 SV=1 | 3 | 96 | 4.0E-06 |
sp|C3NEB3|RL21_SULIY | 50S ribosomal protein L21e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl21e PE=3 SV=1 | 3 | 62 | 8.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006412 | translation | Yes |
GO:0003735 | structural constituent of ribosome | Yes |
GO:0005840 | ribosome | Yes |
GO:0034645 | cellular macromolecule biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0043228 | non-membrane-bounded organelle | No |
GO:0009058 | biosynthetic process | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0043226 | organelle | No |
GO:0043232 | intracellular non-membrane-bounded organelle | No |
GO:0019538 | protein metabolic process | No |
GO:0044271 | cellular nitrogen compound biosynthetic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0043229 | intracellular organelle | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0009987 | cellular process | No |
GO:0043043 | peptide biosynthetic process | No |
GO:0005198 | structural molecule activity | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0043603 | cellular amide metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:1901566 | organonitrogen compound biosynthetic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0110165 | cellular anatomical entity | No |
GO:0003674 | molecular_function | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0005575 | cellular_component | No |
GO:0044237 | cellular metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0006518 | peptide metabolic process | No |
GO:0043604 | amide biosynthetic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.5804 | 0.4861 | 0.0317 | 0.0623 | 0.4053 | 0.0358 | 0.2088 | 0.0727 | 0.0104 | 0.0006 |
Orthofinder run ID | 4 |
Orthogroup | 1952 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2100 MGHSYGKRAGTRYAFSRNFRQKGMIALNTYLKQYRVGDIVDIKVNGAVQKGMPYKVYHGKTGVVYNVTKSAVGVI IYKKVWHRYIEKRINVRIEHIQPSRSREDFLKRVKSNAEAKKKARAEGVTVQVKRQPVLPREARTVSLTDNPPET VTPLPYETTI* |
Coding | >Hirsu2|2100 ATGGGTCACTCTTACGGAAAGAGGGCGGGCACCCGCTATGCCTTCAGCAGGAACTTCCGCCAGAAGGGCATGATC GCCCTGAACACGTACCTGAAGCAGTACCGTGTGGGCGATATCGTCGACATCAAGGTCAACGGTGCGGTTCAAAAG GGCATGCCCTACAAGGTCTACCACGGCAAGACCGGTGTTGTTTACAACGTCACAAAGAGCGCCGTCGGTGTCATC ATCTACAAGAAGGTCTGGCACCGGTACATCGAGAAGCGCATCAACGTCCGGATCGAGCACATCCAGCCCTCCCGG TCCCGCGAGGACTTCCTCAAGCGAGTCAAGTCGAATGCCGAAGCGAAGAAGAAGGCCCGCGCCGAGGGCGTCACC GTCCAAGTCAAGCGTCAACCTGTTCTGCCCCGCGAGGCCCGCACCGTCTCCCTGACCGACAACCCTCCCGAGACT GTCACTCCTCTGCCTTACGAGACCACGATTTAA |
Transcript | >Hirsu2|2100 ATGGGTCACTCTTACGGAAAGAGGGCGGGCACCCGCTATGCCTTCAGCAGGAACTTCCGCCAGAAGGGCATGATC GCCCTGAACACGTACCTGAAGCAGTACCGTGTGGGCGATATCGTCGACATCAAGGTCAACGGTGCGGTTCAAAAG GGCATGCCCTACAAGGTCTACCACGGCAAGACCGGTGTTGTTTACAACGTCACAAAGAGCGCCGTCGGTGTCATC ATCTACAAGAAGGTCTGGCACCGGTACATCGAGAAGCGCATCAACGTCCGGATCGAGCACATCCAGCCCTCCCGG TCCCGCGAGGACTTCCTCAAGCGAGTCAAGTCGAATGCCGAAGCGAAGAAGAAGGCCCGCGCCGAGGGCGTCACC GTCCAAGTCAAGCGTCAACCTGTTCTGCCCCGCGAGGCCCGCACCGTCTCCCTGACCGACAACCCTCCCGAGACT GTCACTCCTCTGCCTTACGAGACCACGATTTAA |
Gene | >Hirsu2|2100 ATGGGTCACTCTTACGGAAAGAGGGCGGGCACCCGCGTACGTTGGCGCACTTCCTCGATCATCGAACACGGCGAC TTACAGAGAGGTCACAGTATGCCTTCAGCAGGAACTTCCGCCAGAAGGGCATGATCGCCCTGAACACGTACCTGA AGCAGTACCGGTCAGTGGCTTGGAGTCGGACGGGACGAGGCATTGGCTTCTGACTGATGGAAATAGTGTGGGCGA TATCGTCGACATCAAGGTCAACGGTGCGGTTCAAAAGGGGTAAGCAATACCGAAACTCTACCCCGGCCCTGCAGA CGGAGCAGGAAATGACGCTGCGCATCGGGCATCACGACTGACTGTTGCGCAGCATGCCCTACAAGGTCTACCACG GCAAGACCGGTGTTGTTTACAACGTCACAAAGAGCGCCGTCGGTGTCATCATCTACAAGAAGGTCTGGCACCGGT ACATCGAGAAGCGCATCAACGTCCGGATCGAGCACATCCAGCCCTCCCGGTCCCGCGAGGACTTCCTCAAGCGAG TCAAGTCGAATGCCGAAGCGAAGAAGAAGGCCCGCGCCGAGGGCGTCACCGTCCAAGTCAAGCGTCAACCTGTTC TGCCCCGCGAGGCCCGCACCGTCTCCCTGACCGACAACCCTCCCGAGACTGTCACTCCTCTGCCTTACGAGACCA CGATTTAA |