© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2095 |
| Gene name | |
| Location | Contig_149:8384..9894 |
| Strand | + |
| Gene length (bp) | 1510 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17043 | MAT1-1-2 | Mating type protein 1-1-2 of unknown function | 1.4E-29 | 178 | 323 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5081 | 0.537 | 0.2896 | 0.0773 | 0.3243 | 0.1322 | 0.1218 | 0.1967 | 0.214 | 0.1726 |
| Orthofinder run ID | 4 |
| Orthogroup | 6548 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2095 MESICAFEPFWKRSDVVSAAHDAIKDIRVRSLNIYLEKHKGESPPPLSVDTAISECLDTVKILFSDSKIDNHILK RIRDIGIHQHIDEMEVVWGVLAMWYSSAAPAVARDPLQGFHPSARNEVDDHGTEFEPWSRRFASKRHNWANLGII AILMTSESWVPPVHPLLKAGSLISRSVTTFLFAASLIGMDMLEEPWAHCLELTRREEATKLFFRAVWSVTRENFD ILGATTPGIEFGTTLDEVRVKSNGKSITTNLGRRSFYCPPFWHPVRKVPGSSWNKFLKNHRQPMFPESSSRLPGF LLQIPGSLRTLAQPFETYYTDLRSRFDEKERPRRLLSQEAKTRQFHRLAEATGSSYPNLELSEDTATLAEEPEQE YMYKVPMVKKPMTDLKGHLTFHFMNTLVRAWRFQEEPDEVDTEFYIMSFER* |
| Coding | >Hirsu2|2095 ATGGAGAGTATCTGCGCATTTGAGCCCTTCTGGAAGCGCTCTGACGTGGTATCGGCAGCCCATGATGCCATAAAG GATATTCGCGTGAGATCTCTCAATATTTACCTCGAAAAACACAAAGGCGAATCTCCTCCTCCTTTGAGTGTCGAC ACTGCTATTTCGGAGTGTCTAGACACTGTCAAAATCCTTTTTAGCGACTCAAAAATCGACAACCACATTCTTAAG CGCATCCGTGATATCGGGATCCATCAGCACATCGACGAAATGGAGGTTGTTTGGGGAGTTTTAGCCATGTGGTAC TCAAGTGCCGCTCCCGCCGTCGCACGAGACCCTCTCCAGGGATTTCATCCAAGCGCTCGGAATGAAGTCGACGAC CATGGCACGGAATTTGAGCCGTGGAGCCGAAGATTTGCTTCGAAGCGACACAACTGGGCTAACTTAGGCATTATT GCCATTTTGATGACTTCGGAGAGCTGGGTTCCGCCAGTTCATCCGCTTCTTAAAGCTGGTTCTCTCATCTCAAGA TCCGTCACTACGTTTCTCTTCGCTGCCTCCTTGATTGGTATGGATATGCTGGAGGAACCCTGGGCTCACTGTCTG GAGTTGACAAGACGGGAGGAGGCCACGAAGCTCTTCTTCAGAGCGGTATGGTCAGTGACACGCGAGAACTTCGAC ATTCTTGGCGCTACAACGCCAGGAATTGAGTTTGGTACGACGTTGGACGAAGTGAGGGTCAAGTCCAACGGCAAG TCTATCACAACAAACCTTGGGCGTCGGTCATTTTATTGTCCACCGTTTTGGCATCCGGTCCGCAAGGTTCCTGGG TCATCTTGGAACAAATTCTTGAAGAATCACCGCCAGCCAATGTTTCCGGAGTCGTCATCACGGCTTCCTGGCTTT CTCCTTCAAATTCCCGGTTCATTGCGCACACTAGCGCAACCATTTGAGACTTATTATACTGATTTGCGTTCTCGA TTCGATGAGAAAGAGCGTCCTCGGCGTCTTCTCTCCCAGGAAGCGAAAACTCGACAGTTTCATCGTCTTGCTGAA GCAACTGGCAGCAGCTATCCCAACCTGGAACTATCTGAGGACACAGCTACGCTTGCTGAGGAGCCAGAACAAGAA TATATGTATAAAGTGCCGATGGTCAAGAAGCCGATGACTGATTTGAAAGGTCATTTGACATTCCACTTCATGAAT ACTCTTGTCAGGGCTTGGAGATTCCAGGAGGAGCCGGATGAAGTTGACACAGAGTTCTACATCATGTCTTTCGAG CGTTAA |
| Transcript | >Hirsu2|2095 ATGGAGAGTATCTGCGCATTTGAGCCCTTCTGGAAGCGCTCTGACGTGGTATCGGCAGCCCATGATGCCATAAAG GATATTCGCGTGAGATCTCTCAATATTTACCTCGAAAAACACAAAGGCGAATCTCCTCCTCCTTTGAGTGTCGAC ACTGCTATTTCGGAGTGTCTAGACACTGTCAAAATCCTTTTTAGCGACTCAAAAATCGACAACCACATTCTTAAG CGCATCCGTGATATCGGGATCCATCAGCACATCGACGAAATGGAGGTTGTTTGGGGAGTTTTAGCCATGTGGTAC TCAAGTGCCGCTCCCGCCGTCGCACGAGACCCTCTCCAGGGATTTCATCCAAGCGCTCGGAATGAAGTCGACGAC CATGGCACGGAATTTGAGCCGTGGAGCCGAAGATTTGCTTCGAAGCGACACAACTGGGCTAACTTAGGCATTATT GCCATTTTGATGACTTCGGAGAGCTGGGTTCCGCCAGTTCATCCGCTTCTTAAAGCTGGTTCTCTCATCTCAAGA TCCGTCACTACGTTTCTCTTCGCTGCCTCCTTGATTGGTATGGATATGCTGGAGGAACCCTGGGCTCACTGTCTG GAGTTGACAAGACGGGAGGAGGCCACGAAGCTCTTCTTCAGAGCGGTATGGTCAGTGACACGCGAGAACTTCGAC ATTCTTGGCGCTACAACGCCAGGAATTGAGTTTGGTACGACGTTGGACGAAGTGAGGGTCAAGTCCAACGGCAAG TCTATCACAACAAACCTTGGGCGTCGGTCATTTTATTGTCCACCGTTTTGGCATCCGGTCCGCAAGGTTCCTGGG TCATCTTGGAACAAATTCTTGAAGAATCACCGCCAGCCAATGTTTCCGGAGTCGTCATCACGGCTTCCTGGCTTT CTCCTTCAAATTCCCGGTTCATTGCGCACACTAGCGCAACCATTTGAGACTTATTATACTGATTTGCGTTCTCGA TTCGATGAGAAAGAGCGTCCTCGGCGTCTTCTCTCCCAGGAAGCGAAAACTCGACAGTTTCATCGTCTTGCTGAA GCAACTGGCAGCAGCTATCCCAACCTGGAACTATCTGAGGACACAGCTACGCTTGCTGAGGAGCCAGAACAAGAA TATATGTATAAAGTGCCGATGGTCAAGAAGCCGATGACTGATTTGAAAGGTCATTTGACATTCCACTTCATGAAT ACTCTTGTCAGGGCTTGGAGATTCCAGGAGGAGCCGGATGAAGTTGACACAGAGTTCTACATCATGTCTTTCGAG CGTTAA |
| Gene | >Hirsu2|2095 ATGGAGAGTATCTGCGCATTTGAGCCCTTCTGGAAGCGCTCTGACGTGGTATCGGCAGCCCATGATGCCATAAAG GATATTCGCGTGAGATCTCTCAATATTTACCTCGAAAAACACAAAGGCGAATCTCCTCCTCCTTTGAGTGTCGAC AGTAAGTTTTGCATTATGCTTTGCCTATGGCTGTTCGCTAAGCAAGATTTTACCTCTAGCTGCTATTTCGGAGTG TCTAGACACTGTCAAAATCCTTTTTAGCGACTCAAAAATCGACAACCACATTCTTAAGCGCATCCGTGATATCGG GATCCATCAGCACATCGACGAAATGGAGGTTGTTTGGGGAGTTTTAGCCATGTGGTACTCAAGTGCCGCTCCCGC CGTCGCACGAGACCCTCTCCAGGGATTTCATCCAAGCGCTCGGAATGAAGTCGACGACCATGGCACGGAATTTGA GCCGTGGAGCCGAAGATTTGCTTCGAAGCGACACAACTGGGCTAACTTAGGCATTATTGCCATTTTGATGACTTC GGAGAGCTGGGTTCCGCCAGTTCATCCGCTTCTTAAAGCTGGTTCTCTCATCTCAAGATCCGTCACTACGTTTCT CTTCGCTGCCTCCTTGATTGGTATGGATATGCTGGAGGAACCCTGGGCTCACTGTCTGGAGTTGACAAGACGGGA GGAGGCCACGAAGCTCTTCTTCAGAGCGGTATGGTCAGTGACACGCGAGAACTTCGACATTCTTGGCGCTACAAC GCCAGGAATTGAGTTTGGTACGACGTTGGACGAAGTGAGGGTCAAGTCCAACGGCAAGTCTATCACAACAAACCT TGGGCGTCGGTCATTTTATTGTCCACCGTTTTGGCATCCGGTCCGCAAGGTTCCTGGGTCATCTTGGAACAAATT CTTGAAGAATCACCGCCAGCCAATGTTTCCGGAGTCGTCATCACGGCTTCCTGGCTTTCTCCTTCAAATTCCCGG TTCATTGCGCACACTAGCGCAACCATTTGAGACTTATTATACTGATTTGCGTTCTCGATTCGATGAGGTAACCTC TTCCTTGCCTCTTTAATATCGGTAACCCGCTAATGCAACTATTCAGAAAGAGCGTCCTCGGCGTCTTCTCTCCCA GGAAGCGAAAACTCGACAGTTTCATCGTCTTGCTGAAGCAACTGGCAGCAGCTATCCCAACCTGGAACTATCTGA GGACGTAAGTAATGATCACCCAATATTATGCCTACGCTAATTGCGGCTACAGACAGCTACGCTTGCTGAGGAGCC AGAACAAGAATATATGTATAAAGTGCCGATGGTAGGTAATATTGAACCCTTGGTCCCAAATTTGCCAAGAAAACT TGCGCTAAGATTTCCATTGCCACAGGTCAAGAAGCCGATGACTGATTTGAAAGGTCATTTGACATTCCACTTCAT GAATACTCTTGTCAGGGCTTGGAGATTCCAGGAGGAGCCGGATGAAGTTGACACAGAGTTCTACATCATGTCTTT CGAGCGTTAA |