© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2094 |
| Gene name | |
| Location | Contig_149:7345..8088 |
| Strand | - |
| Gene length (bp) | 743 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 585 |
| Protein length (aa) | 195 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00505 | HMG_box | HMG (high mobility group) box | 1.0E-15 | 115 | 183 |
| PF09011 | HMG_box_2 | HMG-box domain | 2.9E-07 | 117 | 171 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08143|SMR2_PODAS | Sporulation minus regulator 2 OS=Podospora anserina GN=SMR2 PE=3 SV=1 | 114 | 189 | 2.0E-15 |
| sp|Q02991|MAT2_COCHE | Mating-type protein MAT-2 OS=Cochliobolus heterostrophus GN=MAT2 PE=3 SV=1 | 69 | 188 | 3.0E-11 |
| sp|Q9P445|MAT2_COCSA | Mating-type protein MAT-2 OS=Cochliobolus sativus GN=MAT2 PE=3 SV=1 | 99 | 188 | 4.0E-11 |
| sp|Q5A220|RFG1_CANAL | Repressor of filamentous growth 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFG1 PE=2 SV=2 | 111 | 193 | 2.0E-10 |
| sp|P0CY16|MTMC3_SCHPO | Silenced mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mat3-Mc PE=3 SV=1 | 104 | 193 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08143|SMR2_PODAS | Sporulation minus regulator 2 OS=Podospora anserina GN=SMR2 PE=3 SV=1 | 114 | 189 | 2.0E-15 |
| sp|Q02991|MAT2_COCHE | Mating-type protein MAT-2 OS=Cochliobolus heterostrophus GN=MAT2 PE=3 SV=1 | 69 | 188 | 3.0E-11 |
| sp|Q9P445|MAT2_COCSA | Mating-type protein MAT-2 OS=Cochliobolus sativus GN=MAT2 PE=3 SV=1 | 99 | 188 | 4.0E-11 |
| sp|Q5A220|RFG1_CANAL | Repressor of filamentous growth 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFG1 PE=2 SV=2 | 111 | 193 | 2.0E-10 |
| sp|P0CY16|MTMC3_SCHPO | Silenced mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mat3-Mc PE=3 SV=1 | 104 | 193 | 2.0E-08 |
| sp|P0CY17|MATMC_SCHPO | Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mat1-Mc PE=2 SV=1 | 104 | 193 | 2.0E-08 |
| sp|C7U331|MATMC_SCHPM | Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe GN=mat3-Mc PE=2 SV=1 | 104 | 193 | 2.0E-08 |
| sp|Q6TC27|SRY_ENHLU | Sex-determining region Y protein OS=Enhydra lutris GN=SRY PE=3 SV=1 | 78 | 188 | 2.0E-08 |
| sp|P35693|FPR1_PODAS | MAT+ sexual cell fertilization-promoting factor OS=Podospora anserina GN=FPR1 PE=3 SV=2 | 102 | 190 | 3.0E-08 |
| sp|Q6TC28|SRY_LUTLU | Sex-determining region Y protein OS=Lutra lutra GN=SRY PE=3 SV=1 | 78 | 193 | 3.0E-08 |
| sp|Q6WRX6|MATMC_SCHKA | Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces kambucha GN=matMc PE=3 SV=1 | 112 | 193 | 7.0E-08 |
| sp|Q28EW4|SOX13_XENTR | Transcription factor Sox-13 OS=Xenopus tropicalis GN=sox13 PE=2 SV=1 | 106 | 184 | 7.0E-08 |
| sp|P40649|SOX13_XENLA | Transcription factor Sox-13 OS=Xenopus laevis GN=sox13 PE=2 SV=3 | 106 | 184 | 2.0E-07 |
| sp|B1H349|SOX6_XENTR | Transcription factor Sox-6 OS=Xenopus tropicalis GN=sox6 PE=2 SV=1 | 114 | 184 | 2.0E-07 |
| sp|Q9UN79|SOX13_HUMAN | Transcription factor SOX-13 OS=Homo sapiens GN=SOX13 PE=1 SV=3 | 111 | 184 | 3.0E-07 |
| sp|O42342|SOX7_XENLA | Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1 | 92 | 188 | 3.0E-07 |
| sp|Q6VVD7|SOX8_XENLA | Transcription factor Sox-8 OS=Xenopus laevis GN=sox8 PE=2 SV=1 | 108 | 194 | 3.0E-07 |
| sp|Q04891|SOX13_MOUSE | Transcription factor SOX-13 OS=Mus musculus GN=Sox13 PE=2 SV=4 | 111 | 184 | 3.0E-07 |
| sp|Q28GD5|SOX7_XENTR | Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1 | 92 | 188 | 3.0E-07 |
| sp|P36981|MATB_NEUCS | Mating-type protein a-1 OS=Neurospora crassa GN=mta-1 PE=1 SV=2 | 111 | 189 | 3.0E-07 |
| sp|P40656|SOX14_DROME | Putative transcription factor SOX-14 OS=Drosophila melanogaster GN=Sox14 PE=2 SV=3 | 82 | 188 | 4.0E-07 |
| sp|B3DM43|SOX5_XENTR | Transcription factor Sox-5 OS=Xenopus tropicalis GN=sox5 PE=2 SV=1 | 109 | 184 | 4.0E-07 |
| sp|P35712|SOX6_HUMAN | Transcription factor SOX-6 OS=Homo sapiens GN=SOX6 PE=1 SV=3 | 114 | 184 | 5.0E-07 |
| sp|P35711|SOX5_HUMAN | Transcription factor SOX-5 OS=Homo sapiens GN=SOX5 PE=1 SV=3 | 109 | 184 | 5.0E-07 |
| sp|Q5RCU4|SOX6_PONAB | Transcription factor SOX-6 OS=Pongo abelii GN=SOX6 PE=2 SV=1 | 114 | 184 | 5.0E-07 |
| sp|P35710|SOX5_MOUSE | Transcription factor SOX-5 OS=Mus musculus GN=Sox5 PE=1 SV=2 | 109 | 184 | 6.0E-07 |
| sp|P40645|SOX6_MOUSE | Transcription factor SOX-6 OS=Mus musculus GN=Sox6 PE=1 SV=2 | 114 | 184 | 6.0E-07 |
| sp|P57073|SOX8_HUMAN | Transcription factor SOX-8 OS=Homo sapiens GN=SOX8 PE=2 SV=1 | 114 | 194 | 6.0E-07 |
| sp|Q24533|DICH_DROME | SOX domain-containing protein dichaete OS=Drosophila melanogaster GN=D PE=2 SV=1 | 107 | 188 | 7.0E-07 |
| sp|Q62563|SRY_MUSSP | Sex-determining region Y protein OS=Mus spretus GN=Sry PE=3 SV=2 | 113 | 184 | 9.0E-07 |
| sp|P36394|SRY_RAT | Sex-determining region Y protein (Fragment) OS=Rattus norvegicus GN=Sry PE=1 SV=2 | 113 | 184 | 9.0E-07 |
| sp|Q8IMA8|PANG2_DROME | Protein pangolin, isoform J OS=Drosophila melanogaster GN=pan PE=1 SV=2 | 100 | 182 | 9.0E-07 |
| sp|P57074|SOX8_CHICK | Transcription factor SOX-8 OS=Gallus gallus GN=SOX8 PE=2 SV=1 | 114 | 194 | 1.0E-06 |
| sp|Q23045|EGL13_CAEEL | Transcription factor egl-13 OS=Caenorhabditis elegans GN=egl-13 PE=1 SV=2 | 83 | 184 | 1.0E-06 |
| sp|P91943|PANG1_DROME | Protein pangolin, isoforms A/H/I/S OS=Drosophila melanogaster GN=pan PE=1 SV=1 | 100 | 182 | 1.0E-06 |
| sp|P25042|ROX1_YEAST | Repressor ROX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROX1 PE=1 SV=1 | 112 | 184 | 1.0E-06 |
| sp|P40647|SOX5_XENLA | Transcription factor Sox-5 OS=Xenopus laevis GN=sox5 PE=2 SV=2 | 109 | 184 | 1.0E-06 |
| sp|Q62565|SRY_MUSSI | Sex-determining region Y protein OS=Mus spicilegus GN=Sry PE=3 SV=2 | 113 | 184 | 1.0E-06 |
| sp|A5D8R3|S17B3_XENLA | Transcription factor Sox-17-beta.3 OS=Xenopus laevis GN=sox17b.3 PE=2 SV=1 | 102 | 188 | 2.0E-06 |
| sp|Q05738|SRY_MOUSE | Sex-determining region Y protein OS=Mus musculus GN=Sry PE=1 SV=2 | 113 | 184 | 2.0E-06 |
| sp|P40646|SOX7_MOUSE | Transcription factor SOX-7 OS=Mus musculus GN=Sox7 PE=1 SV=2 | 90 | 188 | 2.0E-06 |
| sp|Q863D9|SRY_ALCAC | Sex-determining region Y protein OS=Alces alces cameloides GN=SRY PE=3 SV=1 | 114 | 193 | 2.0E-06 |
| sp|Q04886|SOX8_MOUSE | Transcription factor SOX-8 OS=Mus musculus GN=Sox8 PE=2 SV=2 | 109 | 188 | 3.0E-06 |
| sp|O15370|SOX12_HUMAN | Transcription factor SOX-12 OS=Homo sapiens GN=SOX12 PE=2 SV=2 | 112 | 190 | 4.0E-06 |
| sp|Q90ZH9|S17AB_XENLA | Transcription factor Sox-17-alpha-B OS=Xenopus laevis GN=sox17a-b PE=1 SV=1 | 90 | 188 | 4.0E-06 |
| sp|Q04890|SOX12_MOUSE | Transcription factor SOX-12 OS=Mus musculus GN=Sox12 PE=2 SV=2 | 112 | 190 | 4.0E-06 |
| sp|Q8AWH3|SX17A_XENTR | Transcription factor Sox-17-alpha OS=Xenopus tropicalis GN=sox17a PE=2 SV=1 | 93 | 188 | 4.0E-06 |
| sp|Q9BT81|SOX7_HUMAN | Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1 | 110 | 188 | 4.0E-06 |
| sp|Q9W757|SOX10_CHICK | Transcription factor SOX-10 OS=Gallus gallus GN=SOX10 PE=2 SV=2 | 114 | 194 | 5.0E-06 |
| sp|Q8AWH2|S17B1_XENTR | Transcription factor Sox-17-beta.1 OS=Xenopus tropicalis GN=sox17b.1 PE=2 SV=1 | 109 | 188 | 5.0E-06 |
| sp|Q6F2F0|S17B3_XENTR | Transcription factor Sox-17-beta.3 OS=Xenopus tropicalis GN=sox17b.3 PE=3 SV=2 | 109 | 184 | 5.0E-06 |
| sp|A5A763|SOX10_PIG | Transcription factor SOX-10 OS=Sus scrofa GN=SOX10 PE=2 SV=1 | 114 | 194 | 5.0E-06 |
| sp|O55170|SOX10_RAT | Transcription factor SOX-10 OS=Rattus norvegicus GN=Sox10 PE=1 SV=1 | 114 | 194 | 5.0E-06 |
| sp|P56693|SOX10_HUMAN | Transcription factor SOX-10 OS=Homo sapiens GN=SOX10 PE=1 SV=1 | 114 | 194 | 5.0E-06 |
| sp|Q6IZ48|SOX8_TETNG | Transcription factor Sox-8 OS=Tetraodon nigroviridis GN=sox8 PE=2 SV=2 | 114 | 188 | 5.0E-06 |
| sp|Q04888|SOX10_MOUSE | Transcription factor SOX-10 OS=Mus musculus GN=Sox10 PE=2 SV=2 | 114 | 194 | 5.0E-06 |
| sp|Q06831|SOX4_MOUSE | Transcription factor SOX-4 OS=Mus musculus GN=Sox4 PE=1 SV=2 | 101 | 188 | 7.0E-06 |
| sp|Q6GLH8|S17B2_XENTR | Transcription factor Sox-17-beta.2 OS=Xenopus tropicalis GN=sox17b.2 PE=2 SV=2 | 109 | 188 | 8.0E-06 |
| sp|Q2PG84|SOX1_XENLA | Transcription factor Sox-1 OS=Xenopus laevis GN=sox1 PE=2 SV=1 | 86 | 188 | 8.0E-06 |
| sp|Q6DGL6|SOX1A_DANRE | Transcription factor Sox-1a OS=Danio rerio GN=sox1a PE=2 SV=2 | 86 | 184 | 8.0E-06 |
| sp|A4IIJ8|SOX10_XENTR | Transcription factor Sox-10 OS=Xenopus tropicalis GN=sox10 PE=2 SV=1 | 114 | 188 | 9.0E-06 |
| sp|Q3KQ35|S17AA_XENLA | Transcription factor Sox-17-alpha-A OS=Xenopus laevis GN=sox17a-a PE=1 SV=1 | 78 | 188 | 9.0E-06 |
| sp|P48434|SOX9_CHICK | Transcription factor SOX-9 OS=Gallus gallus GN=SOX9 PE=1 SV=3 | 114 | 188 | 1.0E-05 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3662 | 0.8369 | 0.0421 | 0.0206 | 0.2513 | 0.0044 | 0.0483 | 0.0532 | 0.1713 | 0.0202 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| HMG |
| Orthofinder run ID | 4 |
| Orthogroup | 1950 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2094 MRPRQERVPENGAADTLMTFVTSETQGTVHVFVPDIFDRSVVEGIAQNFSRRVQQPVKVFHDEWRQKYRLCPLPS GVKADILTYGTFYYECDLSEPKPAASPSKDETSGGKTAHIPRPRNSWILYRQYKAAQIQQQYPGITASELSTMIS RSWKAASKEQKKFWQQKAREEDRLHKEKYPDYKYTTKKSTAKKA* |
| Coding | >Hirsu2|2094 ATGCGGCCCCGACAGGAAAGAGTCCCTGAAAATGGAGCCGCCGACACTTTGATGACTTTCGTCACAAGCGAGACT CAAGGCACTGTCCATGTTTTCGTGCCTGATATCTTCGATCGAAGCGTCGTTGAAGGAATCGCTCAAAATTTCAGC CGCCGAGTCCAGCAGCCGGTGAAGGTTTTTCACGACGAGTGGCGACAGAAGTATCGCCTTTGTCCGCTCCCCTCT GGAGTAAAGGCCGACATTCTTACTTATGGCACCTTCTACTATGAGTGTGACTTGTCGGAGCCCAAGCCGGCTGCA AGTCCTTCCAAGGATGAGACTTCTGGTGGTAAAACGGCTCACATTCCGCGCCCGCGCAACAGCTGGATCCTGTAT CGTCAATATAAGGCTGCTCAGATTCAGCAGCAGTATCCAGGAATCACTGCTTCTGAACTGTCTACTATGATTTCG CGCTCGTGGAAAGCCGCGTCCAAGGAACAAAAGAAGTTCTGGCAGCAGAAAGCCCGCGAAGAGGACCGTCTGCAC AAGGAGAAGTATCCTGACTACAAATACACGACAAAGAAGTCGACTGCGAAGAAAGCCTGA |
| Transcript | >Hirsu2|2094 ATGCGGCCCCGACAGGAAAGAGTCCCTGAAAATGGAGCCGCCGACACTTTGATGACTTTCGTCACAAGCGAGACT CAAGGCACTGTCCATGTTTTCGTGCCTGATATCTTCGATCGAAGCGTCGTTGAAGGAATCGCTCAAAATTTCAGC CGCCGAGTCCAGCAGCCGGTGAAGGTTTTTCACGACGAGTGGCGACAGAAGTATCGCCTTTGTCCGCTCCCCTCT GGAGTAAAGGCCGACATTCTTACTTATGGCACCTTCTACTATGAGTGTGACTTGTCGGAGCCCAAGCCGGCTGCA AGTCCTTCCAAGGATGAGACTTCTGGTGGTAAAACGGCTCACATTCCGCGCCCGCGCAACAGCTGGATCCTGTAT CGTCAATATAAGGCTGCTCAGATTCAGCAGCAGTATCCAGGAATCACTGCTTCTGAACTGTCTACTATGATTTCG CGCTCGTGGAAAGCCGCGTCCAAGGAACAAAAGAAGTTCTGGCAGCAGAAAGCCCGCGAAGAGGACCGTCTGCAC AAGGAGAAGTATCCTGACTACAAATACACGACAAAGAAGTCGACTGCGAAGAAAGCCTGA |
| Gene | >Hirsu2|2094 ATGCGGCCCCGACAGGAAAGAGTCCCTGAAAATGGAGCCGCCGACACTTTGATGACTTTCGTCACAAGCGAGACT CAAGGCACTGTCCATGTTTTCGTGCCTGATATCTTCGATCGAAGCGTCGTTGAAGGAATCGCTCAAAATTTCAGG TACGTCAGCTTGAAAGACCTCCCATGAATCATTTCGATGAGATTAATGGTTTTAGCCGCCGAGTCCAGCAGCCGG TGAAGGTTTTTCACGACGAGTGGCGACAGAAGTATCGCCTTTGTCCGCTCCCCTCTGGAGTAAAGGCCGACATTC TTACTTATGGCACCTTCTACTATGAGTGTGGTGAGTTATCTGTGATTGCAAGAAACATATGGTAATAAGCTCACT CAATTTAGACTTGTCGGAGCCCAAGCCGGCTGCAAGTCCTTCCAAGGATGAGACTTCTGGTGGTAAAACGGCTCA CATTCCGCGCCCGCGCAACAGCTGGATCCTGTATCGTCAATATAAGGCTGCTCAGATTCAGCAGCAGTATCCAGG AATCACTGCTTCTGAACTGTGTAAGACTAGGCACTCATCTTCTTGAGAAAACATACTTACCGTCCTCAGCTACTA TGATTTCGCGCTCGTGGAAAGCCGCGTCCAAGGAACAAAAGAAGTTCTGGCAGCAGAAAGCCCGCGAAGAGGACC GTCTGCACAAGGAGAAGTATCCTGACTACAAATACACGACAAAGAAGTCGACTGCGAAGAAAGCCTGA |