Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2092
Gene name
LocationContig_149:4053..5104
Strand+
Gene length (bp)1051
Transcript length (bp)615
Coding sequence length (bp)615
Protein length (aa) 205

Overview

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 3 176 1.0E-42
sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 3 183 4.0E-24
sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 3 188 3.0E-20
sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 3 188 8.0E-19
sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1 3 172 2.0E-16
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 3 176 1.0E-42
sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 3 183 4.0E-24
sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 3 188 3.0E-20
sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 3 188 8.0E-19
sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1 3 172 2.0E-16
sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 3 188 5.0E-16
sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1 PE=1 SV=2 3 158 2.0E-07
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear export signal 0.4874 0.6737 0.141 0.1107 0.2132 0.0119 0.174 0.3696 0.2595 0.0473

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1949
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7284
Ophiocordyceps australis map64 (Brazil) OphauB2|5068
Ophiocordyceps camponoti-floridani Ophcf2|06137
Ophiocordyceps camponoti-rufipedis Ophun1|4255
Ophiocordyceps kimflemingae Ophio5|3763
Ophiocordyceps subramaniannii Hirsu2|2092 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2092
MGFRITSWNVNGIRNPFGYQPWREKRTFQAMFDILEADIVVMQETKIQRKDLQDDMVLVPGWDVYFSLPRHKKGY
SGVAIYTRNATCAPIRAEEGVTGILCPPRSSTKFRDLPSDQQIGGYPRPGQLSGNVEELELDSEGRCVILEFPAF
VLLGVYSPANRNEARDDFRLGFLEALDFLVREMTVAKSLSYGTYVDASILIEKG*
Coding >Hirsu2|2092
ATGGGGTTTCGAATAACATCTTGGAACGTGAACGGCATCAGAAATCCTTTTGGGTATCAGCCATGGAGGGAGAAG
AGGACTTTCCAGGCCATGTTCGACATTTTAGAGGCGGACATCGTGGTTATGCAGGAAACAAAGATCCAGCGCAAG
GACCTCCAGGATGACATGGTTCTTGTGCCCGGTTGGGACGTCTACTTCAGCTTGCCCAGGCACAAGAAAGGATAT
TCCGGCGTGGCGATATACACCCGTAACGCCACTTGCGCACCGATTCGTGCTGAGGAAGGGGTGACGGGGATCCTC
TGTCCACCGAGGTCGTCGACCAAGTTTCGCGATCTTCCTTCGGACCAGCAGATTGGGGGTTATCCACGGCCGGGT
CAGTTGTCGGGCAATGTCGAAGAGTTAGAGCTGGATTCCGAGGGGCGCTGCGTCATCCTCGAGTTCCCCGCCTTC
GTCCTCCTGGGGGTTTACAGCCCGGCCAACCGAAACGAAGCTCGTGACGACTTCCGTCTCGGCTTTCTCGAAGCT
CTCGACTTCTTGGTCCGCGAGATGACGGTCGCCAAAAGCCTGTCTTATGGGACCTATGTCGATGCTTCCATCCTG
ATCGAGAAGGGATGA
Transcript >Hirsu2|2092
ATGGGGTTTCGAATAACATCTTGGAACGTGAACGGCATCAGAAATCCTTTTGGGTATCAGCCATGGAGGGAGAAG
AGGACTTTCCAGGCCATGTTCGACATTTTAGAGGCGGACATCGTGGTTATGCAGGAAACAAAGATCCAGCGCAAG
GACCTCCAGGATGACATGGTTCTTGTGCCCGGTTGGGACGTCTACTTCAGCTTGCCCAGGCACAAGAAAGGATAT
TCCGGCGTGGCGATATACACCCGTAACGCCACTTGCGCACCGATTCGTGCTGAGGAAGGGGTGACGGGGATCCTC
TGTCCACCGAGGTCGTCGACCAAGTTTCGCGATCTTCCTTCGGACCAGCAGATTGGGGGTTATCCACGGCCGGGT
CAGTTGTCGGGCAATGTCGAAGAGTTAGAGCTGGATTCCGAGGGGCGCTGCGTCATCCTCGAGTTCCCCGCCTTC
GTCCTCCTGGGGGTTTACAGCCCGGCCAACCGAAACGAAGCTCGTGACGACTTCCGTCTCGGCTTTCTCGAAGCT
CTCGACTTCTTGGTCCGCGAGATGACGGTCGCCAAAAGCCTGTCTTATGGGACCTATGTCGATGCTTCCATCCTG
ATCGAGAAGGGATGA
Gene >Hirsu2|2092
ATGGGGTTTCGAATAACATCTTGGAACGGTAAAGGGGTTTGCATCTCCCCGTCTACCTAGCCACCGCTGACCAAG
CACCAGTGAACGGCATCAGGTAGAGACCGGTGACTCCTGGCACTCTGAGCGTTGACCGTCGAGGTCGCCATCTGA
CTTGTTCACCTAGAAATCCTTTTGGGTATCAGCCATGGAGGGAGAAGAGGACTTTCCAGGCGAGATGGCGAAACT
TCCAGGGCGAAAGGGATGCAGTGGCTGACATCGCTGGTCGTCCCGCAGGCCATGTTCGACATTTTAGAGGCGGAC
ATCGTGGTTATGCAGGAAACAAAGATCCAGCGCAAGGACCTCCAGGATGACATGGTTCTTGTGCCCGGTTGGGAC
GTCTACTTCAGCTTGCCCAGGCACAAGAAAGGTATGCCCCGACTTCTTCGTCTTGCTCGCAAGAACGCCCACGGC
CAACTCGCGTTTGCCTCAGGATATTCCGGCGTGGCGATATACACCCGTAACGCCACTTGCGCACCGATTCGTGCT
GAGGAAGGGGTGACGGGGATCCTCTGTCCACCGAGGTCGTCGACCAAGTTTCGCGATCTTCCTTCGGACCAGCAG
ATTGGGGGTTATCCACGGCCGGGTCAGTTGTCGGGCAATGTCGAAGAGTTAGAGCTGGATTCCGAGGGGCGCTGC
GTCATCCTCGAGTTCCCCGCCTTCGTCCTCCTGGGGGTTTACAGCCCGGCCAACCGAAACGAAGCTCGTGACGAC
TTCCGTCTCGGCTTTCTCGAAGCTCTCGACGTGAGAGTGCGCAATCTGGTCGCCTCTGGCAAACAAGTCGTCTTG
ACCGGAGATCTGAATGTCATTCGCTCGGAGAAAGACACGACAAACCTGGTGGAAGCCCTTCGGAAGGAAGGGATG
AGCTTGGACGACTGGCTGTCAATGCCATCGCGACGCATCATGAACCAGCTGCTCTTCGAGGGAGCAGTTCTTGGT
CCGCGAGATGACGGTCGCCAAAAGCCTGTCTTATGGGACCTATGTCGATGCTTCCATCCTGATCGAGAAGGGATG
A

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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