Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2091
Gene name
LocationContig_149:2723..3465
Strand-
Gene length (bp)742
Transcript length (bp)390
Coding sequence length (bp)390
Protein length (aa) 130

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02046 COX6A Cytochrome c oxidase subunit VIa 2.7E-53 20 124

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74471|COX13_SCHPO Cytochrome c oxidase subunit 6A, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox13 PE=3 SV=1 25 126 8.0E-22
sp|P32799|COX13_YEAST Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX13 PE=1 SV=1 34 123 5.0E-18
sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1 46 122 8.0E-12
sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens GN=COX6A1 PE=1 SV=4 48 121 2.0E-10
sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus GN=Cox6a1 PE=1 SV=2 6 121 3.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|O74471|COX13_SCHPO Cytochrome c oxidase subunit 6A, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox13 PE=3 SV=1 25 126 8.0E-22
sp|P32799|COX13_YEAST Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX13 PE=1 SV=1 34 123 5.0E-18
sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1 46 122 8.0E-12
sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens GN=COX6A1 PE=1 SV=4 48 121 2.0E-10
sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus GN=Cox6a1 PE=1 SV=2 6 121 3.0E-10
sp|O13082|COX6A_CYPCA Cytochrome c oxidase subunit 6A, mitochondrial OS=Cyprinus carpio PE=3 SV=1 22 121 4.0E-10
sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus mykiss PE=3 SV=1 45 121 2.0E-09
sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1 48 121 6.0E-09
sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2 48 121 7.0E-09
sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus GN=COX6A1 PE=1 SV=3 48 121 4.0E-08
sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens GN=COX6A2 PE=2 SV=2 53 121 4.0E-07
sp|Q5RC38|CX6A2_PONAB Cytochrome c oxidase subunit 6A2, mitochondrial OS=Pongo abelii GN=COX6A2 PE=3 SV=1 53 121 5.0E-07
sp|P10817|CX6A2_RAT Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment) OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3 44 121 8.0E-07
sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus GN=Cox6a2 PE=1 SV=2 44 121 1.0E-06
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GO

GO Term Description Terminal node
GO:0005743 mitochondrial inner membrane Yes
GO:0005751 mitochondrial respiratory chain complex IV Yes
GO:0045277 respiratory chain complex IV No
GO:0031966 mitochondrial membrane No
GO:0032991 protein-containing complex No
GO:0070069 cytochrome complex No
GO:0098800 inner mitochondrial membrane protein complex No
GO:0098803 respiratory chain complex No
GO:0098798 mitochondrial protein-containing complex No
GO:0005575 cellular_component No
GO:0019866 organelle inner membrane No
GO:0031090 organelle membrane No
GO:0016020 membrane No
GO:0110165 cellular anatomical entity No
GO:0098796 membrane protein complex No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.0923 0.0841 0.0109 0.0974 0.9646 0.0238 0.0598 0.026 0.0543 0.0076

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 56 78 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1948
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7283
Ophiocordyceps australis map64 (Brazil) OphauB2|5069
Ophiocordyceps camponoti-floridani Ophcf2|06138
Ophiocordyceps camponoti-rufipedis Ophun1|4424
Ophiocordyceps kimflemingae Ophio5|3764
Ophiocordyceps subramaniannii Hirsu2|2091 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2091
MFASRQAVRGASRFAAQLRAPAQRRLASSSTENQFIKERQHIKEHAAGTTELWRKISIYGVIPCLALAGANAYYL
WNAHWEHWSHMPPLEERVEYPYQNIRTKNFPWGDGDKTLFWNDSVNYHNKDKTS*
Coding >Hirsu2|2091
ATGTTCGCCTCACGACAAGCCGTCCGTGGCGCCTCGCGCTTCGCCGCGCAGCTTCGCGCACCCGCCCAGCGACGT
CTGGCCAGCTCGTCGACCGAGAACCAGTTCATCAAGGAGCGCCAGCACATCAAGGAGCACGCTGCGGGGACAACT
GAGCTGTGGAGGAAGATCTCCATCTACGGTGTGATTCCCTGCCTCGCCCTCGCCGGTGCCAACGCCTACTACCTG
TGGAACGCCCACTGGGAGCACTGGTCGCATATGCCCCCGCTGGAGGAGCGCGTTGAGTACCCATACCAGAACATT
CGCACCAAGAACTTTCCGTGGGGCGATGGCGACAAGACGCTCTTCTGGAACGACAGTGTCAACTACCACAACAAG
GACAAGACTTCGTAA
Transcript >Hirsu2|2091
ATGTTCGCCTCACGACAAGCCGTCCGTGGCGCCTCGCGCTTCGCCGCGCAGCTTCGCGCACCCGCCCAGCGACGT
CTGGCCAGCTCGTCGACCGAGAACCAGTTCATCAAGGAGCGCCAGCACATCAAGGAGCACGCTGCGGGGACAACT
GAGCTGTGGAGGAAGATCTCCATCTACGGTGTGATTCCCTGCCTCGCCCTCGCCGGTGCCAACGCCTACTACCTG
TGGAACGCCCACTGGGAGCACTGGTCGCATATGCCCCCGCTGGAGGAGCGCGTTGAGTACCCATACCAGAACATT
CGCACCAAGAACTTTCCGTGGGGCGATGGCGACAAGACGCTCTTCTGGAACGACAGTGTCAACTACCACAACAAG
GACAAGACTTCGTAA
Gene >Hirsu2|2091
ATGTTCGCCTCACGACAAGCCGTCCGTGGCGCCTCGCGCTTCGCCGCGCAGCTTCGCGCACCCGCCCAGCGACGT
CTGGCCAGCTCGTCGACCGAGAACCAGTTCATCAAGGAGCGCCAGCACATCAAGGAGCACGCTGCGGGGACAACT
GGTGAGTCAGCGGCGCCTGGCAGCTTGCTTGGGTGGTCGGACGAGAGACGTATACTGACGATTGACTTTGCAGAG
CTGTGGAGGAAGATCTCCATCTAGTACGTCACACGCTCCCGCCTTCGCGATCGCTCCCCTCCGTCGAGAGCATCC
CATTCCGACTGCTAGGGCATCGCGCCAGGCGATCCGCTTCAGTGGCAGGAGGGAGGCTGACAGGCGTCGAAGCGG
TGTGATTCCCTGCCTCGCCCTCGCCGGTGCCAACGCCTACTACCTGTGGAACGCCCACTGGGAGCACTGGTCGCA
TATGCCCCCGCTGGAGGAGCGCGTTGAGTACCCATACCAGAACATTCGCACCAAGAACTTTCCGTGGGGCGATGG
CGACAAGGTGAGTTTCTCGATCTCATTTACCGAGAAGTGGTGACGGTCGATGGCTGACGGAGTGATAGACGCTCT
TGTAAGTGCCGGCTGATACGGGCTGGGGATTAAGCCGTGACGCGATCAAATTCGAACGGCGGAGTAGAAGATTCG
AATGCTAACGCGCGGAAACAGCTGGAACGACAGTGTCAACTACCACAACAAGGACAAGACTTCGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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