Protein ID | Hirsu2|2078 |
Gene name | |
Location | Contig_1486:1..1383 |
Strand | - |
Gene length (bp) | 1382 |
Transcript length (bp) | 1143 |
Coding sequence length (bp) | 1143 |
Protein length (aa) | 381 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.158 | 0.16 | 0.0796 | 0.6474 | 0.0595 | 0.0023 | 0.0931 | 0.5647 | 0.2082 | 0.008 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 153 | 175 | 22 |
2 | 206 | 228 | 22 |
3 | 241 | 263 | 22 |
4 | 304 | 326 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1940 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2078 MAAQGPDDKKRPAALNLTPARSISDSSTSTDSLKVPRTPRFAEATSVHSPVDMRSPFADPDQSQVAQSQPGDIGF GYIGSTNQLNRESVAVPATPRSPLKSALKVPGTPARQFSNPLSPTFREEDLLEKRESSTEKEQVRDVKMKTRVRM AKFALRGVSFSCSLIILSMLSASFAIFNATKSLPSQSGMPSWAPNTASKSWPQKLALAMACLSLFVCICVFLAYC RGGHKRAEKVNTYYQTFAVGWFITSLILWVVTAAIFQHARDHSNNKDMWGWACVDNTRSDVFMQKVDYQLVCRLQ NWSLVCIIIEIVIEVISIALYSIVFWRYYTKRRLFKSMDLRDRARSDLYLAQLRSQSAPNTPGYAGPKSPALSHY AIPAP* |
Coding | >Hirsu2|2078 ATGGCCGCCCAAGGCCCGGATGACAAGAAGCGGCCGGCTGCCCTCAATTTGACTCCGGCCCGGTCCATCTCGGAT TCGTCCACGTCCACCGACTCCCTCAAGGTTCCTCGTACGCCTCGCTTCGCCGAGGCCACCTCTGTCCATTCTCCC GTCGACATGAGGTCTCCATTTGCAGACCCCGACCAGTCTCAGGTTGCCCAGTCGCAGCCGGGTGACATCGGCTTT GGCTACATCGGAAGCACCAACCAGCTCAACCGTGAATCCGTCGCCGTCCCAGCCACCCCCCGCTCGCCTCTCAAG AGCGCCTTGAAGGTGCCTGGGACCCCGGCAAGACAGTTTTCGAATCCCCTCAGCCCGACCTTCCGTGAGGAGGAT CTTCTGGAAAAGCGGGAGAGTTCTACGGAGAAGGAGCAAGTACGCGATGTTAAAATGAAGACGCGCGTGCGCATG GCCAAGTTTGCTCTTCGCGGCGTCAGCTTCAGCTGCTCCCTCATCATCCTCTCCATGCTTTCCGCCTCCTTCGCC ATCTTCAACGCCACCAAGAGCCTGCCCAGCCAGAGCGGCATGCCGTCCTGGGCCCCCAACACCGCCTCCAAGTCC TGGCCCCAGAAGCTTGCCCTGGCCATGGCCTGCCTCTCCCTCTTCGTCTGCATCTGCGTCTTCCTCGCCTACTGC CGCGGCGGGCACAAGCGGGCAGAAAAGGTCAACACCTACTACCAGACCTTTGCCGTCGGCTGGTTCATCACGAGC CTCATCCTCTGGGTCGTCACCGCCGCCATCTTCCAGCATGCGCGCGACCACAGCAACAACAAGGACATGTGGGGC TGGGCCTGCGTCGACAACACCCGGTCCGACGTCTTCATGCAAAAGGTCGACTACCAGCTCGTCTGCCGCCTGCAG AACTGGTCGCTCGTGTGCATCATCATCGAGATCGTCATCGAGGTCATCTCCATCGCCCTCTACAGCATCGTCTTC TGGCGCTACTACACCAAGCGCCGCCTCTTCAAGTCGATGGACCTGCGCGACCGCGCCCGCTCCGACCTCTACCTC GCCCAGCTGCGCTCCCAGTCGGCCCCCAACACCCCCGGCTACGCCGGCCCCAAGTCCCCGGCCCTGAGCCACTAC GCCATTCCAGCCCCCTGA |
Transcript | >Hirsu2|2078 ATGGCCGCCCAAGGCCCGGATGACAAGAAGCGGCCGGCTGCCCTCAATTTGACTCCGGCCCGGTCCATCTCGGAT TCGTCCACGTCCACCGACTCCCTCAAGGTTCCTCGTACGCCTCGCTTCGCCGAGGCCACCTCTGTCCATTCTCCC GTCGACATGAGGTCTCCATTTGCAGACCCCGACCAGTCTCAGGTTGCCCAGTCGCAGCCGGGTGACATCGGCTTT GGCTACATCGGAAGCACCAACCAGCTCAACCGTGAATCCGTCGCCGTCCCAGCCACCCCCCGCTCGCCTCTCAAG AGCGCCTTGAAGGTGCCTGGGACCCCGGCAAGACAGTTTTCGAATCCCCTCAGCCCGACCTTCCGTGAGGAGGAT CTTCTGGAAAAGCGGGAGAGTTCTACGGAGAAGGAGCAAGTACGCGATGTTAAAATGAAGACGCGCGTGCGCATG GCCAAGTTTGCTCTTCGCGGCGTCAGCTTCAGCTGCTCCCTCATCATCCTCTCCATGCTTTCCGCCTCCTTCGCC ATCTTCAACGCCACCAAGAGCCTGCCCAGCCAGAGCGGCATGCCGTCCTGGGCCCCCAACACCGCCTCCAAGTCC TGGCCCCAGAAGCTTGCCCTGGCCATGGCCTGCCTCTCCCTCTTCGTCTGCATCTGCGTCTTCCTCGCCTACTGC CGCGGCGGGCACAAGCGGGCAGAAAAGGTCAACACCTACTACCAGACCTTTGCCGTCGGCTGGTTCATCACGAGC CTCATCCTCTGGGTCGTCACCGCCGCCATCTTCCAGCATGCGCGCGACCACAGCAACAACAAGGACATGTGGGGC TGGGCCTGCGTCGACAACACCCGGTCCGACGTCTTCATGCAAAAGGTCGACTACCAGCTCGTCTGCCGCCTGCAG AACTGGTCGCTCGTGTGCATCATCATCGAGATCGTCATCGAGGTCATCTCCATCGCCCTCTACAGCATCGTCTTC TGGCGCTACTACACCAAGCGCCGCCTCTTCAAGTCGATGGACCTGCGCGACCGCGCCCGCTCCGACCTCTACCTC GCCCAGCTGCGCTCCCAGTCGGCCCCCAACACCCCCGGCTACGCCGGCCCCAAGTCCCCGGCCCTGAGCCACTAC GCCATTCCAGCCCCCTGA |
Gene | >Hirsu2|2078 ATGGCCGCCCAAGGTCCGTCTCTATCTGGCCTCTCCCTTACTCACCTTGACTGGTCGTCCTAACTCGCCCCCCAA TAGGCCCGGATGACAAGAAGCGGCCGGCTGCCCTCAATTTGACTCCGGCCCGGTCCATCTCGGATTCGTCCACGT CCACCGACTCCCTCAAGGTTCCTCGTACGCCTCGCTTCGCCGAGGCCACCTCTGTCCATTCTCCCGTCGACATGA GGTCTCCATTTGCAGACCCCGACCAGTCTCAGGTTGCCCAGTCGCAGCCGGGTGACATCGGCTTTGGCTACATCG GAAGCACCAACCAGCTCAACCGTGAATCCGTCGCCGTCCCAGCCACCCCCCGCTCGCCTCTCAAGAGCGCCTTGA AGGTGCCTGGGACCCCGGCAAGACAGTTTTCGAATCCCCTCAGCCCGACCTTCCGTGAGGAGGATCTTCTGGAAA AGCGGGAGAGTTCTACGGAGAAGGAGCAAGTACGCGATGTTGTAAGTCAAAGCCCATTGCTGCGCGCCAACCGGT CGTCGCCTAACCCGCTCTCCAGAAAATGAAGACGCGCGTGCGCATGGCCAAGTTTGCTCTTCGCGGCGTCAGCTT CAGCTGCTCCCTCATCATCCTCTCCATGCTTTCCGCCTCCTTCGCCATCTTCAACGCCACCAAGAGCCTGCCCAG CCAGAGCGGCATGCCGTCCTGGGCCCCCAACACCGCCTCCAAGTCCTGGCCCCAGAAGCTTGCCCTGGCCATGGC CTGCCTCTCCCTCTTCGTCTGCATCTGCGTCTTCCTCGCCTACTGCCGCGGCGGGCACAAGCGGGCAGAAAAGGT CAACACCTACTACCAGACCTTTGCCGTCGGCTGGGTGAGTCGCCGCCCGCCCGTCCCTCGTCGCCAATTGGCGGA CCCTCTTACTGACCAGCGACGCCAGTTCATCACGAGCCTCATCCTCTGGGTCGTCACCGCCGCCATCTTCCAGCA TGCGCGCGACCACAGCAACAACAAGGACATGTGGGGCTGGGCCTGCGTCGACAACACCCGGTCCGACGTCTTCAT GCAAAAGGTCGACTACCAGCTCGTCTGCCGCCTGCAGAACTGGTCGCTCGTGTGCATCATCATCGAGATCGTCAT CGAGGTCATCTCCATCGCCCTCTACAGCATCGTCTTCTGGCGCTACTACACCAAGCGCCGCCTCTTCAAGTCGAT GGACCTGCGCGACCGCGCCCGCTCCGACCTCTACCTCGCCCAGCTGCGCTCCCAGTCGGCCCCCAACACCCCCGG CTACGCCGGCCCCAAGTCCCCGGCCCTGAGCCACTACGCCATGTCTCCCCGCCACCCCCCGGCCGCCTACCGCAA CCTGTCCGACATCGCCGAGTCCAGCCCCCTGA |