© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2075 |
| Gene name | |
| Location | Contig_1485:564..1707 |
| Strand | - |
| Gene length (bp) | 1143 |
| Transcript length (bp) | 870 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03127 | GAT | GAT domain | 1.2E-08 | 236 | 279 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035091 | phosphatidylinositol binding | Yes |
| GO:0043130 | ubiquitin binding | Yes |
| GO:0005543 | phospholipid binding | No |
| GO:0005515 | protein binding | No |
| GO:0032182 | ubiquitin-like protein binding | No |
| GO:0005488 | binding | No |
| GO:0008289 | lipid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5106 | 0.259 | 0.3143 | 0.2075 | 0.2804 | 0.0873 | 0.1712 | 0.306 | 0.5455 | 0.0668 |
| Orthofinder run ID | 4 |
| Orthogroup | 1938 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2075 MKGLSMNKMLGSIKRKTGAGAGAGPASPEASSASAATPADNPEVTAHNSVKAFCESGGSAQNDEVLFLPPIVDAA ESSPAAAAECARGIRKYLSKDYFSRPSWQYNALMLVRILTDNPGETFTRNIDDKFVDTARHLLKNSKDPSVRQLL METLDDFERTKLHDENLAPLILMWNKEKEKAFKDTGARAPPIGPRPSAGSPGPQSNGNAQNYFAKSHSNNRLPNA VELASRLEEARTSAKLLEQVVMNTPPAEMLQNDLIREFANRCLSASRSIQGYMVRPSTSTSGPC* |
| Coding | >Hirsu2|2075 ATGAAGGGCCTCAGCATGAACAAGATGCTGGGAAGCATCAAGAGGAAGACCGGTGCCGGTGCCGGTGCCGGCCCT GCCAGCCCCGAGGCCAGCTCGGCATCGGCCGCGACGCCGGCAGACAACCCCGAGGTCACTGCCCATAACAGCGTG AAAGCGTTTTGCGAGTCCGGCGGCAGCGCCCAGAACGACGAAGTGCTCTTCCTCCCCCCCATCGTCGACGCCGCC GAGTCGTCGCCGGCCGCGGCCGCCGAGTGCGCGCGCGGCATCCGCAAGTACCTGAGCAAGGACTACTTCTCGCGG CCGTCGTGGCAATACAACGCCCTCATGCTCGTCCGCATCCTGACCGACAACCCGGGCGAGACGTTTACGAGGAAC ATCGACGACAAGTTTGTCGACACGGCCCGGCACCTGCTCAAGAACTCCAAGGACCCCAGCGTGCGCCAGCTGCTG ATGGAGACGCTCGACGACTTTGAGCGCACCAAGCTGCACGACGAGAACCTGGCGCCGCTGATCCTCATGTGGAAC AAGGAGAAGGAGAAGGCCTTCAAGGACACGGGGGCTCGCGCGCCGCCGATCGGACCTCGGCCGTCGGCGGGGAGC CCCGGGCCCCAGTCCAACGGCAACGCGCAAAACTACTTTGCCAAGTCGCACTCCAACAACCGGCTGCCCAACGCG GTCGAGCTGGCGAGCCGGCTCGAGGAGGCGCGGACCTCGGCCAAGCTGCTGGAGCAGGTCGTCATGAATACGCCG CCGGCCGAGATGCTGCAAAACGACCTGATCCGCGAGTTTGCGAACCGCTGCCTGAGCGCGTCGCGGAGCATACAG GGCTACATGGTACGGCCCTCAACCAGCACCAGCGGGCCATGCTGA |
| Transcript | >Hirsu2|2075 ATGAAGGGCCTCAGCATGAACAAGATGCTGGGAAGCATCAAGAGGAAGACCGGTGCCGGTGCCGGTGCCGGCCCT GCCAGCCCCGAGGCCAGCTCGGCATCGGCCGCGACGCCGGCAGACAACCCCGAGGTCACTGCCCATAACAGCGTG AAAGCGTTTTGCGAGTCCGGCGGCAGCGCCCAGAACGACGAAGTGCTCTTCCTCCCCCCCATCGTCGACGCCGCC GAGTCGTCGCCGGCCGCGGCCGCCGAGTGCGCGCGCGGCATCCGCAAGTACCTGAGCAAGGACTACTTCTCGCGG CCGTCGTGGCAATACAACGCCCTCATGCTCGTCCGCATCCTGACCGACAACCCGGGCGAGACGTTTACGAGGAAC ATCGACGACAAGTTTGTCGACACGGCCCGGCACCTGCTCAAGAACTCCAAGGACCCCAGCGTGCGCCAGCTGCTG ATGGAGACGCTCGACGACTTTGAGCGCACCAAGCTGCACGACGAGAACCTGGCGCCGCTGATCCTCATGTGGAAC AAGGAGAAGGAGAAGGCCTTCAAGGACACGGGGGCTCGCGCGCCGCCGATCGGACCTCGGCCGTCGGCGGGGAGC CCCGGGCCCCAGTCCAACGGCAACGCGCAAAACTACTTTGCCAAGTCGCACTCCAACAACCGGCTGCCCAACGCG GTCGAGCTGGCGAGCCGGCTCGAGGAGGCGCGGACCTCGGCCAAGCTGCTGGAGCAGGTCGTCATGAATACGCCG CCGGCCGAGATGCTGCAAAACGACCTGATCCGCGAGTTTGCGAACCGCTGCCTGAGCGCGTCGCGGAGCATACAG GGCTACATGGTACGGCCCTCAACCAGCACCAGCGGGCCATGCTGA |
| Gene | >Hirsu2|2075 ATGAAGGGCCTCAGCATGAACAAGATGCTGGGAAGCATCAAGAGGAAGACCGGTGCCGGTGCCGGTGCCGGCCCT GGTGCGCCGCCCTTCTCCCTCCCACGCCGCCACCGCTGCGGCTGACCATCGTTTGCAGCCAGCCCCGAGGCCAGC TCGGCATCGGCCGCGACGCCGGCAGACAACCCCGAGGTCACTGCCCATAACAGCGTGGTACGTGCGACTGGTGCG ACGCCTGCGCCGCCGCCGCCCTGCTGACCCAGCGCAGAAAGCGTTTTGCGAGTCCGGCGGCAGCGCCCAGAACGA CGAAGTGCTCTTCCTCCCCCCCATCGTCGACGCCGCCGAGTCGTCGCCGGCCGCGGCCGCCGAGTGCGCGCGCGG CATCCGCAAGTACCTGAGCAAGGACTACTTCTCGCGGCCGTCGTGGCAATACAACGCCCTCATGCTCGTCCGCAT CCTGACCGACAACCCGGGCGAGACGTTTACGAGGAACATCGACGACAAGTTTGTCGACACGGCCCGGCACCTGCT CAAGAACTCCAAGGACCCCAGCGTGCGCCAGCTGCTGATGGAGACGCTCGACGACTTTGAGCGCACCAAGCTGCA CGACGAGAACCTGGCGCCGCTGATCCTCATGTGGAACAAGGAGAAGGAGAAGGCCTTCAAGGACACGGGGGTTAG AGAGCCTCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNACGCAGGCTCGCGCGCCGCCGATCGGACCTCGGCCGTCGGCGGGGAGCCCCGGGCCCCAGTCCAACG GCAACGCGCAAAACTACTTTGCCAAGTCGCACTCCAACAACCGGCTGCCCAACGCGGTCGAGCTGGCGAGCCGGC TCGAGGAGGCGCGGACCTCGGCCAAGCTGCTGGAGCAGGTCGTCATGAATACGCCGCCGGCCGAGATGCTGCAAA ACGACCTGATCCGCGAGTTTGCGAACCGCTGCCTGAGCGCGTCGCGGAGCATACAGGGCTACATGGTGTCGGAGA GCCCGGCGCCGGACAACGACACGATGGAAAACCTGATCGACACCAACGAGCAGCTGCAGACGGCCCTCAACCAGC ACCAGCGGGCCATGCTGA |