© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2071 |
| Gene name | |
| Location | Contig_1482:4967..5939 |
| Strand | + |
| Gene length (bp) | 972 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06644 | ATP11 | ATP11 protein | 1.0E-94 | 50 | 316 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32453|ATP11_YEAST | Protein ATP11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP11 PE=1 SV=1 | 52 | 322 | 1.0E-52 |
| sp|P87127|ATP11_SCHPO | Protein atp11, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp11 PE=3 SV=1 | 70 | 306 | 9.0E-26 |
| sp|Q5TC12|ATPF1_HUMAN | ATP synthase mitochondrial F1 complex assembly factor 1 OS=Homo sapiens GN=ATPAF1 PE=1 SV=1 | 76 | 275 | 5.0E-10 |
| sp|Q811I0|ATPF1_MOUSE | ATP synthase mitochondrial F1 complex assembly factor 1 OS=Mus musculus GN=Atpaf1 PE=1 SV=1 | 76 | 275 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0065003 | protein-containing complex assembly | Yes |
| GO:0016043 | cellular component organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0009987 | cellular process | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1257 | 0.1378 | 0.0527 | 0.0877 | 0.9604 | 0.0132 | 0.0242 | 0.0267 | 0.0424 | 0.0102 |
| Orthofinder run ID | 4 |
| Orthogroup | 1936 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2071 MSSARMPALRLLAARPLRTVRCSGAHQQRRWARVYDVRFVATTQPGLAAVDKYRAKLEEKARREGHGGIDDLRNA YADRIEAQRRKDAVEFPHAVAPIPQAAETPVAQPNRGPLPSSSPAAGRPAAVRTLDDILDLDKARALPEKELTAI WRLRHARSPRNICAVIPAAVYGAMEAAARRSPQFVLPVPHESRGAEMHFLQWTFDAASRTSTVLFTQLAEYKARG EFAQPHTTITHHLDLVPDKGLVLMQGQLVDGRGILPKHAEWLVLCLQRFYGAWDGDGASLQGERRRRAEERRKLL EWFAAGDPRFSVEKLLEEAERMG* |
| Coding | >Hirsu2|2071 ATGTCTTCGGCTCGGATGCCGGCTTTGCGCCTGCTGGCGGCCCGTCCGCTGCGTACCGTCCGCTGCAGCGGCGCG CACCAGCAGCGGCGCTGGGCCCGCGTCTACGACGTGCGCTTCGTCGCCACGACGCAGCCGGGCCTCGCCGCCGTC GACAAGTACCGCGCCAAGCTCGAGGAGAAGGCCCGGCGCGAGGGCCACGGCGGCATCGACGACCTGCGCAACGCC TACGCCGACCGGATCGAGGCCCAGCGCCGCAAGGACGCCGTCGAGTTCCCCCACGCCGTCGCTCCCATCCCGCAG GCGGCCGAGACGCCGGTGGCGCAGCCGAACCGCGGCCCGCTGCCGTCGTCGTCCCCGGCGGCGGGCAGGCCGGCC GCCGTTCGGACGCTGGACGACATCCTCGACCTCGACAAGGCGCGCGCGCTGCCGGAGAAGGAGCTGACGGCCATC TGGCGGCTGCGGCACGCGCGGTCGCCGCGCAACATCTGCGCCGTCATACCCGCCGCCGTCTACGGCGCCATGGAG GCGGCCGCGCGCCGGTCGCCGCAGTTCGTGCTGCCGGTCCCGCACGAGAGCCGTGGCGCCGAGATGCACTTCCTG CAGTGGACCTTCGACGCCGCCTCCCGCACCAGCACCGTCCTCTTCACCCAGCTGGCCGAGTACAAGGCGCGCGGC GAGTTCGCGCAGCCGCACACCACCATCACCCACCACCTCGACCTCGTGCCCGACAAGGGCCTGGTCCTCATGCAG GGCCAGCTCGTCGACGGCCGGGGCATCCTGCCCAAGCACGCCGAGTGGCTCGTCTTGTGCCTGCAGCGCTTCTAC GGCGCCTGGGACGGCGACGGCGCCTCCCTGCAGGGCGAGAGGAGGCGCAGGGCCGAGGAGAGGAGGAAGCTGCTC GAGTGGTTTGCCGCCGGCGACCCGAGGTTCAGCGTCGAGAAGCTGCTGGAGGAGGCCGAGCGCATGGGATGA |
| Transcript | >Hirsu2|2071 ATGTCTTCGGCTCGGATGCCGGCTTTGCGCCTGCTGGCGGCCCGTCCGCTGCGTACCGTCCGCTGCAGCGGCGCG CACCAGCAGCGGCGCTGGGCCCGCGTCTACGACGTGCGCTTCGTCGCCACGACGCAGCCGGGCCTCGCCGCCGTC GACAAGTACCGCGCCAAGCTCGAGGAGAAGGCCCGGCGCGAGGGCCACGGCGGCATCGACGACCTGCGCAACGCC TACGCCGACCGGATCGAGGCCCAGCGCCGCAAGGACGCCGTCGAGTTCCCCCACGCCGTCGCTCCCATCCCGCAG GCGGCCGAGACGCCGGTGGCGCAGCCGAACCGCGGCCCGCTGCCGTCGTCGTCCCCGGCGGCGGGCAGGCCGGCC GCCGTTCGGACGCTGGACGACATCCTCGACCTCGACAAGGCGCGCGCGCTGCCGGAGAAGGAGCTGACGGCCATC TGGCGGCTGCGGCACGCGCGGTCGCCGCGCAACATCTGCGCCGTCATACCCGCCGCCGTCTACGGCGCCATGGAG GCGGCCGCGCGCCGGTCGCCGCAGTTCGTGCTGCCGGTCCCGCACGAGAGCCGTGGCGCCGAGATGCACTTCCTG CAGTGGACCTTCGACGCCGCCTCCCGCACCAGCACCGTCCTCTTCACCCAGCTGGCCGAGTACAAGGCGCGCGGC GAGTTCGCGCAGCCGCACACCACCATCACCCACCACCTCGACCTCGTGCCCGACAAGGGCCTGGTCCTCATGCAG GGCCAGCTCGTCGACGGCCGGGGCATCCTGCCCAAGCACGCCGAGTGGCTCGTCTTGTGCCTGCAGCGCTTCTAC GGCGCCTGGGACGGCGACGGCGCCTCCCTGCAGGGCGAGAGGAGGCGCAGGGCCGAGGAGAGGAGGAAGCTGCTC GAGTGGTTTGCCGCCGGCGACCCGAGGTTCAGCGTCGAGAAGCTGCTGGAGGAGGCCGAGCGCATGGGATGA |
| Gene | >Hirsu2|2071 ATGTCTTCGGCTCGGATGCCGGCTTTGCGCCTGCTGGCGGCCCGTCCGCTGCGTACCGTCCGCTGCAGCGGCGCG CACCAGCAGCGGCGCTGGGCCCGCGTCTACGACGTGCGCTTCGTCGCCACGACGCAGCCGGGCCTCGCCGCCGTC GACAAGTACCGCGCCAAGCTCGAGGAGAAGGCCCGGCGCGAGGGCCACGGCGGCATCGACGACCTGCGCAACGCC TACGCCGACCGGATCGAGGCCCAGCGCCGCAAGGACGCCGTCGAGTTCCCCCACGCCGTCGCTCCCATCCCGCAG GCGGCCGAGACGCCGGTGGCGCAGCCGAACCGCGGCCCGCTGCCGTCGTCGTCCCCGGCGGCGGGCAGGCCGGCC GCCGTTCGGACGCTGGACGACATCCTCGACCTCGACAAGGCGCGCGCGCTGCCGGAGAAGGAGCTGACGGCCATC TGGCGGCTGCGGCACGCGCGGTCGCCGCGCAACATCTGCGCCGTCATACCCGCCGCCGTCTACGGCGCCATGGAG GCGGCCGCGCGCCGGTCGCCGCAGTTCGTGCTGCCGGTCCCGCACGAGAGCCGTGGCGCCGAGATGCACTTCCTG CAGTGGACCTTCGACGCCGCCTCCCGCACCAGCACCGTCCTCTTCACCCAGCTGGCCGAGTACAAGGCGCGCGGC GAGTTCGCGCAGCCGCACACCACCATCACCCACCACCTCGACCTCGTGCCCGACAAGGGCCTGGTCCTCATGCAG GGCCAGCTCGTCGACGGCCGGGGCATCCTGCCCAAGCACGCCGAGTGGCTCGTCTTGTGCCTGCAGCGCTTCTAC GGCGCCTGGGACGGCGACGGCGCCTCCCTGCAGGGCGAGAGGAGGCGCAGGGCCGAGGAGAGGAGGAAGCTGCTC GAGTGGTTTGCCGCCGGCGACCCGAGGTTCAGCGTCGAGAAGCTGCTGGAGGAGGCCGAGCGCATGGGATGA |