© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2065 |
| Gene name | |
| Location | Contig_1480:2029..3259 |
| Strand | - |
| Gene length (bp) | 1230 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02582 | DUF155 | RMND1/Sif2-Sif3/Mrx10, DUF155 | 7.6E-46 | 166 | 349 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05648|MRX10_YEAST | MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 | 75 | 405 | 3.0E-35 |
| sp|Q9NWS8|RMND1_HUMAN | Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 | 119 | 393 | 2.0E-34 |
| sp|Q5RAR5|RMND1_PONAB | Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 | 119 | 393 | 1.0E-33 |
| sp|Q8CI78|RMND1_MOUSE | Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 | 158 | 393 | 2.0E-33 |
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 88 | 396 | 2.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05648|MRX10_YEAST | MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 | 75 | 405 | 3.0E-35 |
| sp|Q9NWS8|RMND1_HUMAN | Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 | 119 | 393 | 2.0E-34 |
| sp|Q5RAR5|RMND1_PONAB | Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 | 119 | 393 | 1.0E-33 |
| sp|Q8CI78|RMND1_MOUSE | Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 | 158 | 393 | 2.0E-33 |
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 88 | 396 | 2.0E-23 |
| sp|O74446|SIF2_SCHPO | Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 | 165 | 397 | 5.0E-17 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 157 | 398 | 3.0E-13 |
| sp|Q09877|SIF3_SCHPO | Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 | 145 | 369 | 8.0E-10 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1274 | 0.0785 | 0.0525 | 0.0731 | 0.8208 | 0.0546 | 0.1039 | 0.0498 | 0.2116 | 0.0032 |
| Orthofinder run ID | 4 |
| Orthogroup | 1931 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2065 MLVASQRIACVNASRQVSSVVGCGRPRRCLHLTAAASAPRRRHFFTSNPFLSNSAASGDEPAPPEPTSAPAAKRK PPRAATAKKSLRRVAIIAQQPKRDKSEKAAAAAAATTTATTTISATCVAEAFNMPVVVEVLESHGFAIDPDGTGF DASEVVHARSANGGDIFVFPSGTVVTWCLPADAMRRQLAAAAEEAHGPEQCEAEELDFVTDTSKAESTMRGDVVV LGTRREDADGDRLDTTLAKVAFSSGLARSTKLAVLESALTAYIESTRTIPARLSQGAGVPVGRRLILRKTGELLG LRARLNHYSELTDSLPDIFWDSRAELGLEGYYDLVGRALDVNVRIRTLNQKMDYAQEIASVLREVSSEQHGTRLE LIIILLIAVEVVFELRRICLEWADAAEPPAPSAP* |
| Coding | >Hirsu2|2065 ATGCTGGTTGCGTCGCAGAGGATTGCGTGCGTTAATGCGTCGCGACAAGTGAGCAGCGTCGTCGGCTGCGGCCGG CCACGACGATGCCTGCACCTCACGGCGGCGGCGAGCGCGCCCCGGAGGCGCCACTTCTTCACCTCCAACCCCTTC CTCTCCAACTCCGCTGCGTCCGGCGACGAGCCGGCACCGCCTGAACCGACATCGGCGCCGGCCGCGAAGAGGAAA CCGCCGCGGGCGGCGACGGCGAAGAAGTCGCTGCGGCGCGTGGCCATCATCGCGCAGCAGCCGAAGCGCGACAAG AGCGAGAAGGCGGCGGCGGCGGCGGCGGCGACGACGACGGCGACGACGACCATCAGCGCGACGTGCGTGGCCGAG GCCTTCAACATGCCGGTGGTGGTGGAGGTGCTGGAGTCGCACGGGTTCGCCATCGACCCGGACGGGACGGGCTTC GACGCCAGCGAGGTGGTGCACGCCAGGAGCGCCAACGGCGGCGACATCTTCGTCTTCCCGTCCGGGACGGTGGTG ACGTGGTGCCTGCCGGCGGACGCGATGCGGCGGCAGCTGGCGGCGGCGGCGGAGGAGGCGCACGGGCCGGAGCAG TGCGAGGCCGAGGAGCTCGACTTCGTCACCGACACGAGCAAGGCGGAGAGCACGATGCGGGGCGACGTGGTGGTG CTGGGCACGCGGCGCGAGGACGCCGACGGCGACCGGCTCGACACGACGCTGGCCAAGGTGGCCTTCTCGTCGGGC CTGGCGCGCAGCACCAAGCTGGCCGTGCTGGAGAGCGCGCTGACGGCCTACATCGAGAGCACGCGCACGATCCCG GCCCGGCTGTCGCAGGGCGCCGGCGTGCCCGTCGGCCGCCGCCTGATCCTGCGCAAGACGGGCGAGCTGCTCGGC CTGCGCGCCCGCCTCAACCACTACTCGGAGCTGACCGACTCGCTGCCCGACATCTTCTGGGACAGCCGGGCCGAG CTCGGGCTCGAGGGCTACTACGACCTGGTCGGCCGCGCCCTCGACGTCAACGTCCGCATCCGCACCCTCAACCAG AAGATGGACTACGCCCAGGAGATCGCCAGCGTGCTGCGCGAGGTCTCGAGCGAGCAGCACGGCACCCGCCTCGAG CTCATCATCATCCTGCTCATCGCCGTCGAGGTCGTCTTCGAGCTGCGCCGCATCTGCCTCGAGTGGGCCGACGCC GCCGAGCCCCCCGCCCCGTCGGCCCCGTAG |
| Transcript | >Hirsu2|2065 ATGCTGGTTGCGTCGCAGAGGATTGCGTGCGTTAATGCGTCGCGACAAGTGAGCAGCGTCGTCGGCTGCGGCCGG CCACGACGATGCCTGCACCTCACGGCGGCGGCGAGCGCGCCCCGGAGGCGCCACTTCTTCACCTCCAACCCCTTC CTCTCCAACTCCGCTGCGTCCGGCGACGAGCCGGCACCGCCTGAACCGACATCGGCGCCGGCCGCGAAGAGGAAA CCGCCGCGGGCGGCGACGGCGAAGAAGTCGCTGCGGCGCGTGGCCATCATCGCGCAGCAGCCGAAGCGCGACAAG AGCGAGAAGGCGGCGGCGGCGGCGGCGGCGACGACGACGGCGACGACGACCATCAGCGCGACGTGCGTGGCCGAG GCCTTCAACATGCCGGTGGTGGTGGAGGTGCTGGAGTCGCACGGGTTCGCCATCGACCCGGACGGGACGGGCTTC GACGCCAGCGAGGTGGTGCACGCCAGGAGCGCCAACGGCGGCGACATCTTCGTCTTCCCGTCCGGGACGGTGGTG ACGTGGTGCCTGCCGGCGGACGCGATGCGGCGGCAGCTGGCGGCGGCGGCGGAGGAGGCGCACGGGCCGGAGCAG TGCGAGGCCGAGGAGCTCGACTTCGTCACCGACACGAGCAAGGCGGAGAGCACGATGCGGGGCGACGTGGTGGTG CTGGGCACGCGGCGCGAGGACGCCGACGGCGACCGGCTCGACACGACGCTGGCCAAGGTGGCCTTCTCGTCGGGC CTGGCGCGCAGCACCAAGCTGGCCGTGCTGGAGAGCGCGCTGACGGCCTACATCGAGAGCACGCGCACGATCCCG GCCCGGCTGTCGCAGGGCGCCGGCGTGCCCGTCGGCCGCCGCCTGATCCTGCGCAAGACGGGCGAGCTGCTCGGC CTGCGCGCCCGCCTCAACCACTACTCGGAGCTGACCGACTCGCTGCCCGACATCTTCTGGGACAGCCGGGCCGAG CTCGGGCTCGAGGGCTACTACGACCTGGTCGGCCGCGCCCTCGACGTCAACGTCCGCATCCGCACCCTCAACCAG AAGATGGACTACGCCCAGGAGATCGCCAGCGTGCTGCGCGAGGTCTCGAGCGAGCAGCACGGCACCCGCCTCGAG CTCATCATCATCCTGCTCATCGCCGTCGAGGTCGTCTTCGAGCTGCGCCGCATCTGCCTCGAGTGGGCCGACGCC GCCGAGCCCCCCGCCCCGTCGGCCCCGTAG |
| Gene | >Hirsu2|2065 ATGCTGGTTGCGTCGCAGAGGATTGCGTGCGTTAATGCGTCGCGACAAGTGAGCAGCGTCGTCGGCTGCGGCCGG CCACGACGATGCCTGCACCTCACGGCGGCGGCGAGCGCGCCCCGGAGGCGCCACTTCTTCACCTCCAACCCCTTC CTCTCCAACTCCGCTGCGTCCGGCGACGAGCCGGCACCGCCTGAACCGACATCGGCGCCGGCCGCGAAGAGGAAA CCGCCGCGGGCGGCGACGGCGAAGAAGTCGCTGCGGCGCGTGGCCATCATCGCGCAGCAGCCGAAGCGCGACAAG AGCGAGAAGGCGGCGGCGGCGGCGGCGGCGACGACGACGGCGACGACGACCATCAGCGCGACGTGCGTGGCCGAG GCCTTCAACATGCCGGTGGTGGTGGAGGTGCTGGAGTCGCACGGGTTCGCCATCGACCCGGACGGGACGGGCTTC GACGCCAGCGAGGTGGTGCACGCCAGGAGCGCCAACGGCGGCGACATCTTCGTCTTCCCGTCCGGGACGGTGGTG ACGTGGTGCCTGCCGGCGGACGCGATGCGGCGGCAGCTGGCGGCGGCGGCGGAGGAGGCGCACGGGCCGGAGCAG TGCGAGGCCGAGGAGCTCGACTTCGTCACCGACACGAGCAAGGCGGAGAGCACGATGCGGGGCGACGTGGTGGTG CTGGGCACGCGGCGCGAGGACGCCGACGGCGACCGGCTCGACACGACGCTGGCCAAGGTGGCCTTCTCGTCGGGC CTGGCGCGCAGCACCAAGCTGGCCGTGCTGGAGAGCGCGCTGACGGCCTACATCGAGAGCACGCGCACGATCCCG GCCCGGCTGTCGCAGGGCGCCGGCGTGCCCGTCGGCCGCCGCCTGATCCTGCGCAAGACGGGCGAGCTGCTCGGC CTGCGCGCCCGCCTCAACCACTACTCGGAGCTGACCGACTCGCTGCCCGACATCTTCTGGGACAGCCGGGCCGAG CTCGGGCTCGAGGGCTACTACGACCTGGTCGGCCGCGCCCTCGACGTCAACGTCCGCATCCGCACCCTCAACCAG AAGATGGACTACGCCCAGGAGATCGCCAGCGTGCTGCGCGAGGTCTCGAGCGAGCAGCACGGCACCCGCCTCGAG CTCATCATCATCCTGCTCATCGCCGTCGAGGTCGTCTTCGAGCTGCGCCGCATCTGCCTCGAGTGGGCCGACGCC GCCGAGCCCCCCGCCCCGTCGGCCCCGTAG |