© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2062 |
| Gene name | |
| Location | Contig_148:30282..32455 |
| Strand | - |
| Gene length (bp) | 2173 |
| Transcript length (bp) | 2079 |
| Coding sequence length (bp) | 2079 |
| Protein length (aa) | 693 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08144 | CPL | CPL (NUC119) domain | 7.5E-41 | 433 | 578 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UU76|PUF6_SCHPO | Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 | 33 | 645 | 6.0E-101 |
| sp|Q04373|PUF6_YEAST | Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 | 95 | 622 | 4.0E-75 |
| sp|X1WGX5|PUM3_DANRE | Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 | 4 | 644 | 1.0E-60 |
| sp|Q8BKS9|PUM3_MOUSE | Pumilio homolog 3 OS=Mus musculus GN=Pum3 PE=1 SV=2 | 113 | 624 | 7.0E-57 |
| sp|Q562C7|PUM3_RAT | Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 | 113 | 626 | 9.0E-57 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UU76|PUF6_SCHPO | Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 | 33 | 645 | 6.0E-101 |
| sp|Q04373|PUF6_YEAST | Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 | 95 | 622 | 4.0E-75 |
| sp|X1WGX5|PUM3_DANRE | Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 | 4 | 644 | 1.0E-60 |
| sp|Q8BKS9|PUM3_MOUSE | Pumilio homolog 3 OS=Mus musculus GN=Pum3 PE=1 SV=2 | 113 | 624 | 7.0E-57 |
| sp|Q562C7|PUM3_RAT | Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 | 113 | 626 | 9.0E-57 |
| sp|Q15397|PUM3_HUMAN | Pumilio homolog 3 OS=Homo sapiens GN=PUM3 PE=1 SV=3 | 113 | 647 | 5.0E-54 |
| sp|Q09622|PUF12_CAEEL | Pumilio domain-containing protein 12 OS=Caenorhabditis elegans GN=puf-12 PE=3 SV=1 | 88 | 519 | 4.0E-37 |
| sp|Q9LRZ3|PUM24_ARATH | Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1 | 36 | 635 | 3.0E-33 |
| sp|O61345|PENG_DROME | Protein penguin OS=Drosophila melanogaster GN=peng PE=2 SV=1 | 48 | 535 | 2.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.1867 | 0.8218 | 0.1844 | 0.0147 | 0.1516 | 0.0042 | 0.048 | 0.0128 | 0.0553 | 0.0005 |
| Orthofinder run ID | 4 |
| Orthogroup | 1929 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2062 MASKDSSKAGDKRKASAGGKGKPDGKTKKARLGDPKPSNKAAKDESDGFGGFSDSGSDDDGGVKLEVRQPKKPST QTAPAADGFDRGGLTSREAHAKQKQLAQERKAAKPLADEVQRTKKIWERLRMKSHVPKDERQKLVKELFGIITGR CRDFVLKHDAVRAVQTAIKYSTPEQRKQIARELEGSYAQLAESRYAKFLIGKLLVHSDDEIRDLIIPNFYGKVRK LINHAEASWILDDVYRTVATKEQKAMLLREWYGPEFALREMTKDTKPTADLKQILAGEPSKRGPIMKSLFDMINS LVQKKMTGFTMLHDAMLQYFENTQVGTDEFTELTELVRGDESGDLLKNMAFTKSGSRLSCLLLAHGSSKDRKQLL KSYKDTFVLMSGDAYAHVVILTAFDVIDDTKLLSKAVFPELLGDKEEEMAQNVVGAVNNAHARTTILYLFEGLSS SLFPASHGFDVETLKEMHEIRKSTSKKDEDVRRKELVAALAPHLLSAIAAAPGELTATAFGCQFVTDVLLSEVGD KTKALEAIAQSAAGDPQAEPAEEDGASARPHTSRTAFGGRMLKSLIQGGKFDRAAGKVVQVQPPLRFANMVYPII KDHVMDWATGPGSFVVVALMEAGDFDEREALRKTLSKKRKQLEKAATEMTAEQKASREAQEKAVTEKGEKKAKKK GEGAVGNAGSRLLLEKL* |
| Coding | >Hirsu2|2062 ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGCGGCCTGACGTCGCGCGAGGCGCACGCGAAGCAGAAGCAG CTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAAGAAGATCTGGGAGCGGCTG CGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTTCGGCATCATCACCGGCCGC TGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAAGTACTCGACGCCGGAGCAG CGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCGCTACGCCAAGTTCCTCATC GGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTTCTACGGCAAGGTCCGCAAG CTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGCGACCAAGGAACAGAAGGCG ATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGACACGAAGCCGACGGCGGAC CTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCTCTTCGACATGATCAACTCG CTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTACTTTGAAAACACGCAGGTC GGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGACCTGCTGAAGAACATGGCC TTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAAGGATCGGAAACAGCTGCTC AAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGTCATCCTGACGGCCTTTGAC GTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGACAAGGAGGAGGAGATGGCG CAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCTCTTCGAGGGCCTGTCCAGC TCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGAAATCCGCAAGTCGACGAGC AAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCTGCTGTCGGCCATTGCGGCC GCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCTGCTCTCCGAGGTCGGGGAC AAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGAGCCGGCCGAGGAGGACGGG GCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTCGCTGATCCAGGGAGGCAAG TTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAACATGGTCTACCCCATCATC AAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCTGATGGAGGCGGGCGACTTT GACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAAGGCGGCGACGGAGATGACG GCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGAGAAGAAGGCGAAGAAGAAG GGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG |
| Transcript | >Hirsu2|2062 ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGCGGCCTGACGTCGCGCGAGGCGCACGCGAAGCAGAAGCAG CTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAAGAAGATCTGGGAGCGGCTG CGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTTCGGCATCATCACCGGCCGC TGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAAGTACTCGACGCCGGAGCAG CGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCGCTACGCCAAGTTCCTCATC GGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTTCTACGGCAAGGTCCGCAAG CTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGCGACCAAGGAACAGAAGGCG ATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGACACGAAGCCGACGGCGGAC CTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCTCTTCGACATGATCAACTCG CTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTACTTTGAAAACACGCAGGTC GGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGACCTGCTGAAGAACATGGCC TTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAAGGATCGGAAACAGCTGCTC AAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGTCATCCTGACGGCCTTTGAC GTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGACAAGGAGGAGGAGATGGCG CAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCTCTTCGAGGGCCTGTCCAGC TCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGAAATCCGCAAGTCGACGAGC AAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCTGCTGTCGGCCATTGCGGCC GCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCTGCTCTCCGAGGTCGGGGAC AAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGAGCCGGCCGAGGAGGACGGG GCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTCGCTGATCCAGGGAGGCAAG TTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAACATGGTCTACCCCATCATC AAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCTGATGGAGGCGGGCGACTTT GACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAAGGCGGCGACGGAGATGACG GCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGAGAAGAAGGCGAAGAAGAAG GGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG |
| Gene | >Hirsu2|2062 ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGTACGTCGCCGCCCCCGGCCCGGCCAACGCGCCTGACGCGA CGTTCCTTTCTTTCTTTCTTTTCCCCCTTGTTTTGCTGACGCTGTGCGGATAGGCGGCCTGACGTCGCGCGAGGC GCACGCGAAGCAGAAGCAGCTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAA GAAGATCTGGGAGCGGCTGCGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTT CGGCATCATCACCGGCCGCTGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAA GTACTCGACGCCGGAGCAGCGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCG CTACGCCAAGTTCCTCATCGGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTT CTACGGCAAGGTCCGCAAGCTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGC GACCAAGGAACAGAAGGCGATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGA CACGAAGCCGACGGCGGACCTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCT CTTCGACATGATCAACTCGCTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTA CTTTGAAAACACGCAGGTCGGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGA CCTGCTGAAGAACATGGCCTTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAA GGATCGGAAACAGCTGCTCAAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGT CATCCTGACGGCCTTTGACGTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGA CAAGGAGGAGGAGATGGCGCAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCT CTTCGAGGGCCTGTCCAGCTCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGA AATCCGCAAGTCGACGAGCAAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCT GCTGTCGGCCATTGCGGCCGCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCT GCTCTCCGAGGTCGGGGACAAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGA GCCGGCCGAGGAGGACGGGGCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTC GCTGATCCAGGGAGGCAAGTTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAA CATGGTCTACCCCATCATCAAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCT GATGGAGGCGGGCGACTTTGACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAA GGCGGCGACGGAGATGACGGCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGA GAAGAAGGCGAAGAAGAAGGGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG |