Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2062
Gene name
LocationContig_148:30282..32455
Strand-
Gene length (bp)2173
Transcript length (bp)2079
Coding sequence length (bp)2079
Protein length (aa) 693

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08144 CPL CPL (NUC119) domain 1.4E-42 433 578

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 33 645 6.0E-101
sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 95 622 4.0E-75
sp|X1WGX5|PUM3_DANRE Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 4 644 1.0E-60
sp|Q8BKS9|PUM3_MOUSE Pumilio homolog 3 OS=Mus musculus GN=Pum3 PE=1 SV=2 113 624 7.0E-57
sp|Q562C7|PUM3_RAT Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 113 626 9.0E-57
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 33 645 6.0E-101
sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 95 622 4.0E-75
sp|X1WGX5|PUM3_DANRE Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 4 644 1.0E-60
sp|Q8BKS9|PUM3_MOUSE Pumilio homolog 3 OS=Mus musculus GN=Pum3 PE=1 SV=2 113 624 7.0E-57
sp|Q562C7|PUM3_RAT Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 113 626 9.0E-57
sp|Q15397|PUM3_HUMAN Pumilio homolog 3 OS=Homo sapiens GN=PUM3 PE=1 SV=3 113 647 5.0E-54
sp|Q09622|PUF12_CAEEL Pumilio domain-containing protein 12 OS=Caenorhabditis elegans GN=puf-12 PE=3 SV=1 88 519 4.0E-37
sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1 36 635 3.0E-33
sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster GN=peng PE=2 SV=1 48 535 2.0E-28
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 35 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2062
MASKDSSKAGDKRKASAGGKGKPDGKTKKARLGDPKPSNKAAKDESDGFGGFSDSGSDDDGGVKLEVRQPKKPST
QTAPAADGFDRGGLTSREAHAKQKQLAQERKAAKPLADEVQRTKKIWERLRMKSHVPKDERQKLVKELFGIITGR
CRDFVLKHDAVRAVQTAIKYSTPEQRKQIARELEGSYAQLAESRYAKFLIGKLLVHSDDEIRDLIIPNFYGKVRK
LINHAEASWILDDVYRTVATKEQKAMLLREWYGPEFALREMTKDTKPTADLKQILAGEPSKRGPIMKSLFDMINS
LVQKKMTGFTMLHDAMLQYFENTQVGTDEFTELTELVRGDESGDLLKNMAFTKSGSRLSCLLLAHGSSKDRKQLL
KSYKDTFVLMSGDAYAHVVILTAFDVIDDTKLLSKAVFPELLGDKEEEMAQNVVGAVNNAHARTTILYLFEGLSS
SLFPASHGFDVETLKEMHEIRKSTSKKDEDVRRKELVAALAPHLLSAIAAAPGELTATAFGCQFVTDVLLSEVGD
KTKALEAIAQSAAGDPQAEPAEEDGASARPHTSRTAFGGRMLKSLIQGGKFDRAAGKVVQVQPPLRFANMVYPII
KDHVMDWATGPGSFVVVALMEAGDFDEREALRKTLSKKRKQLEKAATEMTAEQKASREAQEKAVTEKGEKKAKKK
GEGAVGNAGSRLLLEKL*
Coding >Hirsu2|2062
ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT
AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA
GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG
CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGCGGCCTGACGTCGCGCGAGGCGCACGCGAAGCAGAAGCAG
CTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAAGAAGATCTGGGAGCGGCTG
CGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTTCGGCATCATCACCGGCCGC
TGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAAGTACTCGACGCCGGAGCAG
CGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCGCTACGCCAAGTTCCTCATC
GGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTTCTACGGCAAGGTCCGCAAG
CTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGCGACCAAGGAACAGAAGGCG
ATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGACACGAAGCCGACGGCGGAC
CTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCTCTTCGACATGATCAACTCG
CTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTACTTTGAAAACACGCAGGTC
GGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGACCTGCTGAAGAACATGGCC
TTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAAGGATCGGAAACAGCTGCTC
AAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGTCATCCTGACGGCCTTTGAC
GTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGACAAGGAGGAGGAGATGGCG
CAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCTCTTCGAGGGCCTGTCCAGC
TCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGAAATCCGCAAGTCGACGAGC
AAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCTGCTGTCGGCCATTGCGGCC
GCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCTGCTCTCCGAGGTCGGGGAC
AAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGAGCCGGCCGAGGAGGACGGG
GCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTCGCTGATCCAGGGAGGCAAG
TTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAACATGGTCTACCCCATCATC
AAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCTGATGGAGGCGGGCGACTTT
GACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAAGGCGGCGACGGAGATGACG
GCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGAGAAGAAGGCGAAGAAGAAG
GGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG
Transcript >Hirsu2|2062
ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT
AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA
GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG
CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGCGGCCTGACGTCGCGCGAGGCGCACGCGAAGCAGAAGCAG
CTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAAGAAGATCTGGGAGCGGCTG
CGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTTCGGCATCATCACCGGCCGC
TGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAAGTACTCGACGCCGGAGCAG
CGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCGCTACGCCAAGTTCCTCATC
GGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTTCTACGGCAAGGTCCGCAAG
CTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGCGACCAAGGAACAGAAGGCG
ATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGACACGAAGCCGACGGCGGAC
CTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCTCTTCGACATGATCAACTCG
CTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTACTTTGAAAACACGCAGGTC
GGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGACCTGCTGAAGAACATGGCC
TTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAAGGATCGGAAACAGCTGCTC
AAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGTCATCCTGACGGCCTTTGAC
GTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGACAAGGAGGAGGAGATGGCG
CAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCTCTTCGAGGGCCTGTCCAGC
TCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGAAATCCGCAAGTCGACGAGC
AAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCTGCTGTCGGCCATTGCGGCC
GCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCTGCTCTCCGAGGTCGGGGAC
AAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGAGCCGGCCGAGGAGGACGGG
GCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTCGCTGATCCAGGGAGGCAAG
TTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAACATGGTCTACCCCATCATC
AAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCTGATGGAGGCGGGCGACTTT
GACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAAGGCGGCGACGGAGATGACG
GCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGAGAAGAAGGCGAAGAAGAAG
GGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG
Gene >Hirsu2|2062
ATGGCTTCCAAAGATTCTTCCAAAGCCGGCGACAAGAGGAAAGCGAGCGCGGGCGGGAAGGGCAAGCCGGACGGT
AAGACTAAGAAGGCCCGGCTCGGCGACCCGAAACCCTCCAACAAGGCCGCAAAGGACGAGTCTGATGGCTTTGGA
GGCTTCTCCGACTCCGGCTCGGATGACGACGGAGGCGTGAAGCTCGAGGTGCGCCAGCCGAAAAAGCCATCCACG
CAGACAGCCCCGGCCGCCGATGGCTTCGATCGTGGTACGTCGCCGCCCCCGGCCCGGCCAACGCGCCTGACGCGA
CGTTCCTTTCTTTCTTTCTTTTCCCCCTTGTTTTGCTGACGCTGTGCGGATAGGCGGCCTGACGTCGCGCGAGGC
GCACGCGAAGCAGAAGCAGCTGGCGCAGGAGCGCAAGGCGGCCAAGCCCCTCGCCGACGAGGTGCAGCGGACCAA
GAAGATCTGGGAGCGGCTGCGCATGAAGTCCCACGTGCCCAAGGACGAGCGGCAAAAGCTTGTCAAGGAACTCTT
CGGCATCATCACCGGCCGCTGCCGCGACTTCGTGCTCAAGCACGACGCCGTCCGCGCCGTCCAGACGGCCATCAA
GTACTCGACGCCGGAGCAGCGGAAGCAGATCGCGAGGGAGCTCGAGGGGAGCTACGCGCAGCTGGCCGAGAGCCG
CTACGCCAAGTTCCTCATCGGCAAGCTGCTGGTGCACAGCGACGACGAGATCCGGGACCTCATCATCCCCAACTT
CTACGGCAAGGTCCGCAAGCTCATCAACCACGCCGAGGCGTCGTGGATCCTCGACGACGTCTACCGCACCGTCGC
GACCAAGGAACAGAAGGCGATGCTCCTGCGCGAGTGGTACGGGCCCGAGTTCGCCCTGCGGGAGATGACCAAGGA
CACGAAGCCGACGGCGGACCTCAAGCAGATCCTCGCCGGCGAGCCCAGCAAGCGCGGCCCCATCATGAAGAGCCT
CTTCGACATGATCAACTCGCTCGTGCAGAAGAAGATGACGGGCTTCACGATGCTGCACGACGCCATGCTGCAGTA
CTTTGAAAACACGCAGGTCGGCACGGACGAGTTCACCGAGCTGACCGAGCTGGTCCGGGGCGACGAGAGCGGCGA
CCTGCTGAAGAACATGGCCTTCACCAAGTCGGGCTCTCGGCTGAGCTGCCTGCTGCTGGCGCACGGCAGCTCCAA
GGATCGGAAACAGCTGCTCAAGTCGTACAAGGACACCTTCGTCCTCATGTCGGGGGACGCCTACGCTCACGTCGT
CATCCTGACGGCCTTTGACGTCATCGACGACACCAAGCTGCTTTCCAAGGCCGTCTTCCCCGAGCTGCTGGGCGA
CAAGGAGGAGGAGATGGCGCAGAACGTGGTGGGCGCCGTCAACAACGCCCACGCGAGGACGACGATACTCTATCT
CTTCGAGGGCCTGTCCAGCTCTCTCTTCCCGGCCAGCCACGGCTTCGACGTGGAGACGCTCAAGGAGATGCACGA
AATCCGCAAGTCGACGAGCAAGAAGGACGAGGACGTGCGGCGCAAGGAGCTGGTGGCCGCGCTGGCACCGCACCT
GCTGTCGGCCATTGCGGCCGCGCCGGGGGAGCTGACGGCGACGGCCTTTGGCTGCCAGTTCGTGACGGACGTGCT
GCTCTCCGAGGTCGGGGACAAGACCAAGGCGCTCGAGGCCATCGCGCAGTCGGCCGCGGGCGACCCGCAGGCAGA
GCCGGCCGAGGAGGACGGGGCGTCGGCCCGGCCGCACACGTCGCGGACGGCCTTTGGCGGGCGCATGCTCAAGTC
GCTGATCCAGGGAGGCAAGTTCGACAGGGCGGCGGGCAAGGTGGTGCAGGTGCAGCCGCCGCTGCGGTTCGCCAA
CATGGTCTACCCCATCATCAAGGACCACGTCATGGACTGGGCCACGGGCCCGGGCTCCTTCGTCGTCGTGGCCCT
GATGGAGGCGGGCGACTTTGACGAGAGGGAGGCGCTGCGAAAGACGCTGTCGAAGAAGAGGAAGCAGCTGGAGAA
GGCGGCGACGGAGATGACGGCGGAGCAGAAGGCGAGCAGGGAGGCACAGGAGAAGGCGGTGACGGAAAAGGGCGA
GAAGAAGGCGAAGAAGAAGGGCGAGGGCGCGGTCGGAAACGCGGGCAGCAGACTGCTGCTGGAGAAGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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