Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2058
Gene name
LocationContig_148:24832..25533
Strand-
Gene length (bp)701
Transcript length (bp)534
Coding sequence length (bp)534
Protein length (aa) 178

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04099 Sybindin Sybindin-like family 3.1E-52 24 173
PF04628 Sedlin_N Sedlin, N-terminal conserved region 2.0E-06 100 169

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1 26 171 6.0E-39
sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1 22 167 6.0E-37
sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1 46 167 3.0E-30
sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1 46 167 4.0E-30
sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1 46 167 4.0E-30
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Swissprot ID Swissprot Description Start End E-value
sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1 26 171 6.0E-39
sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1 22 167 6.0E-37
sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1 46 167 3.0E-30
sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1 46 167 4.0E-30
sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1 46 167 4.0E-30
sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 46 167 1.0E-29
sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1 46 167 1.0E-29
sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1 SV=1 22 174 1.0E-21
sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1 24 174 1.0E-09
sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1 22 174 7.0E-07
sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1 22 174 7.0E-07
sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1 22 174 2.0E-06
sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 22 174 2.0E-06
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GO

GO Term Description Terminal node
GO:0030008 TRAPP complex Yes
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Yes
GO:0005622 intracellular Yes
GO:0016192 vesicle-mediated transport Yes
GO:0099023 tethering complex No
GO:0046907 intracellular transport No
GO:0008150 biological_process No
GO:0051649 establishment of localization in cell No
GO:0044464 cell part No
GO:0006810 transport No
GO:0032991 protein-containing complex No
GO:0051179 localization No
GO:0044424 intracellular part No
GO:0051234 establishment of localization No
GO:0048193 Golgi vesicle transport No
GO:0051641 cellular localization No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2058
LQQGQQNTDVARRWRPSASFAMTVFSLIIINKAGGLVYNRTFHDAGLNKISTNDYLVLAGTFHGVHAITARLNPV
KPPPPVLPPGGAGLPHRPEPSSGIEVLETENFRMQCFNTMTGTKFLLFTDTTQVNVDLTLRRIYDLYADYVMKNP
FYSLEMPVRCDIFDRKLLSYIREINNR*
Coding >Hirsu2|2058
CTGCAACAGGGCCAGCAGAACACCGACGTTGCGCGTCGCTGGCGCCCAAGCGCATCCTTCGCCATGACCGTCTTC
TCCCTCATCATCATCAACAAGGCCGGCGGCCTGGTGTACAACCGGACCTTTCACGATGCCGGCCTCAACAAGATC
AGCACCAACGACTACCTCGTCCTCGCCGGCACCTTTCACGGCGTCCACGCCATCACGGCCCGCCTCAACCCCGTC
AAGCCCCCGCCGCCGGTCCTCCCCCCCGGCGGCGCCGGCCTCCCCCACAGGCCGGAGCCGTCGTCGGGCATCGAG
GTGCTCGAGACGGAAAACTTCCGCATGCAGTGCTTCAACACCATGACCGGCACCAAGTTTCTGCTCTTTACCGAC
ACGACCCAGGTCAACGTAGACCTGACGCTGAGGAGGATATATGACCTGTACGCCGACTACGTCATGAAGAATCCC
TTTTACTCTCTAGAAATGCCCGTCCGGTGTGATATTTTTGACCGAAAGCTCCTGTCATATATTAGAGAGATCAAC
AATCGGTGA
Transcript >Hirsu2|2058
CTGCAACAGGGCCAGCAGAACACCGACGTTGCGCGTCGCTGGCGCCCAAGCGCATCCTTCGCCATGACCGTCTTC
TCCCTCATCATCATCAACAAGGCCGGCGGCCTGGTGTACAACCGGACCTTTCACGATGCCGGCCTCAACAAGATC
AGCACCAACGACTACCTCGTCCTCGCCGGCACCTTTCACGGCGTCCACGCCATCACGGCCCGCCTCAACCCCGTC
AAGCCCCCGCCGCCGGTCCTCCCCCCCGGCGGCGCCGGCCTCCCCCACAGGCCGGAGCCGTCGTCGGGCATCGAG
GTGCTCGAGACGGAAAACTTCCGCATGCAGTGCTTCAACACCATGACCGGCACCAAGTTTCTGCTCTTTACCGAC
ACGACCCAGGTCAACGTAGACCTGACGCTGAGGAGGATATATGACCTGTACGCCGACTACGTCATGAAGAATCCC
TTTTACTCTCTAGAAATGCCCGTCCGGTGTGATATTTTTGACCGAAAGCTCCTGTCATATATTAGAGAGATCAAC
AATCGGTGA
Gene >Hirsu2|2058
CTGCAACAGGGCCAGCAGAACACCGACGTTGCGCGTCGCTGGCGCCCAAGCGCATCCTTCGCCATGTGCGTCCGC
CCGACCCCGATCCGCTCTCCTCTCCTCTCGCCCCTGGGCTGGCGGCTCCCGCAGCGCCCGCTCACCGCTCGGCAG
GACCGTCTTCTCCCTCATCATCATCAACAAGGCCGGCGGCCTGGTGTACAACCGGACCTTTCACGATGCCGGCCT
CAACAAGATCAGCACCAACGACTACCTCGTCCTCGCCGGCACCTTTCACGGGTAAGGCCCAGCCAGCTGTTCACA
CCTCATCATCACCTGCAGAAAAGGCCCCCCTGAACTTACCCGTCTCCTCCCTCGTCAGCGTCCACGCCATCACGG
CCCGCCTCAACCCCGTCAAGCCCCCGCCGCCGGTCCTCCCCCCCGGCGGCGCCGGCCTCCCCCACAGGCCGGAGC
CGTCGTCGGGCATCGAGGTGCTCGAGACGGAAAACTTCCGCATGCAGTGCTTCAACACCATGACCGGCACCAAGT
TTCTGCTCTTTACCGACACGACCCAGGTCAACGTAGACCTGACGCTGAGGAGGATATATGACCTGTACGCCGACT
ACGTCATGAAGAATCCCTTTTACTCTCTAGAAATGCCCGTCCGGTGTGATATTTTTGACCGAAAGCTCCTGTCAT
ATATTAGAGAGATCAACAATCGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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