Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|2057
Gene name
Location	Contig_148:23696..24649
Strand	+
Gene length (bp)	953
Transcript length (bp)	897
Coding sequence length (bp)	897
Protein length (aa)	299

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13519	VWA_2	von Willebrand factor type A domain	4.3E-27	6	116
PF00092	VWA	von Willebrand factor type A domain	1.5E-12	6	157
PF04056	Ssl1	Ssl1-like	8.9E-09	9	144

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P55034\|PSMD4_ARATH	26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1	1	241	6.0E-75
sp\|O94444\|RPN10_SCHPO	26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1	1	259	2.0E-70
sp\|P38886\|RPN10_YEAST	26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3	1	234	6.0E-66
sp\|P55036\|PSMD4_HUMAN	26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1	1	234	5.0E-65
sp\|Q58DA0\|PSMD4_BOVIN	26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1	1	234	6.0E-65

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P55034\|PSMD4_ARATH	26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1	1	241	6.0E-75
sp\|O94444\|RPN10_SCHPO	26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1	1	259	2.0E-70
sp\|P38886\|RPN10_YEAST	26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3	1	234	6.0E-66
sp\|P55036\|PSMD4_HUMAN	26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1	1	234	5.0E-65
sp\|Q58DA0\|PSMD4_BOVIN	26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1	1	234	6.0E-65
sp\|O35226\|PSMD4_MOUSE	26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1	1	234	7.0E-65
sp\|Q553E0\|PSMD4_DICDI	26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1	1	251	2.0E-59
sp\|P55035\|PSMD4_DROME	26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Rpn10 PE=1 SV=2	1	246	1.0E-57
sp\|O17453\|PSMD4_SCHMA	26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2	1	242	8.0E-56
sp\|A2A3N6\|PIPSL_HUMAN	Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1	3	234	2.0E-51

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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm\|Nucleus	Nuclear localization signal\|Nuclear export signal	0.6665	0.75	0.0088	0.1176	0.1332	0.0147	0.2053	0.0966	0.2452	0.0067

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	4
Orthogroup	1927
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|6118
Ophiocordyceps australis map64 (Brazil)	OphauB2\|2646
Ophiocordyceps camponoti-floridani	Ophcf2\|07321
Ophiocordyceps camponoti-rufipedis	Ophun1\|4437
Ophiocordyceps kimflemingae	Ophio5\|8364
Ophiocordyceps subramaniannii	Hirsu2\|2057 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|2057 MVLEAVMVVVDNSESSRNGDYQPTRFDSQVDAVNVLFQSITQGNPESSVGLMSMGGKGPEVLVTLTTEQGKILEG LHRTKKKIGGSSHLKTGIQVATLALKHRQNRSQRQRIIVFVCSPVEEEEKELTQLAKKMKKGNISVDFILFGDLD DDNTKKKLQAFNEAVKGSEGSHLVVIPPSSKLLSDQLVATPILLGENASGPSGSGGMGGGDEEFEFGFDPAMEPE LALALRMSMEEEKARQEKRAREEEEAAKKASLGEVKEEDESGQAGGSGSVGGGGSQNTQQGGKKDGGDKMDTS*
Coding	>Hirsu2\|2057 ATGGTTCTCGAGGCGGTGATGGTTGTCGTGGACAACAGCGAGAGCAGCAGAAATGGAGACTACCAGCCGACTCGA TTCGACTCACAAGTCGATGCCGTCAACGTGCTCTTCCAGAGCATCACGCAAGGCAACCCGGAATCGTCGGTCGGC CTCATGAGCATGGGAGGCAAGGGACCCGAGGTGCTGGTCACGCTGACCACGGAGCAAGGAAAGATCTTGGAGGGC CTGCACCGGACGAAGAAGAAGATTGGCGGGTCGTCGCACCTGAAAACCGGCATACAGGTGGCCACGCTCGCTCTC AAGCACCGGCAGAATCGATCCCAGCGACAGCGGATAATAGTCTTTGTGTGCTCGCCGGTGGAGGAGGAGGAGAAG GAGCTCACGCAGCTGGCGAAGAAGATGAAGAAGGGCAACATCTCGGTCGACTTTATCCTGTTCGGCGACCTCGAC GACGACAACACGAAGAAGAAGCTGCAGGCCTTCAACGAGGCAGTCAAGGGCAGCGAGGGCTCGCACCTGGTGGTG ATCCCGCCCAGCAGCAAGCTCCTCAGCGACCAGCTCGTCGCCACGCCCATTCTGCTGGGCGAGAACGCGTCCGGG CCGAGCGGGTCGGGCGGCATGGGCGGCGGCGACGAAGAATTCGAGTTCGGCTTCGACCCGGCCATGGAGCCGGAG CTCGCCCTCGCCCTGCGCATGAGCATGGAGGAAGAAAAGGCGAGGCAGGAGAAGCGGGCCAGGGAGGAAGAGGAG GCGGCCAAGAAGGCTTCCCTCGGCGAGGTCAAGGAGGAGGACGAGTCCGGCCAGGCCGGAGGCAGCGGCAGCGTC GGCGGCGGCGGATCACAAAACACGCAGCAAGGAGGCAAGAAGGACGGTGGCGACAAGATGGACACGTCCTAG
Transcript	>Hirsu2\|2057 ATGGTTCTCGAGGCGGTGATGGTTGTCGTGGACAACAGCGAGAGCAGCAGAAATGGAGACTACCAGCCGACTCGA TTCGACTCACAAGTCGATGCCGTCAACGTGCTCTTCCAGAGCATCACGCAAGGCAACCCGGAATCGTCGGTCGGC CTCATGAGCATGGGAGGCAAGGGACCCGAGGTGCTGGTCACGCTGACCACGGAGCAAGGAAAGATCTTGGAGGGC CTGCACCGGACGAAGAAGAAGATTGGCGGGTCGTCGCACCTGAAAACCGGCATACAGGTGGCCACGCTCGCTCTC AAGCACCGGCAGAATCGATCCCAGCGACAGCGGATAATAGTCTTTGTGTGCTCGCCGGTGGAGGAGGAGGAGAAG GAGCTCACGCAGCTGGCGAAGAAGATGAAGAAGGGCAACATCTCGGTCGACTTTATCCTGTTCGGCGACCTCGAC GACGACAACACGAAGAAGAAGCTGCAGGCCTTCAACGAGGCAGTCAAGGGCAGCGAGGGCTCGCACCTGGTGGTG ATCCCGCCCAGCAGCAAGCTCCTCAGCGACCAGCTCGTCGCCACGCCCATTCTGCTGGGCGAGAACGCGTCCGGG CCGAGCGGGTCGGGCGGCATGGGCGGCGGCGACGAAGAATTCGAGTTCGGCTTCGACCCGGCCATGGAGCCGGAG CTCGCCCTCGCCCTGCGCATGAGCATGGAGGAAGAAAAGGCGAGGCAGGAGAAGCGGGCCAGGGAGGAAGAGGAG GCGGCCAAGAAGGCTTCCCTCGGCGAGGTCAAGGAGGAGGACGAGTCCGGCCAGGCCGGAGGCAGCGGCAGCGTC GGCGGCGGCGGATCACAAAACACGCAGCAAGGAGGCAAGAAGGACGGTGGCGACAAGATGGACACGTCCTAG
Gene	>Hirsu2\|2057 ATGGTTCTCGAGGCGGTGATGGTTGTCGTGGACAACAGCGAGAGCAGCAGAAATGGAGACTACCAGCCGACTCGA TTCGACTCACAAGTCGATGCCGTCAACGTGCTCTTCCAGAGCATCACGCAAGGCAACCCGGAATCGTCGGTCGGC CTCATGAGCATGGGAGGCAAGGGACCCGAGGTGCTGGTCACGCTGACCACGGAGCAAGGAAAGATCTTGGAGGGC CTGCACCGGACGAAGAAGAAGATTGGCGGGTCGTCGCACCTGAAAACCGGCATACAGGTGGCCACGGTAGGCCGT TTCCCGGACTCGCGGCTCGGCGGCGTTTGACTGACGGGGATTGGCAGCTCGCTCTCAAGCACCGGCAGAATCGAT CCCAGCGACAGCGGATAATAGTCTTTGTGTGCTCGCCGGTGGAGGAGGAGGAGAAGGAGCTCACGCAGCTGGCGA AGAAGATGAAGAAGGGCAACATCTCGGTCGACTTTATCCTGTTCGGCGACCTCGACGACGACAACACGAAGAAGA AGCTGCAGGCCTTCAACGAGGCAGTCAAGGGCAGCGAGGGCTCGCACCTGGTGGTGATCCCGCCCAGCAGCAAGC TCCTCAGCGACCAGCTCGTCGCCACGCCCATTCTGCTGGGCGAGAACGCGTCCGGGCCGAGCGGGTCGGGCGGCA TGGGCGGCGGCGACGAAGAATTCGAGTTCGGCTTCGACCCGGCCATGGAGCCGGAGCTCGCCCTCGCCCTGCGCA TGAGCATGGAGGAAGAAAAGGCGAGGCAGGAGAAGCGGGCCAGGGAGGAAGAGGAGGCGGCCAAGAAGGCTTCCC TCGGCGAGGTCAAGGAGGAGGACGAGTCCGGCCAGGCCGGAGGCAGCGGCAGCGTCGGCGGCGGCGGATCACAAA ACACGCAGCAAGGAGGCAAGAAGGACGGTGGCGACAAGATGGACACGTCCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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