Protein ID | Hirsu2|2056 |
Gene name | |
Location | Contig_148:21905..23165 |
Strand | - |
Gene length (bp) | 1260 |
Transcript length (bp) | 1137 |
Coding sequence length (bp) | 1137 |
Protein length (aa) | 379 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10444 | Nbl1_Borealin_N | Nbl1 / Borealin N terminal | 3.2E-21 | 53 | 107 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.3289 | 0.7826 | 0.0477 | 0.2136 | 0.3307 | 0.0138 | 0.0185 | 0.0134 | 0.0145 | 0.0028 |
Orthofinder run ID | 4 |
Orthogroup | 1926 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2056 MAPVRRKSRHSDQSSTSTGRRDDTTKVPLKGSPSTPQRRSPIRKPRMNISLQQKQALVDNLQLEVTERARRLRAQ YNLQAQGLRSRIEIRINRIPTSLRKVKMGDLILKYVEQEHNRSGGPRPPPLPAKDAIRSEVPKPASRYKVPERPL NPAHSELAGDKENEMESMQGKKKTRGAQGTEAAATAIVRPAQVLSPTSSNSRLATRDCPASPTRSMIARPGSPLK SHGTSRSAAVTSVLSSMVERAKATRHGGTRKVTNTSEASSGSGATTATAKGRRPAAAAAAAAAAKAAPTTRPATR PATRAGRRVSGTSETSEGSTATVVRKAAARAAPAATAKKTTMGAIRKGVTGIGTKKTIAKPAPAAAPTKTGRVLR KRG* |
Coding | >Hirsu2|2056 ATGGCTCCTGTTCGACGGAAGAGCCGACACTCTGACCAGTCCTCGACCTCGACGGGGAGACGCGACGACACGACC AAAGTTCCCCTCAAGGGCAGCCCTTCGACGCCTCAACGCAGGAGCCCCATCAGGAAGCCGAGGATGAACATCAGC TTGCAGCAGAAGCAGGCGCTGGTTGACAACCTGCAATTAGAGGTCACAGAACGCGCTCGGAGGCTAAGGGCGCAA TACAACCTACAGGCGCAAGGCCTTCGCTCGCGCATCGAGATTCGGATCAACCGGATCCCCACGTCGCTACGGAAA GTCAAGATGGGCGACTTGATTCTCAAGTACGTCGAGCAGGAACACAACCGATCTGGCGGTCCTCGGCCGCCCCCG TTGCCAGCCAAGGACGCGATCCGCTCCGAGGTGCCGAAGCCTGCCTCCCGTTACAAAGTTCCAGAGCGCCCCTTG AATCCTGCGCACAGTGAATTAGCGGGCGACAAGGAGAATGAGATGGAAAGCATGCAAGGCAAGAAGAAGACGCGA GGAGCTCAGGGTACTGAGGCGGCGGCGACGGCGATTGTTCGTCCAGCTCAAGTGCTCTCGCCCACCTCGTCAAAT TCGCGTCTGGCGACCCGCGATTGCCCTGCGTCGCCGACAAGGTCGATGATCGCCCGGCCAGGTTCGCCATTGAAG TCACACGGCACCAGTCGATCCGCTGCGGTAACGAGTGTCCTGTCGAGCATGGTCGAGCGGGCCAAGGCCACGCGC CACGGAGGCACGCGCAAGGTCACCAATACCTCCGAGGCCAGCTCCGGCTCCGGCGCCACGACGGCGACAGCCAAA GGCAGGCGACCCGCGGCCGCCGCTGCAGCCGCAGCGGCCGCCAAGGCCGCTCCCACCACGAGACCGGCCACGAGA CCAGCCACCCGCGCCGGCCGCCGTGTTAGCGGCACGAGCGAGACCAGCGAGGGCAGCACGGCCACGGTTGTCAGG AAGGCGGCGGCACGCGCAGCGCCGGCGGCGACGGCGAAGAAGACGACCATGGGGGCTATCCGGAAAGGCGTCACC GGAATCGGAACCAAGAAGACGATAGCAAAGCCTGCGCCGGCGGCCGCGCCAACGAAGACGGGACGCGTCTTGCGG AAGCGAGGCTAG |
Transcript | >Hirsu2|2056 ATGGCTCCTGTTCGACGGAAGAGCCGACACTCTGACCAGTCCTCGACCTCGACGGGGAGACGCGACGACACGACC AAAGTTCCCCTCAAGGGCAGCCCTTCGACGCCTCAACGCAGGAGCCCCATCAGGAAGCCGAGGATGAACATCAGC TTGCAGCAGAAGCAGGCGCTGGTTGACAACCTGCAATTAGAGGTCACAGAACGCGCTCGGAGGCTAAGGGCGCAA TACAACCTACAGGCGCAAGGCCTTCGCTCGCGCATCGAGATTCGGATCAACCGGATCCCCACGTCGCTACGGAAA GTCAAGATGGGCGACTTGATTCTCAAGTACGTCGAGCAGGAACACAACCGATCTGGCGGTCCTCGGCCGCCCCCG TTGCCAGCCAAGGACGCGATCCGCTCCGAGGTGCCGAAGCCTGCCTCCCGTTACAAAGTTCCAGAGCGCCCCTTG AATCCTGCGCACAGTGAATTAGCGGGCGACAAGGAGAATGAGATGGAAAGCATGCAAGGCAAGAAGAAGACGCGA GGAGCTCAGGGTACTGAGGCGGCGGCGACGGCGATTGTTCGTCCAGCTCAAGTGCTCTCGCCCACCTCGTCAAAT TCGCGTCTGGCGACCCGCGATTGCCCTGCGTCGCCGACAAGGTCGATGATCGCCCGGCCAGGTTCGCCATTGAAG TCACACGGCACCAGTCGATCCGCTGCGGTAACGAGTGTCCTGTCGAGCATGGTCGAGCGGGCCAAGGCCACGCGC CACGGAGGCACGCGCAAGGTCACCAATACCTCCGAGGCCAGCTCCGGCTCCGGCGCCACGACGGCGACAGCCAAA GGCAGGCGACCCGCGGCCGCCGCTGCAGCCGCAGCGGCCGCCAAGGCCGCTCCCACCACGAGACCGGCCACGAGA CCAGCCACCCGCGCCGGCCGCCGTGTTAGCGGCACGAGCGAGACCAGCGAGGGCAGCACGGCCACGGTTGTCAGG AAGGCGGCGGCACGCGCAGCGCCGGCGGCGACGGCGAAGAAGACGACCATGGGGGCTATCCGGAAAGGCGTCACC GGAATCGGAACCAAGAAGACGATAGCAAAGCCTGCGCCGGCGGCCGCGCCAACGAAGACGGGACGCGTCTTGCGG AAGCGAGGCTAG |
Gene | >Hirsu2|2056 ATGGCTCCTGTTCGACGGAAGAGCCGACACTCTGACCAGTCCTCGACCTCGACGGGGAGACGCGACGACACGACC AAAGTTCCCCTCAAGGGCAGCCCTTCGACGCCTCAACGCAGGAGCCCCATCAGGAAGCCGAGGATGAACATCAGC TTGCAGCAGAAGCAGGCGCTGGTTGACAACCTGCAATTAGAGGGTCAGCGTCCGTCTCTGCCACGCGCGGCACCT CCGCCGCCGACGACGGCGCATGCTGACACGGGACGCAGTCACAGAACGCGCTCGGAGGCTAAGGGCGCAATACAA CCTACAGGCGCAAGGCCTTCGCTCGCGCATCGAGATTCGGATCAACCGGATCCCCACGTCGCTACGGAAAGTCAA GATGGGCGACTTGATTCTCAAGTACGTCGAGCAGGAACACAACCGATCTGGCGGTCCTCGGCCGCCCCCGTTGCC AGCCAAGGACGCGATCCGCTCCGAGGTGCCGAAGCCTGCCTCCCGTTACAAAGTTCCAGAGCGCCCCTTGAATCC TGCGCAGTAAGTCTCGCAGCCGCTCCCTTGAGGAGGGCCAGAGCTAACGCTGCAGCTAGCAGTGAATTAGCGGGC GACAAGGAGAATGAGATGGAAAGCATGCAAGGCAAGAAGAAGACGCGAGGAGCTCAGGGTACTGAGGCGGCGGCG ACGGCGATTGTTCGTCCAGCTCAAGTGCTCTCGCCCACCTCGTCAAATTCGCGTCTGGCGACCCGCGATTGCCCT GCGTCGCCGACAAGGTCGATGATCGCCCGGCCAGGTTCGCCATTGAAGTCACACGGCACCAGTCGATCCGCTGCG GTAACGAGTGTCCTGTCGAGCATGGTCGAGCGGGCCAAGGCCACGCGCCACGGAGGCACGCGCAAGGTCACCAAT ACCTCCGAGGCCAGCTCCGGCTCCGGCGCCACGACGGCGACAGCCAAAGGCAGGCGACCCGCGGCCGCCGCTGCA GCCGCAGCGGCCGCCAAGGCCGCTCCCACCACGAGACCGGCCACGAGACCAGCCACCCGCGCCGGCCGCCGTGTT AGCGGCACGAGCGAGACCAGCGAGGGCAGCACGGCCACGGTTGTCAGGAAGGCGGCGGCACGCGCAGCGCCGGCG GCGACGGCGAAGAAGACGACCATGGGGGCTATCCGGAAAGGCGTCACCGGAATCGGAACCAAGAAGACGATAGCA AAGCCTGCGCCGGCGGCCGCGCCAACGAAGACGGGACGCGTCTTGCGGAAGCGAGGCTAG |