© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2052 |
| Gene name | |
| Location | Contig_148:16132..17844 |
| Strand | + |
| Gene length (bp) | 1712 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1019 | 0.0578 | 0.0934 | 0.8764 | 0.0539 | 0.0074 | 0.1396 | 0.2325 | 0.384 | 0.0141 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 180 | 202 | 22 |
| 5 | 267 | 289 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 259 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2052 MSSATPPSSAADRGAANLIAVSSVLCGLSLMAAGLRFWARHRQKVSIKADDYFILPALLFKTQMGLTLLSIISLG CTKASILFFYQRIFCVSSRKAVLNVFITASIVLVIAWMVAFEIFTAFQCRLHFNAIWDGTQLKYCDLSYPAMEGL AISDFLLDVWVLALPIYPIMKLHTTKSRRFAIAAVFLLACMYVSALTANATLSTTFIPRYLGQRPAVDIAYSGVA SSIARMVEVIKIVQTGQKAIHTTRDPMGIPPYTETQSRIMFYWILEMGIGLVAVNLPSIWMVFASVAPEAILRSI RSVVSLASIGSNGSKRSRERHAEHSKFNKSSSSIAPITSSTADIEAYAMGRREDSADTVPAGEIHVRRSVQQESN GSKTSP* |
| Coding | >Hirsu2|2052 ATGTCGTCGGCCACGCCTCCCTCCAGCGCCGCTGATCGCGGCGCCGCAAACCTCATCGCCGTCAGCTCCGTCTTG TGCGGACTGAGCCTGATGGCCGCGGGGCTGCGGTTTTGGGCCCGGCATCGTCAAAAGGTCTCGATCAAGGCAGAC GATTATTTCATACTGCCTGCCTTGTTGTTCAAGACTCAGATGGGGTTGACGCTCCTGTCCATCATCTCCCTCGGC TGCACCAAGGCCAGCATCCTCTTCTTCTACCAACGCATCTTTTGTGTGTCGAGTCGGAAGGCGGTCCTTAACGTC TTTATCACCGCGAGCATCGTCCTGGTCATAGCTTGGATGGTTGCTTTTGAAATATTCACCGCCTTCCAATGTCGC CTCCATTTCAACGCCATCTGGGATGGCACCCAGCTCAAATATTGCGATCTGTCCTACCCAGCAATGGAGGGGCTG GCCATTTCAGACTTTTTGCTCGATGTCTGGGTTCTGGCGCTTCCCATCTATCCGATCATGAAGCTTCATACCACC AAGTCTCGGAGGTTTGCCATTGCAGCCGTCTTTCTCCTAGCCTGCATGTACGTCTCTGCCTTGACCGCAAATGCC ACTCTCTCCACGACTTTTATTCCTCGTTACCTTGGTCAACGTCCGGCTGTTGACATAGCATACAGCGGAGTTGCC TCCTCCATCGCGCGGATGGTTGAGGTTATCAAGATCGTGCAAACTGGCCAGAAAGCCATTCACACTACGCGCGAT CCAATGGGGATTCCCCCTTACACAGAGACTCAATCCCGGATCATGTTCTACTGGATACTTGAAATGGGCATCGGT TTGGTTGCCGTGAACCTGCCCTCCATCTGGATGGTCTTTGCGTCCGTTGCTCCCGAGGCGATTCTTCGCAGCATC CGCAGCGTTGTGTCGCTCGCCTCCATTGGATCCAATGGCTCCAAGCGATCGCGTGAGCGTCACGCTGAGCACTCC AAGTTCAACAAGTCGTCGTCTTCCATTGCTCCCATCACGAGCTCGACGGCAGACATCGAGGCGTACGCGATGGGC AGAAGAGAGGACTCAGCTGATACGGTGCCCGCTGGGGAGATTCATGTCCGTCGTTCTGTACAGCAGGAGTCGAAT GGCTCGAAAACGTCTCCATAA |
| Transcript | >Hirsu2|2052 ATGTCGTCGGCCACGCCTCCCTCCAGCGCCGCTGATCGCGGCGCCGCAAACCTCATCGCCGTCAGCTCCGTCTTG TGCGGACTGAGCCTGATGGCCGCGGGGCTGCGGTTTTGGGCCCGGCATCGTCAAAAGGTCTCGATCAAGGCAGAC GATTATTTCATACTGCCTGCCTTGTTGTTCAAGACTCAGATGGGGTTGACGCTCCTGTCCATCATCTCCCTCGGC TGCACCAAGGCCAGCATCCTCTTCTTCTACCAACGCATCTTTTGTGTGTCGAGTCGGAAGGCGGTCCTTAACGTC TTTATCACCGCGAGCATCGTCCTGGTCATAGCTTGGATGGTTGCTTTTGAAATATTCACCGCCTTCCAATGTCGC CTCCATTTCAACGCCATCTGGGATGGCACCCAGCTCAAATATTGCGATCTGTCCTACCCAGCAATGGAGGGGCTG GCCATTTCAGACTTTTTGCTCGATGTCTGGGTTCTGGCGCTTCCCATCTATCCGATCATGAAGCTTCATACCACC AAGTCTCGGAGGTTTGCCATTGCAGCCGTCTTTCTCCTAGCCTGCATGTACGTCTCTGCCTTGACCGCAAATGCC ACTCTCTCCACGACTTTTATTCCTCGTTACCTTGGTCAACGTCCGGCTGTTGACATAGCATACAGCGGAGTTGCC TCCTCCATCGCGCGGATGGTTGAGGTTATCAAGATCGTGCAAACTGGCCAGAAAGCCATTCACACTACGCGCGAT CCAATGGGGATTCCCCCTTACACAGAGACTCAATCCCGGATCATGTTCTACTGGATACTTGAAATGGGCATCGGT TTGGTTGCCGTGAACCTGCCCTCCATCTGGATGGTCTTTGCGTCCGTTGCTCCCGAGGCGATTCTTCGCAGCATC CGCAGCGTTGTGTCGCTCGCCTCCATTGGATCCAATGGCTCCAAGCGATCGCGTGAGCGTCACGCTGAGCACTCC AAGTTCAACAAGTCGTCGTCTTCCATTGCTCCCATCACGAGCTCGACGGCAGACATCGAGGCGTACGCGATGGGC AGAAGAGAGGACTCAGCTGATACGGTGCCCGCTGGGGAGATTCATGTCCGTCGTTCTGTACAGCAGGAGTCGAAT GGCTCGAAAACGTCTCCATAA |
| Gene | >Hirsu2|2052 ATGTCGTCGGCCACGCCTCCCTCCAGCGCCGCTGATCGCGGCGCCGCAAACCTCATCGCCGTCAGCTCCGTCTTG TGCGGACTGAGCCTGATGGCCGCGGGGCTGCGGTTTTGGGCCCGGCATCGTCAAAAGGTCTCGATCAAGGCAGAC GATTATTTCATACTGCCTGCCTTGGTGAGCCCGTCCATTCTCGTTTGACGCGGCAATGGCTCCAGTGCGCGCATC CGGCTGACTATGCGGCTACCGCTCCAGGCCGCCTTTATCGGCTGTTGCATTTGCCTTTGGTATAGTACGTCTTCG TGTCCACAACCTGTTACTGCTCGGATCCGGCCTCCTTTGTCTGCTGGGCCGCTAATACTCTGACGAAGCCATTAG TTTGAAGAGGCTGGGCTATCTCATGACCGACTTGACGAAGCAGTACATTGCAGAAACGCAGAAGCCATACGCCAG AGTGAGCGAGCACGATCCTTGACTGCTTCCCGTGGCAATCTTTTCCATCTCGCCTAGGCTATCGGAGAACTGACC TTCAAGTTGTTCAAGACTCAGATGGGGTTGACGCTCCTGTCCATCATCTCCCTCGGCTGCACCAAGGCCAGCATC CTCTTCTTCTACCAACGCATCTTTTGTGTGTCGAGTCGGAAGGCGGTCCTTAACGTCTTTATCACCGCGAGCATC GTCCTGGTCATAGCTTGGATGGTTGCTTTTGAAATATTCACCGCCTTCCAATGTCGCCTCCATTTCAACGCCATC TGGGATGGCACCCAGCTCAAATATTGCGATCTGTCCTACCCAGCAATGGAGGGGCTGGCCATTTCAGACTTTTTG CTCGATGTCTGGGTTCTGGCGCTTCCCATCTATCCGGTGCGTTCACCACCACCCCCTAAGCCCCAACCCCCCTTT ACTACCTACATAGCTTCGATGATGATAGTTGATCGACGTGGAGACTGACAACCTTTCAAGATCATGAAGCTTCAT ACCACCAAGTCTCGGAGGTTTGCCATTGCAGCCGTCTTTCTCCTAGCCTGCATGTACGTCTCTGCCTTGACCGCA AATGCCACTCTCTCCACGACTTTTATTCCTCGTTACCTTGGTCAACGTCCGGCTGTTGACATAGCATACAGCGGA GTTGCCTCCTCCATCGCGCGGATGGTTGAGGTTATCAAGATCGTGCAAAGTAAATGCCTGCCCCCTTTCCGCCTT CATTCGTCTGAGCGCTAATCCAATGAACAACAGCTGGCCAGAAAGCCATTCACACTACGCGCGATCCAATGGGTA CGTTTGTCCGCCCATTCCTGCGTGGTGGAGACAGTCGCTGACCCGAAGGGATTCCCCCTTACACAGAGACTCAAT CCCGGATCATGTTCTACTGGATACTTGAAATGGGCATCGGTTTGGTTGCCGTGAACCTGCCCTCCATCTGGATGG TCTTTGCGTCCGTTGCTCCCGAGGCGATTCTTCGCAGCATCCGCAGCGTTGTGTCGCTCGCCTCCATTGGATCCA ATGGCTCCAAGCGATCGCGTGAGCGTCACGCTGAGCACTCCAAGTTCAACAAGTCGTCGTCTTCCATTGCTCCCA TCACGAGCTCGACGGCAGACATCGAGGCGTACGCGATGGGCAGAAGAGAGGACTCAGCTGATACGGTGCCCGCTG GGGAGATTCATGTCCGTCGTTCTGTACAGCAGGAGTCGAATGGCTCGAAAACGTCTCCATAA |