Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2043
Gene name
LocationContig_1477:965..1438
Strand-
Gene length (bp)473
Transcript length (bp)219
Coding sequence length (bp)219
Protein length (aa) 73

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12907 zf-met2 Zinc-binding 1.5E-16 35 70
PF04419 4F5 4F5 protein related disordered region 2.6E-07 1 32

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O64818|Y2309_ARATH Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1 2 69 8.0E-10

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5277 0.5331 0.1904 0.25 0.129 0.0122 0.0448 0.009 0.0459 0.0003

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6052
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis map64 (Brazil) OphauB2|4415
Ophiocordyceps camponoti-floridani Ophcf2|02247
Ophiocordyceps camponoti-rufipedis Ophun1|4730
Ophiocordyceps subramaniannii Hirsu2|2043 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2043
MGNGAKAQQKRERNQKDGKTAKSQLKENEKAMSIQCQVCKATFLQTTKAPALLEHASNKHNKGLADCFPSKA*
Coding >Hirsu2|2043
ATGGGCAACGGAGCCAAGGCACAGCAGAAGCGCGAGCGCAACCAGAAGGACGGAAAGACGGCCAAGTCGCAACTC
AAGGAGAACGAGAAGGCCATGAGCATCCAGTGCCAAGTCTGCAAGGCCACCTTCCTCCAGACCACCAAGGCCCCT
GCCCTCCTCGAACATGCGTCGAATAAGCACAACAAAGGCCTAGCCGACTGCTTTCCCAGCAAGGCCTGA
Transcript >Hirsu2|2043
ATGGGCAACGGAGCCAAGGCACAGCAGAAGCGCGAGCGCAACCAGAAGGACGGAAAGACGGCCAAGTCGCAACTC
AAGGAGAACGAGAAGGCCATGAGCATCCAGTGCCAAGTCTGCAAGGCCACCTTCCTCCAGACCACCAAGGCCCCT
GCCCTCCTCGAACATGCGTCGAATAAGCACAACAAAGGCCTAGCCGACTGCTTTCCCAGCAAGGCCTGA
Gene >Hirsu2|2043
ATGGGCAACGTAGGGACCGTTCCCAACCCCTGTTTTTTTTTTTTTACTTGTCTGCCGTGAATAGACCCGGCTGAC
CTGCTGGGAAAAACTCAACGCGATGGAATGCCTAGGGAGCCAAGGCACAGCAGAAGCGCGAGCGCAACCAGAAGG
ACGGAAAGACGGCCAAGTCGCAACTCAAGGAGGTACGTTCTGCAGACCCCACCAATGCGCCTCTACCGTCCGTTT
GGTGTTGACCGGCCGCGGCTTCGGTATAGAACGAGAAGGCCATGAGCATCCAGTGCCAAGTCTGCAAGGCCACCT
TCCTCCAGACCACCAAGGCCCCTGCGTGCGTGACGCCCTTCCATCTCCCCTCACACCCCCCCTGGCATCTGCTGA
CATGCCCCCGCGTCCTGTCTCTCGTCGATAGCCTCCTCGAACATGCGTCGAATAAGCACAACAAAGGCCTAGCCG
ACTGCTTTCCCAGCAAGGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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