© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2042 |
| Gene name | |
| Location | Contig_1477:108..648 |
| Strand | + |
| Gene length (bp) | 540 |
| Transcript length (bp) | 540 |
| Coding sequence length (bp) | 540 |
| Protein length (aa) | 180 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03171 | 2OG-FeII_Oxy | 2OG-Fe(II) oxygenase superfamily | 9.1E-08 | 4 | 73 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9LHN8|F6H1_ARATH | Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 | 14 | 97 | 2.0E-07 |
| sp|F4IY03|DIOX1_ARATH | Probable 2-oxoglutarate-dependent dioxygenase At3g49630 OS=Arabidopsis thaliana GN=At3g49630 PE=3 SV=1 | 2 | 86 | 2.0E-07 |
| sp|Q9M2C4|ACCH8_ARATH | 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 | 14 | 73 | 3.0E-07 |
| sp|Q84MB6|DIOX2_ARATH | Probable 2-oxoglutarate-dependent dioxygenase At3g49630 OS=Arabidopsis thaliana GN=At3g50210 PE=2 SV=1 | 2 | 86 | 5.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Peroxisome | Peroxisomal targeting signal | 0.4147 | 0.2118 | 0.1805 | 0.0597 | 0.4143 | 0.1685 | 0.1486 | 0.1899 | 0.1056 | 0.8234 |
| Orthofinder run ID | 4 |
| Orthogroup | 399 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2042 MLTSFLLQATPHRGLQVQNVAGAWVDCPPVAGTLVVAVGQGLEALTRGVCVATTHRVLSPPAGAGPRFSIPFFQG VRFDAEFDELEAVGVGPVPDAVRAQRRAVVERYGGRVDDVEFTFHRGAVAKTLGEATLRNRVKSHPDVGERWYPD ILRSVREEQARAATTSSEAGRPTSAVEAR* |
| Coding | >Hirsu2|2042 ATGCTGACCAGCTTCCTGCTGCAGGCGACGCCGCACCGCGGGCTGCAGGTGCAGAACGTGGCGGGCGCGTGGGTC GACTGCCCGCCCGTGGCCGGCACGCTCGTCGTCGCCGTCGGCCAGGGGCTCGAGGCGCTGACGCGCGGCGTGTGC GTCGCGACGACGCACCGCGTGCTGTCGCCGCCGGCCGGCGCCGGGCCGCGCTTCTCCATCCCCTTCTTCCAGGGC GTCCGCTTCGACGCCGAGTTCGACGAGCTCGAGGCCGTCGGCGTCGGGCCCGTCCCCGACGCCGTCCGCGCCCAG CGCAGGGCCGTCGTCGAGCGCTACGGCGGCCGCGTCGACGACGTCGAGTTCACCTTCCACCGCGGCGCCGTCGCC AAGACGCTCGGCGAGGCCACCCTGCGCAACAGGGTCAAGAGCCATCCGGACGTGGGCGAGCGCTGGTACCCGGAC ATCCTCCGGTCCGTCCGCGAGGAGCAGGCGCGGGCCGCGACGACGTCATCGGAGGCTGGACGGCCGACGTCAGCG GTGGAAGCCCGTTGA |
| Transcript | >Hirsu2|2042 ATGCTGACCAGCTTCCTGCTGCAGGCGACGCCGCACCGCGGGCTGCAGGTGCAGAACGTGGCGGGCGCGTGGGTC GACTGCCCGCCCGTGGCCGGCACGCTCGTCGTCGCCGTCGGCCAGGGGCTCGAGGCGCTGACGCGCGGCGTGTGC GTCGCGACGACGCACCGCGTGCTGTCGCCGCCGGCCGGCGCCGGGCCGCGCTTCTCCATCCCCTTCTTCCAGGGC GTCCGCTTCGACGCCGAGTTCGACGAGCTCGAGGCCGTCGGCGTCGGGCCCGTCCCCGACGCCGTCCGCGCCCAG CGCAGGGCCGTCGTCGAGCGCTACGGCGGCCGCGTCGACGACGTCGAGTTCACCTTCCACCGCGGCGCCGTCGCC AAGACGCTCGGCGAGGCCACCCTGCGCAACAGGGTCAAGAGCCATCCGGACGTGGGCGAGCGCTGGTACCCGGAC ATCCTCCGGTCCGTCCGCGAGGAGCAGGCGCGGGCCGCGACGACGTCATCGGAGGCTGGACGGCCGACGTCAGCG GTGGAAGCCCGTTGA |
| Gene | >Hirsu2|2042 ATGCTGACCAGCTTCCTGCTGCAGGCGACGCCGCACCGCGGGCTGCAGGTGCAGAACGTGGCGGGCGCGTGGGTC GACTGCCCGCCCGTGGCCGGCACGCTCGTCGTCGCCGTCGGCCAGGGGCTCGAGGCGCTGACGCGCGGCGTGTGC GTCGCGACGACGCACCGCGTGCTGTCGCCGCCGGCCGGCGCCGGGCCGCGCTTCTCCATCCCCTTCTTCCAGGGC GTCCGCTTCGACGCCGAGTTCGACGAGCTCGAGGCCGTCGGCGTCGGGCCCGTCCCCGACGCCGTCCGCGCCCAG CGCAGGGCCGTCGTCGAGCGCTACGGCGGCCGCGTCGACGACGTCGAGTTCACCTTCCACCGCGGCGCCGTCGCC AAGACGCTCGGCGAGGCCACCCTGCGCAACAGGGTCAAGAGCCATCCGGACGTGGGCGAGCGCTGGTACCCGGAC ATCCTCCGGTCCGTCCGCGAGGAGCAGGCGCGGGCCGCGACGACGTCATCGGAGGCTGGACGGCCGACGTCAGCG GTGGAAGCCCGTTGA |