© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2034 |
| Gene name | |
| Location | Contig_1472:4891..5394 |
| Strand | + |
| Gene length (bp) | 503 |
| Transcript length (bp) | 297 |
| Coding sequence length (bp) | 297 |
| Protein length (aa) | 99 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Transmembrane domain|Mitochondrial transit peptide | 0.0836 | 0.1151 | 0.0162 | 0.0567 | 0.9172 | 0.0435 | 0.1739 | 0.067 | 0.0399 | 0.0254 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 48 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 6051 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2034 MGGGKKIPYPKHVWSPSGGWYAQPANWKANTAIAGAVMVGIVAVLWKFSAERETWARKPEPGEWYPSRNWSRQLI EWDNEDRLKAERMKAEQSKVVKE* |
| Coding | >Hirsu2|2034 ATGGGCGGCGGTAAAAAGATCCCATACCCAAAGCATGTGTGGTCGCCGTCAGGTGGCTGGTACGCGCAGCCTGCC AACTGGAAGGCAAATACCGCCATAGCTGGCGCCGTCATGGTTGGGATCGTTGCCGTTCTCTGGAAGTTCAGTGCC GAGCGGGAGACTTGGGCTCGGAAGCCCGAGCCAGGGGAGTGGTACCCCAGCAGAAATTGGTCGAGGCAATTGATC GAATGGGACAATGAAGACCGGTTAAAGGCGGAACGGATGAAGGCGGAGCAATCCAAAGTTGTTAAGGAGTGA |
| Transcript | >Hirsu2|2034 ATGGGCGGCGGTAAAAAGATCCCATACCCAAAGCATGTGTGGTCGCCGTCAGGTGGCTGGTACGCGCAGCCTGCC AACTGGAAGGCAAATACCGCCATAGCTGGCGCCGTCATGGTTGGGATCGTTGCCGTTCTCTGGAAGTTCAGTGCC GAGCGGGAGACTTGGGCTCGGAAGCCCGAGCCAGGGGAGTGGTACCCCAGCAGAAATTGGTCGAGGCAATTGATC GAATGGGACAATGAAGACCGGTTAAAGGCGGAACGGATGAAGGCGGAGCAATCCAAAGTTGTTAAGGAGTGA |
| Gene | >Hirsu2|2034 ATGGTGAGCCGATTAAATTCCAAGAAGCGCTACAAGAAGTAATCACTGACGGCCATGTAGGGCGGCGGTAAAAAG ATCCCGTAAGTCTCATGCGACAGCCTGGCCACCTTTGACTCCTTCATCATCACGTCCTCATTGCGTCGTTTGAAG ATACCCAAAGCATGTGTGGTCGCCGTCAGGTGGCTGGTACGCGCAGCCTGCCAACTGGAAGGCAAATACCGCCAT AGCTGGCGCCGTCATGGTTGGGATCGTTGCCGTTCTCTGGAAGTTCAGTGCCGAGCGGGAGACTTGGGCTCGGAA GCCCGAGCCAGGGGAGTGGTACCCCAGCAGAAAGTATGTAGCTCTTCGATTCAAATCCACTCACAAATCCCTCTC GTTCCCTCTCGGCCTCATTTTCTGACATGAAACGCAGTTGGTCGAGGCAATTGATCGAATGGGACAATGAAGACC GGTTAAAGGCGGAACGGATGAAGGCGGAGCAATCCAAAGTTGTTAAGGAGTGA |