Protein ID | Hirsu2|200 |
Gene name | |
Location | Contig_1033:7153..8502 |
Strand | - |
Gene length (bp) | 1349 |
Transcript length (bp) | 1083 |
Coding sequence length (bp) | 1083 |
Protein length (aa) | 361 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13805 | Pil1 | Eisosome component PIL1 | 3.9E-125 | 1 | 263 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P53252|PIL1_YEAST | Sphingolipid long chain base-responsive protein PIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIL1 PE=1 SV=1 | 1 | 276 | 5.0E-141 |
sp|Q12230|LSP1_YEAST | Sphingolipid long chain base-responsive protein LSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSP1 PE=1 SV=1 | 1 | 274 | 1.0E-130 |
sp|O74960|PIL1_SCHPO | Probable sphingolipid long chain base-responsive protein pil1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pil1 PE=1 SV=1 | 1 | 270 | 3.0E-115 |
sp|O14128|PIL2_SCHPO | Probable sphingolipid long chain base-responsive protein pil2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pil2 PE=3 SV=1 | 4 | 262 | 1.0E-84 |
sp|O94756|MEU14_SCHPO | Meiotic expression up-regulated protein 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=meu14 PE=4 SV=1 | 54 | 255 | 1.0E-30 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6051 | 0.3593 | 0.1208 | 0.1581 | 0.1662 | 0.0034 | 0.1638 | 0.4087 | 0.2663 | 0.0824 |
Orthofinder run ID | 4 |
Orthogroup | 1907 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|200 MHRTYSMRASRAPTASQIETPPPPPSSTKSGRFFGKGNIGHALRRNTGGAFGPDLAKKLSQLVKMEKNVMRSLEL AAKERMEVGQQLSLWGEGGDEDVSDVTDKLGVLMYEIGELEDHYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKI TDQIAQLKYKEPNSPKIVVLEQELVRAEAESLVAEAQLSNITREKFKAAYTYKFNSLREHCEKVAIIAGYGKHLL DLIDDTPVTPGETRHAYDGYEASKAIIQDCENALTNWVHANAAVSSKLSTRSRTLSQRRRNNIRARNEGGLDLSQ QDTPLNDSSSWVAARERDLESEEEDEEEELEEENRRSVLEAAEGSLNGESRGRAKEAVVA* |
Coding | >Hirsu2|200 ATGCATCGCACCTATTCTATGCGCGCCTCCCGCGCGCCCACGGCCTCCCAGATCGAGACCCCGCCGCCTCCGCCC TCGTCCACCAAGTCCGGCCGCTTCTTCGGCAAGGGGAACATCGGTCATGCCCTGCGGCGCAACACCGGCGGCGCC TTCGGGCCCGACCTGGCCAAGAAGCTGTCCCAGCTCGTCAAGATGGAGAAGAACGTGATGCGGAGCTTGGAGCTG GCTGCCAAGGAGCGCATGGAGGTCGGCCAACAACTGTCCCTCTGGGGTGAGGGAGGCGACGAGGATGTTTCGGAC GTCACCGACAAGCTCGGTGTCCTCATGTACGAAATCGGCGAGCTCGAGGACCACTACGTCGACCGATACGATCAA TACCGCGTCACCATGAAGAGCATCCGGAACATCGAGGCCTCCGTGCAACCGAGCCGCGACCGCAAGCAGAAGATC ACCGATCAGATCGCCCAGCTCAAGTACAAGGAGCCCAACTCGCCCAAGATCGTCGTTCTCGAGCAGGAGCTCGTC CGTGCTGAGGCCGAGTCGCTCGTCGCCGAGGCCCAGCTGTCCAACATCACGCGCGAGAAGTTCAAGGCTGCCTAC ACCTACAAGTTCAACTCCCTCCGCGAGCACTGCGAGAAGGTGGCCATCATCGCCGGCTACGGCAAACACCTCCTC GACCTCATCGACGACACCCCCGTCACCCCCGGCGAGACGCGACACGCCTACGACGGCTACGAGGCCAGCAAGGCC ATCATCCAGGACTGCGAAAACGCCCTGACCAACTGGGTCCACGCCAACGCCGCCGTCTCCTCCAAGCTCTCCACC CGCTCGCGAACCCTGTCTCAGCGACGCCGGAACAACATCCGGGCGAGGAACGAGGGCGGCCTCGACCTGTCTCAG CAGGACACTCCCCTCAACGACAGCAGCTCTTGGGTCGCCGCCCGGGAACGTGACCTCGAGAGCGAGGAGGAGGAC GAGGAGGAGGAGCTGGAAGAGGAGAACCGCCGCTCCGTCCTCGAGGCCGCCGAGGGTAGCCTGAACGGCGAGAGC CGGGGGCGGGCCAAGGAGGCCGTTGTCGCATAA |
Transcript | >Hirsu2|200 ATGCATCGCACCTATTCTATGCGCGCCTCCCGCGCGCCCACGGCCTCCCAGATCGAGACCCCGCCGCCTCCGCCC TCGTCCACCAAGTCCGGCCGCTTCTTCGGCAAGGGGAACATCGGTCATGCCCTGCGGCGCAACACCGGCGGCGCC TTCGGGCCCGACCTGGCCAAGAAGCTGTCCCAGCTCGTCAAGATGGAGAAGAACGTGATGCGGAGCTTGGAGCTG GCTGCCAAGGAGCGCATGGAGGTCGGCCAACAACTGTCCCTCTGGGGTGAGGGAGGCGACGAGGATGTTTCGGAC GTCACCGACAAGCTCGGTGTCCTCATGTACGAAATCGGCGAGCTCGAGGACCACTACGTCGACCGATACGATCAA TACCGCGTCACCATGAAGAGCATCCGGAACATCGAGGCCTCCGTGCAACCGAGCCGCGACCGCAAGCAGAAGATC ACCGATCAGATCGCCCAGCTCAAGTACAAGGAGCCCAACTCGCCCAAGATCGTCGTTCTCGAGCAGGAGCTCGTC CGTGCTGAGGCCGAGTCGCTCGTCGCCGAGGCCCAGCTGTCCAACATCACGCGCGAGAAGTTCAAGGCTGCCTAC ACCTACAAGTTCAACTCCCTCCGCGAGCACTGCGAGAAGGTGGCCATCATCGCCGGCTACGGCAAACACCTCCTC GACCTCATCGACGACACCCCCGTCACCCCCGGCGAGACGCGACACGCCTACGACGGCTACGAGGCCAGCAAGGCC ATCATCCAGGACTGCGAAAACGCCCTGACCAACTGGGTCCACGCCAACGCCGCCGTCTCCTCCAAGCTCTCCACC CGCTCGCGAACCCTGTCTCAGCGACGCCGGAACAACATCCGGGCGAGGAACGAGGGCGGCCTCGACCTGTCTCAG CAGGACACTCCCCTCAACGACAGCAGCTCTTGGGTCGCCGCCCGGGAACGTGACCTCGAGAGCGAGGAGGAGGAC GAGGAGGAGGAGCTGGAAGAGGAGAACCGCCGCTCCGTCCTCGAGGCCGCCGAGGGTAGCCTGAACGGCGAGAGC CGGGGGCGGGCCAAGGAGGCCGTTGTCGCATAA |
Gene | >Hirsu2|200 ATGCATCGCACCTATTCTATGCGCGCCTCCCGCGCGCCCACGGCCTCCCAGATCGAGGTGAGCCGCCGCAACTCC GCCCACCCGCCGCCGCGTGCGACGACGCTGACGTGCTGAAACTTGTCGCCAGACCCCGCCGCCTCCGCCCTCGTC CACCAAGTCCGGCCGCTTCTTCGGCAAGGGGAACATCGGTGAGTGCCGTCACGAAGCCTAGGGAGAAAGCCTTGG AGGACCATTGAGCAGCTCATCCCTCTCTCTCCGTCAGGTCATGCCCTGCGGCGCAACACCGGCGGCGCCTTCGGG CCCGACCTGGCCAAGAAGCTGTCCCAGCTCGTCAAGATGGAGAAGAACGTGATGCGGAGCTTGGAGCTGGCTGCC AAGGAGCGCATGGAGGTCGGCGTACGTGCCTTCGTACCCCCCCAACCTCGTCTCGCTCTCTACACCGGCTGACCC TCTCCGACAGCAACAACTGTCCCTCTGGGGTGAGGGAGGCGACGAGGATGTTTCGGACGTCACCGACAAGCTCGG TGTCCTCATGTACGAAATCGGCGAGCTCGAGGACCACTACGTCGACCGATACGATCAATACCGCGTCACCATGAA GAGCATCCGGAACATCGAGGCCTCCGTGCAACCGAGCCGCGACCGTAAGGACCAGCCCGCCCGCCCTTGGCGCAC TCGTACGCTGACGAGAGTGTTCGACAGGCAAGCAGAAGATCACCGATCAGATCGCCCAGCTCAAGTACAAGGAGC CCAACTCGCCCAAGATCGTCGTTCTCGAGCAGGAGCTCGTCCGTGCTGAGGCCGAGTCGCTCGTCGCCGAGGCCC AGCTGTCCAACATCACGCGCGAGAAGTTCAAGGCTGCCTACACCTACAAGTTCAACTCCCTCCGCGAGCACTGCG AGAAGGTGGCCATCATCGCCGGCTACGGCAAACACCTCCTCGACCTCATCGACGACACCCCCGTCACCCCCGGCG AGACGCGACACGCCTACGACGGCTACGAGGCCAGCAAGGCCATCATCCAGGACTGCGAAAACGCCCTGACCAACT GGGTCCACGCCAACGCCGCCGTCTCCTCCAAGCTCTCCACCCGCTCGCGAACCCTGTCTCAGCGACGCCGGAACA ACATCCGGGCGAGGAACGAGGGCGGCCTCGACCTGTCTCAGCAGGACACTCCCCTCAACGACAGCAGCTCTTGGG TCGCCGCCCGGGAACGTGACCTCGAGAGCGAGGAGGAGGACGAGGAGGAGGAGCTGGAAGAGGAGAACCGCCGCT CCGTCCTCGAGGCCGCCGAGGGTAGCCTGAACGGCGAGAGCCGGGGGCGGGCCAAGGAGGCCGTTGTCGCATAA |