Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|199
Gene name
LocationContig_1033:6388..6788
Strand+
Gene length (bp)400
Transcript length (bp)324
Coding sequence length (bp)324
Protein length (aa) 108

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 2.3E-11 9 92

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 4 94 2.0E-15
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 4 94 3.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 4 94 3.0E-15
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 4 95 2.0E-14
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 6 94 4.0E-14
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 4 94 2.0E-15
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 4 94 3.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 4 94 3.0E-15
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 4 95 2.0E-14
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 6 94 4.0E-14
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 6 95 6.0E-14
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 14 94 2.0E-09
sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B' OS=Monodelphis domestica GN=SNRPB PE=2 SV=1 14 94 5.0E-07
sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 14 94 6.0E-07
sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 12 94 6.0E-07
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2 14 94 6.0E-07
sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1 14 94 6.0E-07
sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus GN=SNRPB PE=2 SV=1 14 94 7.0E-07
sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1 14 94 1.0E-06
sp|O43080|NAA38_SCHPO N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=naa38 PE=3 SV=2 4 91 2.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5605 0.8177 0.058 0.0352 0.1701 0.0012 0.029 0.1338 0.0578 0.0076

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1902
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2759
Ophiocordyceps australis map64 (Brazil) OphauB2|4422
Ophiocordyceps camponoti-floridani Ophcf2|03375
Ophiocordyceps camponoti-rufipedis Ophun1|579
Ophiocordyceps kimflemingae Ophio5|797
Ophiocordyceps subramaniannii Hirsu2|199 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|199
MNREEAQAYLESLLNKNLRIITTDGRLFWGSFKCTDADRNVVLAHTYEYRQPPPAAIQRHLEDAERETVSVDMTS
RYLGLVVVPGHHVVSMHLEQFASQLKKGAVQD*
Coding >Hirsu2|199
ATGAATCGAGAAGAGGCGCAAGCCTATCTCGAGTCGCTGCTGAATAAGAACCTCCGCATCATCACCACCGACGGC
CGCCTCTTTTGGGGCTCGTTCAAATGCACCGACGCCGACAGAAACGTTGTTCTAGCACATACGTATGAGTACCGA
CAGCCGCCCCCCGCGGCCATCCAGCGCCACCTGGAGGACGCAGAGCGCGAGACGGTCTCAGTCGATATGACGTCG
CGATATCTTGGTCTGGTGGTGGTGCCGGGCCACCACGTCGTCAGCATGCATTTGGAGCAGTTCGCGAGCCAGCTC
AAGAAGGGTGCGGTGCAAGATTGA
Transcript >Hirsu2|199
ATGAATCGAGAAGAGGCGCAAGCCTATCTCGAGTCGCTGCTGAATAAGAACCTCCGCATCATCACCACCGACGGC
CGCCTCTTTTGGGGCTCGTTCAAATGCACCGACGCCGACAGAAACGTTGTTCTAGCACATACGTATGAGTACCGA
CAGCCGCCCCCCGCGGCCATCCAGCGCCACCTGGAGGACGCAGAGCGCGAGACGGTCTCAGTCGATATGACGTCG
CGATATCTTGGTCTGGTGGTGGTGCCGGGCCACCACGTCGTCAGCATGCATTTGGAGCAGTTCGCGAGCCAGCTC
AAGAAGGGTGCGGTGCAAGATTGA
Gene >Hirsu2|199
ATGAATCGAGAAGAGGCGCAAGCCTATCTCGAGTCGCTGCTGAATAAGAACCTCCGCATCATCACCACCGACGGC
CGCCTCTTTTGGGGCTCGTTCAAATGCACCGACGCCGTTCGTACCCGCCCCTCCCCCGGAGACCTCGGTCCTGAG
CCCGGTCTGCCGCTAACGAATGCCTGTTCCTGTGCAGGACAGAAACGTTGTTCTAGCACATACGTATGAGTACCG
ACAGCCGCCCCCCGCGGCCATCCAGCGCCACCTGGAGGACGCAGAGCGCGAGACGGTCTCAGTCGATATGACGTC
GCGATATCTTGGTCTGGTGGTGGTGCCGGGCCACCACGTCGTCAGCATGCATTTGGAGCAGTTCGCGAGCCAGCT
CAAGAAGGGTGCGGTGCAAGATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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