© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1963 |
| Gene name | |
| Location | Contig_1450:3291..4190 |
| Strand | - |
| Gene length (bp) | 899 |
| Transcript length (bp) | 834 |
| Coding sequence length (bp) | 834 |
| Protein length (aa) | 278 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 8 | 68 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87216|VIPI_SCHPO | Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1 | 7 | 258 | 2.0E-46 |
| sp|Q9LFD5|BPA1_ARATH | Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1 | 6 | 175 | 2.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6192 | 0.1467 | 0.134 | 0.1227 | 0.5889 | 0.0091 | 0.5226 | 0.154 | 0.3595 | 0.101 |
| Orthofinder run ID | 4 |
| Orthogroup | 1893 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1963 MATKSTVHVKNIAAATSDTEVKDFFSFCGKIADFQISTAGDTKAADVSFEKETAMKTALLLNNTQLGPNHISVTG GAGGDADDDGAPYTKNVDRDSDELTQEEKPRTRILAEYLAHGYVVGDAAIKRAIDLDSKHGVSNRFLATLQNLDQ KLHASDRARATDQSYGLTQRANTFFTGINSYFEKASNTPTGKKIVKFYEDGSRQVQDIHAEARRLADLKTNEHGG SAYKASGLERVFGKEKDKPQDATATAPTTESKTAASTTTTESAPAVKAPETL* |
| Coding | >Hirsu2|1963 ATGGCCACCAAATCCACCGTTCACGTCAAGAACATTGCCGCCGCGACGAGCGACACCGAGGTCAAGGACTTCTTT AGCTTCTGCGGCAAGATCGCCGACTTCCAAATCTCGACGGCCGGCGACACCAAGGCGGCCGATGTCTCGTTCGAA AAGGAGACGGCCATGAAGACGGCCCTGCTTCTCAACAACACGCAGCTCGGCCCCAACCACATCTCGGTCACGGGC GGCGCCGGCGGCGACGCCGACGACGACGGCGCGCCCTACACCAAGAACGTCGACCGCGACTCGGACGAGCTGACG CAGGAGGAGAAGCCGCGGACGCGGATCCTGGCCGAGTACCTGGCCCACGGCTACGTCGTCGGCGACGCCGCCATC AAGCGCGCCATCGACCTCGACTCCAAGCACGGCGTCTCCAACCGCTTCCTCGCCACCCTGCAGAACCTGGACCAG AAGCTGCACGCCTCGGACCGCGCCCGCGCCACCGACCAGAGCTACGGCCTCACCCAGCGCGCAAACACCTTCTTC ACCGGCATCAACTCGTACTTTGAAAAGGCCAGCAACACGCCGACGGGCAAGAAGATTGTCAAGTTCTACGAGGAC GGCTCGCGCCAGGTCCAGGACATCCACGCCGAGGCCCGCCGCCTCGCCGACCTCAAGACGAACGAGCACGGCGGC AGCGCCTACAAGGCCTCGGGCCTCGAGCGCGTCTTCGGCAAGGAGAAGGACAAGCCCCAAGACGCGACCGCCACC GCCCCGACCACGGAGTCCAAGACGGCCGCTAGCACCACCACGACGGAATCCGCCCCCGCCGTCAAGGCCCCCGAG ACGCTGTAG |
| Transcript | >Hirsu2|1963 ATGGCCACCAAATCCACCGTTCACGTCAAGAACATTGCCGCCGCGACGAGCGACACCGAGGTCAAGGACTTCTTT AGCTTCTGCGGCAAGATCGCCGACTTCCAAATCTCGACGGCCGGCGACACCAAGGCGGCCGATGTCTCGTTCGAA AAGGAGACGGCCATGAAGACGGCCCTGCTTCTCAACAACACGCAGCTCGGCCCCAACCACATCTCGGTCACGGGC GGCGCCGGCGGCGACGCCGACGACGACGGCGCGCCCTACACCAAGAACGTCGACCGCGACTCGGACGAGCTGACG CAGGAGGAGAAGCCGCGGACGCGGATCCTGGCCGAGTACCTGGCCCACGGCTACGTCGTCGGCGACGCCGCCATC AAGCGCGCCATCGACCTCGACTCCAAGCACGGCGTCTCCAACCGCTTCCTCGCCACCCTGCAGAACCTGGACCAG AAGCTGCACGCCTCGGACCGCGCCCGCGCCACCGACCAGAGCTACGGCCTCACCCAGCGCGCAAACACCTTCTTC ACCGGCATCAACTCGTACTTTGAAAAGGCCAGCAACACGCCGACGGGCAAGAAGATTGTCAAGTTCTACGAGGAC GGCTCGCGCCAGGTCCAGGACATCCACGCCGAGGCCCGCCGCCTCGCCGACCTCAAGACGAACGAGCACGGCGGC AGCGCCTACAAGGCCTCGGGCCTCGAGCGCGTCTTCGGCAAGGAGAAGGACAAGCCCCAAGACGCGACCGCCACC GCCCCGACCACGGAGTCCAAGACGGCCGCTAGCACCACCACGACGGAATCCGCCCCCGCCGTCAAGGCCCCCGAG ACGCTGTAG |
| Gene | >Hirsu2|1963 ATGGCCACCAAATCCACCGTTCACGTCAAGAACATTGCCGCCGCGACGAGCGACACCGAGGTCAAGGACTTCTTT AGCTTCTGGTGCGTCGTCCCCGGGCGAAGAAGGCGACGGCCGAGACGGACCGACTGACGAGGCAGCAACGCAGCG GCAAGATCGCCGACTTCCAAATCTCGACGGCCGGCGACACCAAGGCGGCCGATGTCTCGTTCGAAAAGGAGACGG CCATGAAGACGGCCCTGCTTCTCAACAACACGCAGCTCGGCCCCAACCACATCTCGGTCACGGGCGGCGCCGGCG GCGACGCCGACGACGACGGCGCGCCCTACACCAAGAACGTCGACCGCGACTCGGACGAGCTGACGCAGGAGGAGA AGCCGCGGACGCGGATCCTGGCCGAGTACCTGGCCCACGGCTACGTCGTCGGCGACGCCGCCATCAAGCGCGCCA TCGACCTCGACTCCAAGCACGGCGTCTCCAACCGCTTCCTCGCCACCCTGCAGAACCTGGACCAGAAGCTGCACG CCTCGGACCGCGCCCGCGCCACCGACCAGAGCTACGGCCTCACCCAGCGCGCAAACACCTTCTTCACCGGCATCA ACTCGTACTTTGAAAAGGCCAGCAACACGCCGACGGGCAAGAAGATTGTCAAGTTCTACGAGGACGGCTCGCGCC AGGTCCAGGACATCCACGCCGAGGCCCGCCGCCTCGCCGACCTCAAGACGAACGAGCACGGCGGCAGCGCCTACA AGGCCTCGGGCCTCGAGCGCGTCTTCGGCAAGGAGAAGGACAAGCCCCAAGACGCGACCGCCACCGCCCCGACCA CGGAGTCCAAGACGGCCGCTAGCACCACCACGACGGAATCCGCCCCCGCCGTCAAGGCCCCCGAGACGCTGTAG |