Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|196
Gene name
LocationContig_1033:354..1716
Strand-
Gene length (bp)1362
Transcript length (bp)891
Coding sequence length (bp)891
Protein length (aa) 297

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07500 TFIIS_M Transcription factor S-II (TFIIS), central domain 5.7E-28 136 242
PF01096 TFIIS_C Transcription factor S-II (TFIIS) 4.8E-18 257 294
PF08711 Med26 TFIIS helical bundle-like domain 1.9E-10 28 79

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1 1 296 1.0E-71
sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 1 296 2.0E-48
sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2 25 295 5.0E-39
sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1 25 295 2.0E-36
sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2 25 295 9.0E-36
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1 1 296 1.0E-71
sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 1 296 2.0E-48
sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2 25 295 5.0E-39
sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1 25 295 2.0E-36
sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2 25 295 9.0E-36
sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus GN=Tcea1 PE=1 SV=1 25 295 1.0E-35
sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1 24 295 5.0E-33
sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1 25 295 8.0E-33
sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus GN=Tcea2 PE=2 SV=2 25 295 2.0E-32
sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1 24 295 9.0E-32
sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3 30 295 5.0E-30
sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis elegans GN=T24H10.1 PE=3 SV=1 21 295 1.0E-29
sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1 1 295 2.0E-29
sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV=1 164 295 4.0E-27
sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens GN=TCEA3 PE=1 SV=2 133 295 4.0E-27
sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium discoideum GN=tcea1 PE=3 SV=1 28 295 3.0E-26
sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1 158 295 7.0E-26
sp|Q3US16|TEANC_MOUSE Transcription elongation factor A N-terminal and central domain-containing protein OS=Mus musculus GN=Tceanc PE=2 SV=1 56 293 8.0E-15
sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central domain-containing protein OS=Homo sapiens GN=TCEANC PE=1 SV=2 116 296 2.0E-12
sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central domain-containing protein OS=Macaca fascicularis GN=TCEANC PE=2 SV=1 137 296 2.0E-11
sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1 SV=1 261 294 1.0E-07
sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 258 294 3.0E-07
sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2 253 294 3.0E-07
sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147 PE=2 SV=1 204 293 5.0E-07
sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150 PE=2 SV=1 204 293 1.0E-06
sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1 258 294 1.0E-06
sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-152 PE=2 SV=1 204 293 1.0E-06
sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140 PE=2 SV=1 204 293 1.0E-06
sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=3 SV=1 255 293 2.0E-06
sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2 SV=1 204 293 3.0E-06
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GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0003676 nucleic acid binding Yes
GO:0005634 nucleus Yes
GO:0008270 zinc ion binding Yes
GO:0044238 primary metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0016070 RNA metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0005488 binding No
GO:0046872 metal ion binding No
GO:0008152 metabolic process No
GO:0043169 cation binding No
GO:0008150 biological_process No
GO:0044260 cellular macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0043226 organelle No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0090304 nucleic acid metabolic process No
GO:0043227 membrane-bounded organelle No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0018130 heterocycle biosynthetic process No
GO:0043167 ion binding No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0044424 intracellular part No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0043229 intracellular organelle No
GO:0006725 cellular aromatic compound metabolic process No
GO:0009058 biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0044464 cell part No
GO:1901576 organic substance biosynthetic process No
GO:0043231 intracellular membrane-bounded organelle No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046914 transition metal ion binding No
GO:0019438 aromatic compound biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 48 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Transcription factor TFIIS

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|196
MDQRELESRVKALTKSVAANEPPENAIKLLDLLKKDAAPTEEMLRATRAGVFVGKLRSNPNKEIARAASELVIKW
KKLVEQEKNSKLQKAKMGSPAPAAAALPPAPAAGSKRAFTGDPEKRKFDSDGVDIKRTDSNVRNQCIGLIYNGLA
FRSTDPPTDVIAKAVAVEQAVLDVFKGENAEYKKKIRSLFANLKNKSNKELGRRVMTGEIPADRFAVMTDEDLKS
DDQRKKDLELEKENMKKAQVPMAEKSISDSLECSRCKKKKVSYTQAQTRSADEPMTTFCECMNCGHRWKFS*
Coding >Hirsu2|196
ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC
GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGCAACTCGCGCCGGC
GTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCGAGCTCGTCATCAAGTGG
AAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGCCGGCGCCTGCCGCGGCC
GCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGAAGCGTAAGTTCGACAGC
GACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCATCTACAACGGCCTCGCC
TTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGGCCGTCCTCGACGTCTTC
AAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGAACAAGTCCAACAAGGAG
CTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCGACGAAGACCTCAAGAGC
GACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGGTGCCCATGGCCGAGAAG
AGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGCAGGCCCAGACGCGGAGC
GCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGTTCTCCTGA
Transcript >Hirsu2|196
ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC
GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGCAACTCGCGCCGGC
GTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCGAGCTCGTCATCAAGTGG
AAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGCCGGCGCCTGCCGCGGCC
GCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGAAGCGTAAGTTCGACAGC
GACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCATCTACAACGGCCTCGCC
TTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGGCCGTCCTCGACGTCTTC
AAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGAACAAGTCCAACAAGGAG
CTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCGACGAAGACCTCAAGAGC
GACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGGTGCCCATGGCCGAGAAG
AGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGCAGGCCCAGACGCGGAGC
GCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGTTCTCCTGA
Gene >Hirsu2|196
ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC
GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGTGAGTTTGGTCATG
ATGCGGCCGCGTCCCTTGTTTGCTTGCGGCTTTTTTTTTTCTTTCCGCGTCGCCTGCGCGCCTCCTCATCCTCCT
GTGTTTGTTTGCTCGCTGCTCGTCGACTAAGTTTTGTCGCTTCTCCCCATTTCTTCTTCTTTCTCTTTGCTTTTG
GAGTGTGCTCTGTCGCAAGAGCCGTCGAGTTGCATCGGAACACTGCTCATCTGGTGCGCGCCCAAGGGCCTCTTG
CTTTTCTGCCCCAGCACTCACAGCTCTGCTCGCCTCGCCTCGAAAATCTTGGCGACCTGAGTGCGAGGTGAAGAA
ACACCACAAGAAAAGGAAAGGGAAAAAAAAAAAAACTGAAGAGAAGACGCGCTGACAGTCTCTCTCCTGATTCTT
AGGCAACTCGCGCCGGCGTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCG
AGCTCGTCATCAAGTGGAAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGC
CGGCGCCTGCCGCGGCCGCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGA
AGCGTAAGTTCGACAGCGACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCA
TCTACAACGGCCTCGCCTTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGG
CCGTCCTCGACGTCTTCAAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGA
ACAAGTCCAACAAGGAGCTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCG
ACGAAGACCTCAAGAGCGACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGG
TGCCCATGGCCGAGAAGAGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGC
AGGCCCAGACGCGGAGCGCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGG
TACGTCTTGACCCTGGGCCTCTCGAGCGCCGTCCCCCACGCCCTGCTCGCTCCCGACGCTGACGCTCCGTCCTCG
CAGTTCTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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