© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|196 |
| Gene name | |
| Location | Contig_1033:354..1716 |
| Strand | - |
| Gene length (bp) | 1362 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 891 |
| Protein length (aa) | 297 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07500 | TFIIS_M | Transcription factor S-II (TFIIS), central domain | 4.5E-29 | 134 | 242 |
| PF01096 | TFIIS_C | Transcription factor S-II (TFIIS) | 4.2E-18 | 257 | 294 |
| PF08711 | Med26 | TFIIS helical bundle-like domain | 2.6E-10 | 28 | 79 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49373|TFS2_SCHPO | Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1 | 1 | 296 | 1.0E-71 |
| sp|P07273|TFS2_YEAST | Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 | 1 | 296 | 2.0E-48 |
| sp|P23193|TCEA1_HUMAN | Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2 | 25 | 295 | 5.0E-39 |
| sp|Q29RL9|TCEA1_BOVIN | Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1 | 25 | 295 | 2.0E-36 |
| sp|P10711|TCEA1_MOUSE | Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2 | 25 | 295 | 9.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49373|TFS2_SCHPO | Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1 | 1 | 296 | 1.0E-71 |
| sp|P07273|TFS2_YEAST | Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 | 1 | 296 | 2.0E-48 |
| sp|P23193|TCEA1_HUMAN | Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2 | 25 | 295 | 5.0E-39 |
| sp|Q29RL9|TCEA1_BOVIN | Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1 | 25 | 295 | 2.0E-36 |
| sp|P10711|TCEA1_MOUSE | Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2 | 25 | 295 | 9.0E-36 |
| sp|Q4KLL0|TCEA1_RAT | Transcription elongation factor A protein 1 OS=Rattus norvegicus GN=Tcea1 PE=1 SV=1 | 25 | 295 | 1.0E-35 |
| sp|Q15560|TCEA2_HUMAN | Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1 | 24 | 295 | 5.0E-33 |
| sp|Q63799|TCEA2_RAT | Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1 | 25 | 295 | 8.0E-33 |
| sp|Q9QVN7|TCEA2_MOUSE | Transcription elongation factor A protein 2 OS=Mus musculus GN=Tcea2 PE=2 SV=2 | 25 | 295 | 2.0E-32 |
| sp|Q148K0|TCEA2_BOVIN | Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1 | 24 | 295 | 9.0E-32 |
| sp|P23881|TCEA3_MOUSE | Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3 | 30 | 295 | 5.0E-30 |
| sp|P52652|TFS2_CAEEL | Putative transcription elongation factor S-II OS=Caenorhabditis elegans GN=T24H10.1 PE=3 SV=1 | 21 | 295 | 1.0E-29 |
| sp|Q2KI09|TCEA3_BOVIN | Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1 | 1 | 295 | 2.0E-29 |
| sp|P20232|TFS2_DROME | Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV=1 | 164 | 295 | 4.0E-27 |
| sp|O75764|TCEA3_HUMAN | Transcription elongation factor A protein 3 OS=Homo sapiens GN=TCEA3 PE=1 SV=2 | 133 | 295 | 4.0E-27 |
| sp|Q54YG9|TCEA1_DICDI | Transcription elongation factor A protein 1 OS=Dictyostelium discoideum GN=tcea1 PE=3 SV=1 | 28 | 295 | 3.0E-26 |
| sp|Q9ZVH8|RDO2_ARATH | Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1 | 158 | 295 | 7.0E-26 |
| sp|Q3US16|TEANC_MOUSE | Transcription elongation factor A N-terminal and central domain-containing protein OS=Mus musculus GN=Tceanc PE=2 SV=1 | 56 | 293 | 8.0E-15 |
| sp|Q8N8B7|TEANC_HUMAN | Transcription elongation factor A N-terminal and central domain-containing protein OS=Homo sapiens GN=TCEANC PE=1 SV=2 | 116 | 296 | 2.0E-12 |
| sp|Q9GMV6|TEANC_MACFA | Transcription elongation factor A N-terminal and central domain-containing protein OS=Macaca fascicularis GN=TCEANC PE=2 SV=1 | 137 | 296 | 2.0E-11 |
| sp|Q04307|RPC10_YEAST | DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1 SV=1 | 261 | 294 | 1.0E-07 |
| sp|Q9CQZ7|RPC10_MOUSE | DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 | 258 | 294 | 3.0E-07 |
| sp|Q9Y2Y1|RPC10_HUMAN | DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2 | 253 | 294 | 3.0E-07 |
| sp|P0C8F6|TFS2_ASFM2 | Transcription factor S-II-related protein OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147 PE=2 SV=1 | 204 | 293 | 5.0E-07 |
| sp|P0C8F8|TFS2_ASFWA | Transcription factor S-II-related protein OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150 PE=2 SV=1 | 204 | 293 | 1.0E-06 |
| sp|Q2M2S7|RPC10_BOVIN | DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1 | 258 | 294 | 1.0E-06 |
| sp|P0C8F7|TFS2_ASFP4 | Transcription factor S-II-related protein OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-152 PE=2 SV=1 | 204 | 293 | 1.0E-06 |
| sp|P27948|TFS2_ASFB7 | Transcription factor S-II-related protein OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140 PE=2 SV=1 | 204 | 293 | 1.0E-06 |
| sp|Q6GZP4|081R_FRG3G | Putative transcription elongation factor S-II-like protein 81R OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=3 SV=1 | 255 | 293 | 2.0E-06 |
| sp|P0C8F5|TFS2_ASFK5 | Transcription factor S-II-related protein OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2 SV=1 | 204 | 293 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Transcription factor TFIIS |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|196 MDQRELESRVKALTKSVAANEPPENAIKLLDLLKKDAAPTEEMLRATRAGVFVGKLRSNPNKEIARAASELVIKW KKLVEQEKNSKLQKAKMGSPAPAAAALPPAPAAGSKRAFTGDPEKRKFDSDGVDIKRTDSNVRNQCIGLIYNGLA FRSTDPPTDVIAKAVAVEQAVLDVFKGENAEYKKKIRSLFANLKNKSNKELGRRVMTGEIPADRFAVMTDEDLKS DDQRKKDLELEKENMKKAQVPMAEKSISDSLECSRCKKKKVSYTQAQTRSADEPMTTFCECMNCGHRWKFS* |
| Coding | >Hirsu2|196 ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGCAACTCGCGCCGGC GTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCGAGCTCGTCATCAAGTGG AAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGCCGGCGCCTGCCGCGGCC GCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGAAGCGTAAGTTCGACAGC GACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCATCTACAACGGCCTCGCC TTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGGCCGTCCTCGACGTCTTC AAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGAACAAGTCCAACAAGGAG CTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCGACGAAGACCTCAAGAGC GACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGGTGCCCATGGCCGAGAAG AGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGCAGGCCCAGACGCGGAGC GCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGTTCTCCTGA |
| Transcript | >Hirsu2|196 ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGCAACTCGCGCCGGC GTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCGAGCTCGTCATCAAGTGG AAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGCCGGCGCCTGCCGCGGCC GCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGAAGCGTAAGTTCGACAGC GACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCATCTACAACGGCCTCGCC TTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGGCCGTCCTCGACGTCTTC AAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGAACAAGTCCAACAAGGAG CTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCGACGAAGACCTCAAGAGC GACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGGTGCCCATGGCCGAGAAG AGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGCAGGCCCAGACGCGGAGC GCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGTTCTCCTGA |
| Gene | >Hirsu2|196 ATGGACCAACGGGAGCTCGAGTCGCGCGTCAAGGCGCTGACCAAGTCGGTCGCTGCAAACGAGCCGCCCGAGAAC GCCATCAAGCTGCTCGACCTGCTCAAGAAGGATGCTGCTCCCACCGAGGAGATGCTGCGGGTGAGTTTGGTCATG ATGCGGCCGCGTCCCTTGTTTGCTTGCGGCTTTTTTTTTTCTTTCCGCGTCGCCTGCGCGCCTCCTCATCCTCCT GTGTTTGTTTGCTCGCTGCTCGTCGACTAAGTTTTGTCGCTTCTCCCCATTTCTTCTTCTTTCTCTTTGCTTTTG GAGTGTGCTCTGTCGCAAGAGCCGTCGAGTTGCATCGGAACACTGCTCATCTGGTGCGCGCCCAAGGGCCTCTTG CTTTTCTGCCCCAGCACTCACAGCTCTGCTCGCCTCGCCTCGAAAATCTTGGCGACCTGAGTGCGAGGTGAAGAA ACACCACAAGAAAAGGAAAGGGAAAAAAAAAAAAACTGAAGAGAAGACGCGCTGACAGTCTCTCTCCTGATTCTT AGGCAACTCGCGCCGGCGTCTTCGTCGGCAAGCTGCGGTCGAACCCGAACAAGGAAATCGCGCGAGCGGCGTCCG AGCTCGTCATCAAGTGGAAGAAGCTGGTCGAGCAGGAGAAGAACTCGAAGCTGCAGAAGGCTAAGATGGGCTCGC CGGCGCCTGCCGCGGCCGCACTGCCGCCGGCGCCCGCCGCCGGCTCCAAACGGGCCTTCACGGGCGACCCCGAGA AGCGTAAGTTCGACAGCGACGGCGTCGACATCAAGCGCACCGACTCCAACGTCCGCAACCAGTGCATCGGCCTCA TCTACAACGGCCTCGCCTTCCGGTCCACTGACCCGCCCACCGACGTCATCGCCAAGGCGGTCGCGGTCGAGCAGG CCGTCCTCGACGTCTTCAAGGGCGAGAACGCCGAGTACAAGAAGAAGATACGCTCGCTCTTCGCCAACCTCAAGA ACAAGTCCAACAAGGAGCTGGGCCGCCGCGTCATGACGGGCGAGATCCCGGCCGACCGCTTCGCCGTCATGACCG ACGAAGACCTCAAGAGCGACGACCAGCGCAAGAAGGACCTCGAGCTCGAGAAGGAGAACATGAAGAAGGCCCAGG TGCCCATGGCCGAGAAGAGCATCAGCGACAGCCTCGAGTGCAGCCGCTGCAAGAAGAAGAAGGTCAGCTACACGC AGGCCCAGACGCGGAGCGCCGACGAGCCCATGACGACGTTTTGCGAGTGCATGAACTGCGGCCACCGCTGGAAGG TACGTCTTGACCCTGGGCCTCTCGAGCGCCGTCCCCCACGCCCTGCTCGCTCCCGACGCTGACGCTCCGTCCTCG CAGTTCTCCTGA |