© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|1947 |
| Gene name | |
| Location | Contig_1448:1356..2637 |
| Strand | + |
| Gene length (bp) | 1281 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1342 | 0.0763 | 0.4441 | 0.3719 | 0.2888 | 0.2571 | 0.4643 | 0.3613 | 0.2248 | 0.0154 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.998902 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 171 | 193 | 22 |
| 2 | 208 | 230 | 22 |
| 3 | 332 | 354 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6048 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1947 MLASRYVAAAVSLLWAAARGRPTQQFDQFSSTWHEAVQEIIQRKCLREFNDYKAGLPAQHSQRERVTRVLNCILT DMSDLYKVNIAASAVVLGSAPMILQALGSTTAETALLGLRRPLLSFLLAAGSPAVATLKSSEFIEMLARFVRGGE TRNIGLPGFRWRRVHAGLRPAISLAEYVVVGVAATNVVLLAYEMGIHAILVFTPAKTWLPPLWTLLALTIHAGGT IALHLRVRVAPAEARPGDDPPPTGFMTQEERDEAAAAAAAAAAATSEKKKQRAGGGISIGIGRASSGFSRGGRGG GGGGWWTVPNEFIPSAFQRPCRLVWRREHAAFYAVSWFLSIVTVAHVLFGTLIFSSLLFFSVRDSVKVVARYAGS AIVCRAVVRFELAGLTEATTSTRDAATMTAAPVADEEAATRGGLFRADVLG* |
| Coding | >Hirsu2|1947 ATGCTTGCGTCGAGGTACGTGGCGGCGGCGGTGTCGCTGCTGTGGGCGGCGGCGCGCGGACGGCCGACGCAGCAG TTCGACCAGTTCTCGTCGACGTGGCACGAGGCGGTGCAGGAGATCATCCAGCGCAAGTGCCTGCGCGAGTTCAAC GACTACAAGGCCGGGCTGCCGGCGCAGCACAGCCAGCGGGAGCGGGTGACGCGGGTGCTCAACTGCATCCTGACC GACATGAGCGACCTGTACAAGGTCAACATCGCGGCCAGCGCCGTCGTGCTCGGCTCGGCGCCCATGATCCTGCAG GCGCTGGGCAGCACGACGGCGGAGACGGCGCTGCTGGGCCTGCGCCGGCCGCTGCTGTCCTTCTTGCTGGCGGCC GGCAGCCCGGCGGTGGCGACGCTCAAGTCGAGCGAGTTCATCGAGATGCTGGCCCGCTTCGTGCGCGGCGGCGAG ACGCGCAACATCGGCCTGCCGGGCTTCCGCTGGCGCCGCGTCCACGCCGGACTGCGGCCGGCCATCAGCCTGGCC GAGTACGTCGTGGTCGGCGTCGCCGCCACCAACGTCGTGCTGCTGGCCTACGAGATGGGCATCCACGCCATCCTC GTCTTCACCCCGGCCAAGACCTGGCTGCCGCCGCTGTGGACCCTGCTGGCGCTGACCATCCACGCCGGCGGCACC ATCGCCCTGCACCTGCGCGTGCGGGTGGCGCCGGCCGAGGCGCGGCCGGGCGACGACCCGCCACCCACGGGCTTC ATGACGCAGGAGGAGAGGGACGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGTCGGAGAAGAAGAAG CAGCGGGCCGGCGGGGGCATCAGCATCGGCATCGGCCGCGCCAGCAGCGGCTTCAGCCGGGGCGGGCGGGGCGGC GGCGGCGGCGGGTGGTGGACGGTGCCCAACGAGTTCATCCCGTCGGCCTTCCAGCGGCCGTGCCGGCTGGTGTGG CGGCGGGAGCACGCGGCCTTCTACGCCGTCAGCTGGTTCCTCAGCATCGTCACCGTCGCCCACGTCCTCTTCGGC ACCCTCATCTTCTCCAGCCTGCTCTTCTTCAGCGTGCGCGACTCGGTCAAGGTGGTGGCGCGCTACGCCGGCAGC GCCATCGTCTGCCGCGCCGTCGTCCGCTTCGAGCTGGCCGGCCTGACGGAGGCGACGACGTCGACCCGCGACGCC GCCACCATGACGGCCGCCCCCGTGGCCGACGAGGAGGCTGCGACGCGAGGCGGCCTCTTCCGAGCCGACGTCCTC GGATGA |
| Transcript | >Hirsu2|1947 ATGCTTGCGTCGAGGTACGTGGCGGCGGCGGTGTCGCTGCTGTGGGCGGCGGCGCGCGGACGGCCGACGCAGCAG TTCGACCAGTTCTCGTCGACGTGGCACGAGGCGGTGCAGGAGATCATCCAGCGCAAGTGCCTGCGCGAGTTCAAC GACTACAAGGCCGGGCTGCCGGCGCAGCACAGCCAGCGGGAGCGGGTGACGCGGGTGCTCAACTGCATCCTGACC GACATGAGCGACCTGTACAAGGTCAACATCGCGGCCAGCGCCGTCGTGCTCGGCTCGGCGCCCATGATCCTGCAG GCGCTGGGCAGCACGACGGCGGAGACGGCGCTGCTGGGCCTGCGCCGGCCGCTGCTGTCCTTCTTGCTGGCGGCC GGCAGCCCGGCGGTGGCGACGCTCAAGTCGAGCGAGTTCATCGAGATGCTGGCCCGCTTCGTGCGCGGCGGCGAG ACGCGCAACATCGGCCTGCCGGGCTTCCGCTGGCGCCGCGTCCACGCCGGACTGCGGCCGGCCATCAGCCTGGCC GAGTACGTCGTGGTCGGCGTCGCCGCCACCAACGTCGTGCTGCTGGCCTACGAGATGGGCATCCACGCCATCCTC GTCTTCACCCCGGCCAAGACCTGGCTGCCGCCGCTGTGGACCCTGCTGGCGCTGACCATCCACGCCGGCGGCACC ATCGCCCTGCACCTGCGCGTGCGGGTGGCGCCGGCCGAGGCGCGGCCGGGCGACGACCCGCCACCCACGGGCTTC ATGACGCAGGAGGAGAGGGACGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGTCGGAGAAGAAGAAG CAGCGGGCCGGCGGGGGCATCAGCATCGGCATCGGCCGCGCCAGCAGCGGCTTCAGCCGGGGCGGGCGGGGCGGC GGCGGCGGCGGGTGGTGGACGGTGCCCAACGAGTTCATCCCGTCGGCCTTCCAGCGGCCGTGCCGGCTGGTGTGG CGGCGGGAGCACGCGGCCTTCTACGCCGTCAGCTGGTTCCTCAGCATCGTCACCGTCGCCCACGTCCTCTTCGGC ACCCTCATCTTCTCCAGCCTGCTCTTCTTCAGCGTGCGCGACTCGGTCAAGGTGGTGGCGCGCTACGCCGGCAGC GCCATCGTCTGCCGCGCCGTCGTCCGCTTCGAGCTGGCCGGCCTGACGGAGGCGACGACGTCGACCCGCGACGCC GCCACCATGACGGCCGCCCCCGTGGCCGACGAGGAGGCTGCGACGCGAGGCGGCCTCTTCCGAGCCGACGTCCTC GGATGA |
| Gene | >Hirsu2|1947 ATGCTTGCGTCGAGGTACGTGGCGGCGGCGGTGTCGCTGCTGTGGGCGGCGGCGCGCGGACGGCCGACGCAGCAG TTCGACCAGTTCTCGTCGACGTGGCACGAGGCGGTGCAGGAGATCATCCAGCGCAAGTGCCTGCGCGAGTTCAAC GACTACAAGGCCGGGCTGCCGGCGCAGCACAGCCAGCGGGAGCGGGTGACGCGGGTGCTCAACTGCATCCTGACC GACATGAGCGACCTGTACAAGGTCAACATCGCGGCCAGCGCCGTCGTGCTCGGCTCGGCGCCCATGATCCTGCAG GCGCTGGGCAGCACGACGGCGGAGACGGCGCTGCTGGGCCTGCGCCGGCCGCTGCTGTCCTTCTTGCTGGCGGCC GGCAGCCCGGCGGTGGCGACGCTCAAGTCGAGCGAGTTCATCGAGATGCTGGCCCGCTTCGTGCGCGGCGGCGAG ACGCGCAACATCGGCCTGCCGGGCTTCCGCTGGCGCCGCGTCCACGCCGGACTGCGGCCGGCCATCAGCCTGGCC GAGTACGTCGTGGTCGGCGTCGCCGCCACCAACGTCGTGCTGCTGGCCTACGAGATGGGCATCCACGCCATCCTC GTCTTCACCCCGGCCAAGACCTGGCTGCCGCCGCTGTGGACCCTGCTGGCGCTGACCATCCACGCCGGCGGCACC ATCGCCCTGCACCTGCGCGTGCGGGTGGCGCCGGCCGAGGCGCGGCCGGGCGACGACCCGCCACCCACGGGCTTC ATGACGCAGGAGGAGAGGGACGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGTCGGAGAAGAAGAAG CAGCGGGCCGGCGGGGGCATCAGCATCGGCATCGGCCGCGCCAGCAGCGGCTTCAGCCGGGGCGGGCGGGGCGGC GGCGGCGGCGGGTGGTGGACGGTGCCCAACGAGTTCATCCCGTCGGCCTTCCAGCGGCCGTGCCGGCTGGTGTGG CGGCGGGAGCACGCGGCCTTCTACGCCGTCAGCTGGTTCCTCAGCATCGTCACCGTCGCCCACGTCCTCTTCGGC ACCCTCATCTTCTCCAGCCTGCTCTTCTTCAGCGTGCGCGACTCGGTCAAGGTGGTGGCGCGCTACGCCGGCAGC GCCATCGTCTGCCGCGCCGTCGTCCGCTTCGAGCTGGCCGGCCTGACGGAGGCGACGACGTCGACCCGCGACGCC GCCACCATGACGGCCGCCCCCGTGGCCGACGAGGAGGCTGCGACGCGAGGCGGCCTCTTCCGAGCCGACGTCCTC GGATGA |