Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1915
Gene name
LocationContig_1439:2456..3256
Strand+
Gene length (bp)800
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 1.4E-14 155 216

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BOS1 PE=3 SV=1 1 239 3.0E-37
sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bos1 PE=3 SV=1 2 243 1.0E-36
sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BOS1 PE=3 SV=1 1 243 1.0E-32
sp|P25385|BOS1_YEAST Protein transport protein BOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BOS1 PE=1 SV=1 1 243 1.0E-17
sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2 1 242 2.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BOS1 PE=3 SV=1 1 239 3.0E-37
sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bos1 PE=3 SV=1 2 243 1.0E-36
sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BOS1 PE=3 SV=1 1 243 1.0E-32
sp|P25385|BOS1_YEAST Protein transport protein BOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BOS1 PE=1 SV=1 1 243 1.0E-17
sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2 1 242 2.0E-15
sp|Q75CY3|BOS1_ASHGO Protein transport protein BOS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BOS1 PE=3 SV=2 1 239 3.0E-15
sp|O35166|GOSR2_MOUSE Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=1 SV=2 1 242 1.0E-14
sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila melanogaster GN=Membrin PE=2 SV=1 161 242 1.0E-13
sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1 47 243 7.0E-13
sp|O14653|GOSR2_HUMAN Golgi SNAP receptor complex member 2 OS=Homo sapiens GN=GOSR2 PE=1 SV=2 137 242 8.0E-13
sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1 46 243 2.0E-12
sp|Q6FKA1|BOS1_CANGA Protein transport protein BOS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BOS1 PE=3 SV=1 1 243 6.0E-11
sp|A8XP14|GOSR2_CAEBR Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis briggsae GN=gosr-2.1 PE=3 SV=1 153 243 2.0E-10
sp|Q6CRX0|BOS1_KLULA Protein transport protein BOS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=BOS1 PE=3 SV=1 1 221 3.0E-09
sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis elegans GN=gosr-2.1 PE=3 SV=1 153 243 6.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

Domain # Start End Length
1 222 241 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1915
MNVLYNMTLRQSRALRSELEGLNTKGVPTPADIGNVSASLSTFSKSLEEYHHLARQELVQKKQEEAFERVKRFRE
DLSDFRSQVDGLKKAREDAQHQTNRTELLGRRPYNATPENPYANESTTTTHSAFQPRHAPHANEGLTTGSADELR
EAHALREQNFFANTNQALDDYIARGQAVLGDLGQQREMLKNTQKRLYNVANTLGVSGDTIRMVERRAREDKWIFF
AGVIVFFLFCWLVLHYLR*
Coding >Hirsu2|1915
ATGAATGTGTTGTACAACATGACCTTGCGGCAGAGCAGGGCGCTCCGCAGCGAACTGGAAGGCCTCAACACCAAG
GGAGTACCGACACCAGCCGACATCGGCAACGTGTCCGCCTCTCTCTCGACTTTCAGCAAGTCACTCGAGGAATAC
CATCACCTGGCCCGCCAAGAGCTGGTGCAGAAGAAGCAAGAGGAGGCCTTCGAGCGGGTAAAGAGATTCCGCGAG
GACCTGTCCGACTTCCGCTCGCAGGTCGACGGGCTGAAGAAGGCGAGAGAGGATGCGCAACATCAGACGAACAGG
ACGGAGCTGCTGGGCAGGAGACCCTACAACGCCACGCCCGAGAACCCCTACGCGAACGAGAGCACGACGACGACG
CACTCGGCCTTCCAACCCCGGCATGCGCCCCATGCCAACGAGGGCCTGACGACCGGCTCGGCCGACGAGCTGCGC
GAAGCCCACGCGCTCCGCGAGCAAAACTTCTTCGCCAACACAAACCAGGCGCTCGACGATTACATCGCCCGCGGG
CAGGCCGTCCTGGGTGACCTGGGGCAGCAGCGCGAGATGCTCAAGAACACGCAGAAGAGGCTATACAACGTGGCC
AACACCCTCGGCGTCAGCGGCGACACCATCCGCATGGTCGAGCGACGAGCGCGCGAGGACAAGTGGATCTTCTTT
GCAGGCGTCATCGTCTTCTTCCTGTTCTGCTGGCTCGTACTGCACTACCTGCGGTGA
Transcript >Hirsu2|1915
ATGAATGTGTTGTACAACATGACCTTGCGGCAGAGCAGGGCGCTCCGCAGCGAACTGGAAGGCCTCAACACCAAG
GGAGTACCGACACCAGCCGACATCGGCAACGTGTCCGCCTCTCTCTCGACTTTCAGCAAGTCACTCGAGGAATAC
CATCACCTGGCCCGCCAAGAGCTGGTGCAGAAGAAGCAAGAGGAGGCCTTCGAGCGGGTAAAGAGATTCCGCGAG
GACCTGTCCGACTTCCGCTCGCAGGTCGACGGGCTGAAGAAGGCGAGAGAGGATGCGCAACATCAGACGAACAGG
ACGGAGCTGCTGGGCAGGAGACCCTACAACGCCACGCCCGAGAACCCCTACGCGAACGAGAGCACGACGACGACG
CACTCGGCCTTCCAACCCCGGCATGCGCCCCATGCCAACGAGGGCCTGACGACCGGCTCGGCCGACGAGCTGCGC
GAAGCCCACGCGCTCCGCGAGCAAAACTTCTTCGCCAACACAAACCAGGCGCTCGACGATTACATCGCCCGCGGG
CAGGCCGTCCTGGGTGACCTGGGGCAGCAGCGCGAGATGCTCAAGAACACGCAGAAGAGGCTATACAACGTGGCC
AACACCCTCGGCGTCAGCGGCGACACCATCCGCATGGTCGAGCGACGAGCGCGCGAGGACAAGTGGATCTTCTTT
GCAGGCGTCATCGTCTTCTTCCTGTTCTGCTGGCTCGTACTGCACTACCTGCGGTGA
Gene >Hirsu2|1915
ATGGTACGAAGGAAAATCCCTCAAGACCACACACGAATGTCACCGCCAGTCGGCTAACACCAAACCTCCAGAATG
TGTTGTACAACATGACCTTGCGGCAGAGCAGGGCGCTCCGCAGCGAACTGGAAGGCCTCAACACCAAGGGAGTAC
CGACACCAGCCGACATCGGCAACGTGTCCGCCTCTCTCTCGACTTTCAGCAAGTCACTCGAGGAATACCATCACC
TGGCCCGCCAAGAGCTGGTGCAGAAGAAGCAAGAGGAGGCCTTCGAGCGGGTAAAGAGATTCCGCGAGGACCTGT
CCGACTTCCGCTCGCAGGTCGACGGGCTGAAGAAGGCGAGAGAGGATGCGCAACATCAGACGAACAGGACGGAGC
TGCTGGGCAGGAGACCCTACAACGCCACGCCCGAGAACCCCTACGCGAACGAGAGCACGACGACGACGCACTCGG
CCTTCCAACCCCGGCATGCGCCCCATGCCAACGAGGGCCTGACGACCGGCTCGGCCGACGAGCTGCGCGAAGCCC
ACGCGCTCCGCGAGCAAAACTTCTTCGCCAACACAAACCAGGCGCTCGACGATTACATCGCCCGCGGGCAGGCCG
TCCTGGGTGACCTGGGGCAGCAGCGCGAGATGCTCAAGAACACGCAGAAGAGGCTATACAACGTGGCCAACACCC
TCGGCGTCAGCGGCGACACCATCCGCATGGTCGAGCGACGAGCGCGCGAGGACAAGTGGATCTTCTTTGCAGGCG
TCATCGTCTTCTTCCTGTTCTGCTGGCTCGTACTGCACTACCTGCGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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