© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|191 |
| Gene name | |
| Location | Contig_1031:75..405 |
| Strand | + |
| Gene length (bp) | 330 |
| Transcript length (bp) | 330 |
| Coding sequence length (bp) | 330 |
| Protein length (aa) | 110 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13883 | Pyrid_oxidase_2 | Pyridoxamine 5'-phosphate oxidase | 3.6E-26 | 2 | 77 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Peroxisomal targeting signal | 0.552 | 0.4897 | 0.1786 | 0.0923 | 0.5261 | 0.034 | 0.0613 | 0.1588 | 0.0187 | 0.6904 |
| Orthofinder run ID | 4 |
| Orthogroup | 1871 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|191 LPRFSLFGHLEPVEPSEAEAGRLAACYTDKHPDAKHWLPGNKIHASEWMRFVVSGVYWVGGFGDRAYIGWIPVAE WKSVTADDWQSIRLPGEKPGWDENEWSSETAGEL* |
| Coding | >Hirsu2|191 CTGCCGCGCTTCTCCCTCTTCGGCCACCTCGAGCCGGTCGAGCCGTCCGAGGCCGAGGCCGGGCGGCTGGCCGCC TGCTACACGGACAAGCACCCGGACGCCAAGCACTGGCTGCCCGGCAACAAGATCCACGCGAGCGAGTGGATGCGC TTTGTCGTCAGCGGCGTCTACTGGGTCGGCGGCTTCGGCGACAGGGCCTACATCGGCTGGATCCCCGTCGCCGAG TGGAAGAGCGTCACGGCCGACGACTGGCAGTCCATCCGGCTGCCCGGCGAGAAGCCGGGCTGGGACGAGAACGAG TGGAGCTCCGAGACGGCCGGCGAGCTGTGA |
| Transcript | >Hirsu2|191 CTGCCGCGCTTCTCCCTCTTCGGCCACCTCGAGCCGGTCGAGCCGTCCGAGGCCGAGGCCGGGCGGCTGGCCGCC TGCTACACGGACAAGCACCCGGACGCCAAGCACTGGCTGCCCGGCAACAAGATCCACGCGAGCGAGTGGATGCGC TTTGTCGTCAGCGGCGTCTACTGGGTCGGCGGCTTCGGCGACAGGGCCTACATCGGCTGGATCCCCGTCGCCGAG TGGAAGAGCGTCACGGCCGACGACTGGCAGTCCATCCGGCTGCCCGGCGAGAAGCCGGGCTGGGACGAGAACGAG TGGAGCTCCGAGACGGCCGGCGAGCTGTGA |
| Gene | >Hirsu2|191 CTGCCGCGCTTCTCCCTCTTCGGCCACCTCGAGCCGGTCGAGCCGTCCGAGGCCGAGGCCGGGCGGCTGGCCGCC TGCTACACGGACAAGCACCCGGACGCCAAGCACTGGCTGCCCGGCAACAAGATCCACGCGAGCGAGTGGATGCGC TTTGTCGTCAGCGGCGTCTACTGGGTCGGCGGCTTCGGCGACAGGGCCTACATCGGCTGGATCCCCGTCGCCGAG TGGAAGAGCGTCACGGCCGACGACTGGCAGTCCATCCGGCTGCCCGGCGAGAAGCCGGGCTGGGACGAGAACGAG TGGAGCTCCGAGACGGCCGGCGAGCTGTGA |