© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1906 |
| Gene name | |
| Location | Contig_1436:4383..5519 |
| Strand | + |
| Gene length (bp) | 1136 |
| Transcript length (bp) | 912 |
| Coding sequence length (bp) | 912 |
| Protein length (aa) | 304 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02265 | S1-P1_nuclease | S1/P1 Nuclease | 7.8E-71 | 21 | 287 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24021|NUS1_ASPOR | Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 | 4 | 289 | 5.0E-89 |
| sp|P24504|NUP3_PENSQ | Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 | 21 | 286 | 2.0E-67 |
| sp|P24289|NUP1_PENCI | Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 | 21 | 286 | 6.0E-67 |
| sp|F4JJL0|ENDO4_ARATH | Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1 | 18 | 288 | 3.0E-39 |
| sp|Q8LDW6|ENDO3_ARATH | Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 | 18 | 297 | 1.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24021|NUS1_ASPOR | Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 | 4 | 289 | 5.0E-89 |
| sp|P24504|NUP3_PENSQ | Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 | 21 | 286 | 2.0E-67 |
| sp|P24289|NUP1_PENCI | Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 | 21 | 286 | 6.0E-67 |
| sp|F4JJL0|ENDO4_ARATH | Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1 | 18 | 288 | 3.0E-39 |
| sp|Q8LDW6|ENDO3_ARATH | Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 | 18 | 297 | 1.0E-36 |
| sp|F4JJL3|ENDO5_ARATH | Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1 | 17 | 288 | 6.0E-32 |
| sp|Q9C9G4|ENDO2_ARATH | Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1 | 12 | 286 | 3.0E-30 |
| sp|Q9SXA6|ENDO1_ARATH | Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1 | 20 | 289 | 5.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006308 | DNA catabolic process | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0004519 | endonuclease activity | Yes |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0005488 | binding | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:1901575 | organic substance catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1906 MKTPLGAAALGLIFAPAAVAWGSLGHITTAYLASHYIADSTESFFKELLRNDDDDYLASVASWADSVRYTRWGRF TKTFHFIDAHDDPPYSCNVDFERDCKETGCVINALANYTDQLLDDSLPAWRRAQAAKFVIHFVGDLHQPMHNENV EKGGNGIYVLWEGREFNLHHVWDSSIAEKWIGGLRGGVYPLAEKWANQLAVEISDGKFADDKEDWLKDLDLDDAI ETAMAWSREANAIVCTHVFPDGVDAVDGQELAGRYFEEAGPVIEKQVARAGFRMAAWLDGIVAECEARRAARQMS VEL* |
| Coding | >Hirsu2|1906 ATGAAGACGCCGCTCGGCGCCGCGGCCTTGGGCCTCATCTTCGCCCCCGCCGCCGTCGCCTGGGGAAGTCTCGGT CACATCACGACGGCCTACCTGGCCAGCCACTACATCGCCGACTCGACCGAGTCCTTCTTCAAGGAGCTCCTGCGC AACGACGACGACGACTACCTGGCCAGCGTCGCCTCGTGGGCCGACTCGGTCCGGTATACGCGATGGGGCCGCTTC ACCAAGACGTTCCACTTCATCGACGCCCACGACGACCCGCCCTACTCGTGCAACGTCGACTTCGAGCGCGACTGC AAGGAGACGGGCTGCGTCATCAACGCCCTGGCCAACTACACGGACCAGCTGCTGGACGATTCGCTGCCCGCCTGG CGACGGGCCCAGGCCGCCAAGTTCGTCATCCACTTCGTCGGCGACCTGCACCAGCCGATGCACAACGAGAACGTC GAAAAGGGCGGCAACGGCATCTACGTGCTCTGGGAGGGCAGGGAGTTCAACCTGCACCACGTCTGGGACAGCTCC ATCGCCGAGAAGTGGATCGGCGGCTTGCGAGGAGGCGTCTATCCGCTGGCCGAGAAGTGGGCGAACCAGCTGGCC GTCGAAATCTCGGACGGCAAGTTCGCCGACGACAAGGAGGACTGGCTCAAGGACCTTGATCTGGACGATGCCATC GAGACGGCCATGGCGTGGTCGCGCGAGGCCAACGCCATTGTGTGCACCCACGTCTTCCCCGATGGCGTCGATGCC GTGGATGGCCAGGAGCTAGCCGGACGCTACTTCGAAGAGGCTGGCCCGGTCATCGAGAAACAGGTCGCGCGCGCC GGCTTCCGGATGGCGGCCTGGCTGGACGGCATCGTTGCCGAGTGTGAGGCGCGCAGGGCGGCACGACAGATGTCG GTGGAACTGTAG |
| Transcript | >Hirsu2|1906 ATGAAGACGCCGCTCGGCGCCGCGGCCTTGGGCCTCATCTTCGCCCCCGCCGCCGTCGCCTGGGGAAGTCTCGGT CACATCACGACGGCCTACCTGGCCAGCCACTACATCGCCGACTCGACCGAGTCCTTCTTCAAGGAGCTCCTGCGC AACGACGACGACGACTACCTGGCCAGCGTCGCCTCGTGGGCCGACTCGGTCCGGTATACGCGATGGGGCCGCTTC ACCAAGACGTTCCACTTCATCGACGCCCACGACGACCCGCCCTACTCGTGCAACGTCGACTTCGAGCGCGACTGC AAGGAGACGGGCTGCGTCATCAACGCCCTGGCCAACTACACGGACCAGCTGCTGGACGATTCGCTGCCCGCCTGG CGACGGGCCCAGGCCGCCAAGTTCGTCATCCACTTCGTCGGCGACCTGCACCAGCCGATGCACAACGAGAACGTC GAAAAGGGCGGCAACGGCATCTACGTGCTCTGGGAGGGCAGGGAGTTCAACCTGCACCACGTCTGGGACAGCTCC ATCGCCGAGAAGTGGATCGGCGGCTTGCGAGGAGGCGTCTATCCGCTGGCCGAGAAGTGGGCGAACCAGCTGGCC GTCGAAATCTCGGACGGCAAGTTCGCCGACGACAAGGAGGACTGGCTCAAGGACCTTGATCTGGACGATGCCATC GAGACGGCCATGGCGTGGTCGCGCGAGGCCAACGCCATTGTGTGCACCCACGTCTTCCCCGATGGCGTCGATGCC GTGGATGGCCAGGAGCTAGCCGGACGCTACTTCGAAGAGGCTGGCCCGGTCATCGAGAAACAGGTCGCGCGCGCC GGCTTCCGGATGGCGGCCTGGCTGGACGGCATCGTTGCCGAGTGTGAGGCGCGCAGGGCGGCACGACAGATGTCG GTGGAACTGTAG |
| Gene | >Hirsu2|1906 ATGAAGACGCCGCTCGGCGCCGCGGCCTTGGGCCTCATCTTCGCCCCCGCCGCCGTCGCCTGGGGAAGTATGTTG GTCCCGCTTCCGTCCCCGCCGGCCCCGTCTCCGGCCGTCTCACCTCCGCCGCCGGGGGGGGAAAGCTCCTTGCCT CCCACCCCCTCCCCGGCCAACAAGGCCGCACGGACTGACGGAAGCGTCAGGTCTCGGTCACATCACGACGGCCTA CCTGGCCAGCCACTACATCGCCGACTCGACCGAGTCCTTCTTCAAGGAGCTCCTGCGCAACGACGACGACGACTA CCTGGCCAGCGTCGCCTCGTGGGCCGACTCGGTCCGGTATACGCGATGGGGCCGCTTCACCAAGACGTTCCACTT CATCGACGCCCACGACGACCCGCCCTACTCGTGCAACGTCGACTTCGAGCGCGACTGCAAGGAGACGGGCTGCGT CATCAACGCCCTGGCCAACTACACGGACCAGCTGCTGGACGATTCGCTGCCCGCCTGGCGACGGGCCCAGGCCGC CAAGTTCGTCATCCACTTCGTCGGCGACCTGCACCAGCCGATGCACAACGAGAACGTCGAAAAGGGCGGCAACGG CATCTACGTGCTCTGGGAGGGCAGGGAGTTCAACCTGCACCACGTCTGGGACAGCTCCATCGCCGAGAAGTGGAT CGGCGGCTTGCGAGGAGGCGTCTATCCGCTGGCCGAGAAGTGGGCGAACCAGCTGGCCGTCGAAATCTCGGACGG CAAGTTCGCCGACGACAAGGAGGACTGGCTCAAGGACCTTGATCTGGACGATGCCATCGAGACGGCCATGGCGTG GTCGCGCGAGGCCAACGCCATTGTGTGCACCCACGGTAAGTCCCAAGTCCAAATGAGACGATTCCTCGACTCCAG ACGAGCGCCGGGCCTTGGCTCATCCGGTAACCCTGTCTCTGTCGCTTCCAGTCTTCCCCGATGGCGTCGATGCCG TGGATGGCCAGGAGCTAGCCGGACGCTACTTCGAAGAGGCTGGCCCGGTCATCGAGAAACAGGTCGCGCGCGCCG GCTTCCGGATGGCGGCCTGGCTGGACGGCATCGTTGCCGAGTGTGAGGCGCGCAGGGCGGCACGACAGATGTCGG TGGAACTGTAG |