Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|1905
Gene name
Location	Contig_1436:1695..2994
Strand	-
Gene length (bp)	1299
Transcript length (bp)	939
Coding sequence length (bp)	939
Protein length (aa)	313

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	1.3E-17	19	76
PF04193	PQ-loop	PQ loop repeat	7.4E-21	216	270

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38279\|YPQ3_YEAST	Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1	16	303	2.0E-47
sp\|Q12010\|YPQ1_YEAST	Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1	34	302	8.0E-44
sp\|Q95XZ6\|LAAT1_CAEEL	Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2	17	302	3.0E-39
sp\|Q10482\|STM1_SCHPO	Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1	19	302	3.0E-35
sp\|Q06328\|YPQ2_YEAST	Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1	18	311	2.0E-26

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38279\|YPQ3_YEAST	Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1	16	303	2.0E-47
sp\|Q12010\|YPQ1_YEAST	Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1	34	302	8.0E-44
sp\|Q95XZ6\|LAAT1_CAEEL	Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2	17	302	3.0E-39
sp\|Q10482\|STM1_SCHPO	Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1	19	302	3.0E-35
sp\|Q06328\|YPQ2_YEAST	Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1	18	311	2.0E-26
sp\|Q5ZJX0\|LAAT1_CHICK	Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1	20	305	8.0E-19
sp\|Q6ZP29\|LAAT1_HUMAN	Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1	24	302	2.0E-15
sp\|B0BMY1\|LAAT1_RAT	Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1	202	302	4.0E-10
sp\|Q8C4N4\|LAAT1_MOUSE	Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1	24	302	2.0E-08

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	15	37	22
2	50	72	22
3	77	99	22
4	170	192	22
5	212	234	22
6	246	268	22
7	278	297	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|1905 MASFTAAAAAGPLPLAQALSGIFGSISLTAWICLLLPQLWANYKAKSADGLSITFLIVWSLGDVTNLSGALLTDL APSAVALAVYFCILDVTLISQCLYYNTINARRRAVAEASSEDSPLLARRQSTSSGPDGARGSPAEHEETAARLAR KNAAAGDEAAIDGGSWKHNALSLLAVYAIGFAGWFVSYMAGAWGSETPKVPDAADERSHSRVVAGLVLGYASAAC YLCARIPQIVKNYREKSCEGLSLLFFMLSLTGNLTYGVSLIAYSQGKDYLLKALPWLLGSLGTIVEDATIFVQFR LYAGGLRTEALG*
Coding	>Hirsu2\|1905 ATGGCTTCCTTCACCGCCGCCGCCGCCGCCGGGCCGTTGCCTCTGGCCCAGGCCCTGTCGGGCATCTTTGGCAGC ATCAGTCTGACGGCCTGGATCTGCCTGCTGCTCCCCCAGCTGTGGGCCAACTACAAGGCCAAGAGCGCCGACGGC CTCAGCATCACCTTTCTCATTGTCTGGTCCTTGGGAGACGTGACAAATCTGTCAGGTGCCCTCCTGACAGACCTG GCGCCGAGTGCCGTCGCCCTGGCCGTCTACTTCTGCATCCTGGACGTGACGCTCATCAGCCAGTGCCTGTACTAC AACACCATCAATGCGCGCCGGAGAGCCGTGGCCGAGGCGAGCTCGGAGGACTCGCCGCTCCTCGCGCGGCGGCAG AGCACCTCGTCCGGCCCGGACGGCGCCCGGGGGAGCCCGGCCGAGCACGAAGAGACGGCGGCGCGGCTTGCCCGC AAGAATGCCGCGGCCGGCGACGAGGCCGCCATCGACGGCGGTTCGTGGAAACACAACGCCCTGAGCCTGTTGGCC GTCTACGCCATCGGCTTCGCCGGCTGGTTCGTCTCCTACATGGCCGGCGCCTGGGGCAGCGAGACGCCCAAGGTC CCCGACGCGGCGGACGAGAGGAGCCACTCGCGCGTCGTTGCCGGCCTCGTTCTCGGCTACGCCAGCGCGGCCTGT TACCTCTGCGCTCGGATACCTCAGATTGTCAAGAACTACCGGGAGAAGTCTTGCGAAGGCCTGTCGCTTCTCTTC TTCATGCTGTCTCTGACCGGCAACCTGACGTATGGCGTGAGCCTGATCGCCTATTCGCAGGGAAAGGACTATCTG CTGAAGGCGCTCCCCTGGCTCCTGGGGTCGCTCGGCACGATTGTGGAGGACGCCACGATATTCGTCCAGTTCCGG CTCTACGCTGGCGGGCTCCGCACGGAAGCACTCGGCTGA
Transcript	>Hirsu2\|1905 ATGGCTTCCTTCACCGCCGCCGCCGCCGCCGGGCCGTTGCCTCTGGCCCAGGCCCTGTCGGGCATCTTTGGCAGC ATCAGTCTGACGGCCTGGATCTGCCTGCTGCTCCCCCAGCTGTGGGCCAACTACAAGGCCAAGAGCGCCGACGGC CTCAGCATCACCTTTCTCATTGTCTGGTCCTTGGGAGACGTGACAAATCTGTCAGGTGCCCTCCTGACAGACCTG GCGCCGAGTGCCGTCGCCCTGGCCGTCTACTTCTGCATCCTGGACGTGACGCTCATCAGCCAGTGCCTGTACTAC AACACCATCAATGCGCGCCGGAGAGCCGTGGCCGAGGCGAGCTCGGAGGACTCGCCGCTCCTCGCGCGGCGGCAG AGCACCTCGTCCGGCCCGGACGGCGCCCGGGGGAGCCCGGCCGAGCACGAAGAGACGGCGGCGCGGCTTGCCCGC AAGAATGCCGCGGCCGGCGACGAGGCCGCCATCGACGGCGGTTCGTGGAAACACAACGCCCTGAGCCTGTTGGCC GTCTACGCCATCGGCTTCGCCGGCTGGTTCGTCTCCTACATGGCCGGCGCCTGGGGCAGCGAGACGCCCAAGGTC CCCGACGCGGCGGACGAGAGGAGCCACTCGCGCGTCGTTGCCGGCCTCGTTCTCGGCTACGCCAGCGCGGCCTGT TACCTCTGCGCTCGGATACCTCAGATTGTCAAGAACTACCGGGAGAAGTCTTGCGAAGGCCTGTCGCTTCTCTTC TTCATGCTGTCTCTGACCGGCAACCTGACGTATGGCGTGAGCCTGATCGCCTATTCGCAGGGAAAGGACTATCTG CTGAAGGCGCTCCCCTGGCTCCTGGGGTCGCTCGGCACGATTGTGGAGGACGCCACGATATTCGTCCAGTTCCGG CTCTACGCTGGCGGGCTCCGCACGGAAGCACTCGGCTGA
Gene	>Hirsu2\|1905 ATGGCTTCCTTCACCGCCGCCGCCGCCGCCGGGCCGTTGCCTCTGGCCCAGGCCCTGTCGGGCATCTTTGGCAGC ATCAGTCTGACGGCCTGGATCTGCCTGCTGGTCGGGCGGCCCCTGATCTCCTCCATATCTGTCCGAGTCGATCCC TTACTGACTCTGTTTCGCAGCTCCCCCAGCTGTGGGCCAACTACAAGGCCAAGAGCGCCGACGGCCTCAGCATCA CCTTTCTCATTGTCTGGTCCTTGGGAGACGTGACAAATCTGTCAGGTATGGCGTGCGCGTGTCCTCGTCGTTCGG CTTCCCCCCTCTCCCACCCCGGCCGAGTCCTCAATGCCTTGGCTATCGCGCCCACGTGCATTACTCATGCCGGCG GCAGCCTGGCACGGATCATCCAGGCTGTGCCAAAAAAAAAAAAAAATGCTGACCCCGGCGCAGGTGCCCTCCTGA CAGACCTGGCGCCGAGTGCCGTCGCCCTGGCCGTCTACTTCTGCATCCTGGACGTGACGCTCATCAGCCAGTGCC TGTACTACAACACCATCAATGCGCGCCGGAGAGCCGTGGCCGAGGCGAGCTCGGAGGACTCGCCGCTCCTCGCGC GGCGGCAGAGCACCTCGTCCGGCCCGGACGGCGCCCGGGGGAGCCCGGCCGAGCACGAAGAGACGGCGGCGCGGC TTGCCCGCAAGAATGCCGCGGCCGGCGACGAGGCCGCCATCGACGGCGGTTCGTGGAAACACAACGCCCTGAGCC TGTTGGCCGTCTACGCCATCGGCTTCGCCGGCTGGTTCGTCTCCTACATGGCCGGCGCCTGGGGCAGCGAGACGC CCAAGGTCCCCGACGCGGCGGACGAGAGGAGCCACTCGCGCGTCGTTGCCGGCCTCGTTCTCGGCTACGCCAGCG CGGCCTGTTACCTCTGGTGCGCGTCCTCCTCCGCTTCCTAACGCGCGCGGCGGACTGACTGACGCGTCCCTTTGC AGCGCTCGGATACCTCAGATTGTCAAGAACTACCGGGAGAAGTCTTGCGAAGGTGAGGCGCGCCGACGTGGGGGA GCTTGGCGCCGTCGCGACACGCTGGTTCTGACGTGACTCGCAGGCCTGTCGCTTCTCTTCTTCATGCTGTCTCTG ACCGGCAACCTGACGTATGGCGTGAGCCTGATCGCCTATTCGCAGGGAAAGGACTATCTGCTGAAGGCGCTCCCC TGGCTCCTGGGGTCGCTCGGCACGATTGTGGAGGACGCCACGATATTCGTCCAGTTCCGGCTCTACGCTGGCGGG CTCCGCACGGAAGCACTCGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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