© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1886 |
| Gene name | |
| Location | Contig_143:21258..22252 |
| Strand | + |
| Gene length (bp) | 994 |
| Transcript length (bp) | 816 |
| Coding sequence length (bp) | 816 |
| Protein length (aa) | 272 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10277 | Frag1 | Frag1/DRAM/Sfk1 family | 1.3E-42 | 9 | 224 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7U1|SFK1_SCHPO | Protein sfk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfk1 PE=3 SV=1 | 3 | 245 | 6.0E-14 |
| sp|P35735|SFK1_YEAST | Protein SFK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFK1 PE=1 SV=1 | 11 | 230 | 4.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 62 | 81 | 19 |
| 3 | 101 | 123 | 22 |
| 4 | 133 | 150 | 17 |
| 5 | 171 | 190 | 19 |
| 6 | 205 | 227 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1886 MALWSFFSYWMLPVFSSLVWFGMLLGMLLHWVIDTNTRHYPEMSEHAHIAYISNVGAHELKPLFIAGSTVTAVFL DLSFVAERWLRHNGRLVPNTSIGEKILASLTILCALIGTLGLILLTILDTWRHHHLHGGFLVVFIVGYLLSAVFI CWEYQRLGIKNRQHRVLRASFWVKLTFVIVEVALVIVFIANSARHEPNVAAVFEWIVAFIFTFYILSFVIDLYPA IRTKEYSSRFEKPGDVEEAATPAPAGSGPTLHQGEYPVVDRNAANF* |
| Coding | >Hirsu2|1886 ATGGCGCTTTGGAGCTTCTTTTCCTACTGGATGTTGCCCGTCTTCTCCAGCCTCGTCTGGTTCGGCATGCTGCTC GGCATGCTGCTCCACTGGGTCATCGACACCAACACCCGCCATTACCCGGAAATGTCGGAACACGCCCACATCGCC TACATCAGCAACGTCGGCGCCCACGAGCTCAAGCCACTCTTCATCGCCGGCTCCACCGTCACCGCCGTCTTCCTC GACCTGTCCTTCGTCGCCGAGCGCTGGCTCCGCCACAACGGCCGCCTCGTCCCCAACACCTCCATCGGCGAGAAG ATCCTCGCCAGCCTGACCATCTTGTGCGCCCTCATCGGCACCCTGGGGCTCATTCTCCTCACCATCCTCGACACC TGGCGCCACCATCACCTGCACGGCGGCTTCCTCGTCGTCTTCATTGTCGGCTACCTGCTCTCCGCCGTCTTCATC TGCTGGGAGTACCAACGTCTCGGCATCAAAAACCGCCAACACCGTGTCCTCCGCGCTTCATTCTGGGTCAAGCTC ACCTTCGTCATCGTCGAGGTGGCTCTTGTCATCGTCTTCATCGCCAACTCGGCGCGTCACGAGCCCAACGTCGCC GCCGTCTTCGAGTGGATCGTCGCCTTCATCTTCACCTTCTACATCCTCTCCTTCGTCATCGATCTCTACCCGGCC ATCCGCACCAAGGAGTACAGCTCCCGCTTCGAGAAGCCCGGTGACGTTGAAGAGGCCGCCACACCCGCTCCCGCC GGCAGCGGCCCCACTCTCCACCAAGGCGAATATCCCGTTGTGGACAGGAATGCCGCCAACTTCTGA |
| Transcript | >Hirsu2|1886 ATGGCGCTTTGGAGCTTCTTTTCCTACTGGATGTTGCCCGTCTTCTCCAGCCTCGTCTGGTTCGGCATGCTGCTC GGCATGCTGCTCCACTGGGTCATCGACACCAACACCCGCCATTACCCGGAAATGTCGGAACACGCCCACATCGCC TACATCAGCAACGTCGGCGCCCACGAGCTCAAGCCACTCTTCATCGCCGGCTCCACCGTCACCGCCGTCTTCCTC GACCTGTCCTTCGTCGCCGAGCGCTGGCTCCGCCACAACGGCCGCCTCGTCCCCAACACCTCCATCGGCGAGAAG ATCCTCGCCAGCCTGACCATCTTGTGCGCCCTCATCGGCACCCTGGGGCTCATTCTCCTCACCATCCTCGACACC TGGCGCCACCATCACCTGCACGGCGGCTTCCTCGTCGTCTTCATTGTCGGCTACCTGCTCTCCGCCGTCTTCATC TGCTGGGAGTACCAACGTCTCGGCATCAAAAACCGCCAACACCGTGTCCTCCGCGCTTCATTCTGGGTCAAGCTC ACCTTCGTCATCGTCGAGGTGGCTCTTGTCATCGTCTTCATCGCCAACTCGGCGCGTCACGAGCCCAACGTCGCC GCCGTCTTCGAGTGGATCGTCGCCTTCATCTTCACCTTCTACATCCTCTCCTTCGTCATCGATCTCTACCCGGCC ATCCGCACCAAGGAGTACAGCTCCCGCTTCGAGAAGCCCGGTGACGTTGAAGAGGCCGCCACACCCGCTCCCGCC GGCAGCGGCCCCACTCTCCACCAAGGCGAATATCCCGTTGTGGACAGGAATGCCGCCAACTTCTGA |
| Gene | >Hirsu2|1886 ATGGCGCTTTGGAGCTTCTTTTCCTACTGGGTACGCTGCTCCCCCCTTCCCTCCCCCCCTGCCTCGGGGGTGCCG CCGGCCCGGTGCTCTCTTGACTGACACCTGACGTGGCGCCGCAGATGTTGCCCGTCTTCTCCAGCCTCGTCTGGT TCGGCATGCTGCTCGGCATGCTGCTCCACTGGGTCATCGACACCAACACCCGCCATTACCCGGAAATGTCGGAAC ACGCCCACATCGCCTACATCAGCAACGTCGGCGCCCACGAGCTCAAGCCACTCTTCATCGCCGGCTCCACCGTCA CCGCCGTCTTCCTCGACCTGTCCTTCGTCGCCGAGCGCTGGCTCCGCCACAACGGCCGCCTCGTCCCCAACACCT CCATCGGCGAGAAGATCCTCGCCAGCCTGACCATCTTGTGCGCCCTCATCGGCACCCTGGGGCTCATTCTCCTCA CCATCCTCGACACCTGGCGCCACCATCACCTGCACGGCGGCTTCCTCGTCGTCTTCATTGTCGGCTACCTGCTCT CCGCCGTCTTCATCTGCTGGGAGTACCAACGTCTCGGCATCAGTATGTGCTTGGGGATACAACCTCCTGTCTTGC TTGGACTCTGTATCCGTATCACGAGCCCGGTCTGCTAACATTGAGCCCCTGCCCAGAAAACCGCCAACACCGTGT CCTCCGCGCTTCATTCTGGGTCAAGCTCACCTTCGTCATCGTCGAGGTGGCTCTTGTCATCGTCTTCATCGCCAA CTCGGCGCGTCACGAGCCCAACGTCGCCGCCGTCTTCGAGTGGATCGTCGCCTTCATCTTCACCTTCTACATCCT CTCCTTCGTCATCGATCTCTACCCGGCCATCCGCACCAAGGAGTACAGCTCCCGCTTCGAGAAGCCCGGTGACGT TGAAGAGGCCGCCACACCCGCTCCCGCCGGCAGCGGCCCCACTCTCCACCAAGGCGAATATCCCGTTGTGGACAG GAATGCCGCCAACTTCTGA |