© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1880 |
| Gene name | |
| Location | Contig_143:5318..6316 |
| Strand | + |
| Gene length (bp) | 998 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20520 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | 3.3E-19 | 222 | 261 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7R6|BIG1_SCHPO | Protein big1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=big1 PE=3 SV=1 | 217 | 260 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 224 | 246 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1880 MRPHSILGTLTLSSVGFALSDSSAWLVASTSRFQDAGSHNQIQTSSEALKHTNEILSACPTDKYLIITQPGIRAK DLRRADGCSMPHLCRATDEVRMKGRFSVAEVVGSVDHAMLSEYIRSGCDKKGKPVVIDEIHLATLSSDDRARTLF ENDATLSGKLQAVAKHKSYTILLLSAPSEPAYQADFDDSVHMVVKRDMNAVPLLRRDNNTQWENLPLFQKYQFFT PGIFMGIFVALVLLSILSVGLRALSSLEVSYGAFEKEMGPAAQKKQQ* |
| Coding | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA |
| Transcript | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA |
| Gene | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTGCGCACCGCTCTCCAAGGCAGCTCGTCACTCCTTCACAAGCTAATCCCGTCAC CTCCCCAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAACATACCAATGAG ATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAAGATCTCCGCAGA GCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGCTTCAGCGTTGCC GAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAGAAGGGCAAGCCA GTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTTGAGAATGGTGCG ATTTTACCTCCAACACTTGTAAAGCCAGTTTCTTGACTTACAGAGGACCAGATGCAACTCTCTCCGGCAAACTGC AGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCGGCTCCGAGCGAGCCAGCCTATCAAGCCGACT TCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCTGTGCCTCTACTCCGCAGGGATAATAATACGC AGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACCCCAGGTATACCCTCTTTTTTTTCCTCGCTCA GCACGACACCACGCAATTGACACGGCGTCACAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAA TTCTCAGCGTCGGTTTGAGGGCCCTTTCCAGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGG CTGCGCAGAAGAAGCAGCAGTGA |