Protein ID | Hirsu2|1880 |
Gene name | |
Location | Contig_143:5318..6316 |
Strand | + |
Gene length (bp) | 998 |
Transcript length (bp) | 819 |
Coding sequence length (bp) | 819 |
Protein length (aa) | 273 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20520 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | 3.3E-19 | 222 | 261 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9Y7R6|BIG1_SCHPO | Protein big1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=big1 PE=3 SV=1 | 217 | 260 | 2.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0738 | 0.0965 | 0.1002 | 0.1095 | 0.1596 | 0.0112 | 0.8479 | 0.572 | 0.3958 | 0.0182 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 20 | 0.781501 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 224 | 246 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1856 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1880 MRPHSILGTLTLSSVGFALSDSSAWLVASTSRFQDAGSHNQIQTSSEALKHTNEILSACPTDKYLIITQPGIRAK DLRRADGCSMPHLCRATDEVRMKGRFSVAEVVGSVDHAMLSEYIRSGCDKKGKPVVIDEIHLATLSSDDRARTLF ENDATLSGKLQAVAKHKSYTILLLSAPSEPAYQADFDDSVHMVVKRDMNAVPLLRRDNNTQWENLPLFQKYQFFT PGIFMGIFVALVLLSILSVGLRALSSLEVSYGAFEKEMGPAAQKKQQ* |
Coding | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA |
Transcript | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA |
Gene | >Hirsu2|1880 ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG CTCGTAGCATCTACGTCAAGGTGCGCACCGCTCTCCAAGGCAGCTCGTCACTCCTTCACAAGCTAATCCCGTCAC CTCCCCAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAACATACCAATGAG ATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAAGATCTCCGCAGA GCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGCTTCAGCGTTGCC GAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAGAAGGGCAAGCCA GTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTTGAGAATGGTGCG ATTTTACCTCCAACACTTGTAAAGCCAGTTTCTTGACTTACAGAGGACCAGATGCAACTCTCTCCGGCAAACTGC AGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCGGCTCCGAGCGAGCCAGCCTATCAAGCCGACT TCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCTGTGCCTCTACTCCGCAGGGATAATAATACGC AGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACCCCAGGTATACCCTCTTTTTTTTCCTCGCTCA GCACGACACCACGCAATTGACACGGCGTCACAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAA TTCTCAGCGTCGGTTTGAGGGCCCTTTCCAGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGG CTGCGCAGAAGAAGCAGCAGTGA |