Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1880
Gene name
LocationContig_143:5318..6316
Strand+
Gene length (bp)998
Transcript length (bp)819
Coding sequence length (bp)819
Protein length (aa) 273

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7R6|BIG1_SCHPO Protein big1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=big1 PE=3 SV=1 217 260 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 224 246 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1880
MRPHSILGTLTLSSVGFALSDSSAWLVASTSRFQDAGSHNQIQTSSEALKHTNEILSACPTDKYLIITQPGIRAK
DLRRADGCSMPHLCRATDEVRMKGRFSVAEVVGSVDHAMLSEYIRSGCDKKGKPVVIDEIHLATLSSDDRARTLF
ENDATLSGKLQAVAKHKSYTILLLSAPSEPAYQADFDDSVHMVVKRDMNAVPLLRRDNNTQWENLPLFQKYQFFT
PGIFMGIFVALVLLSILSVGLRALSSLEVSYGAFEKEMGPAAQKKQQ*
Coding >Hirsu2|1880
ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG
CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA
CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA
GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC
TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG
AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT
GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG
GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT
GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC
CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC
AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA
Transcript >Hirsu2|1880
ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG
CTCGTAGCATCTACGTCAAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAA
CATACCAATGAGATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAA
GATCTCCGCAGAGCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGC
TTCAGCGTTGCCGAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAG
AAGGGCAAGCCAGTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTT
GAGAATGATGCAACTCTCTCCGGCAAACTGCAGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCG
GCTCCGAGCGAGCCAGCCTATCAAGCCGACTTCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCT
GTGCCTCTACTCCGCAGGGATAATAATACGCAGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACC
CCAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAATTCTCAGCGTCGGTTTGAGGGCCCTTTCC
AGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGGCTGCGCAGAAGAAGCAGCAGTGA
Gene >Hirsu2|1880
ATGCGTCCTCACTCGATACTCGGTACGCTGACGCTTTCGAGCGTTGGGTTCGCCTTGTCGGACTCGTCCGCCTGG
CTCGTAGCATCTACGTCAAGGTGCGCACCGCTCTCCAAGGCAGCTCGTCACTCCTTCACAAGCTAATCCCGTCAC
CTCCCCAGGTTCCAAGATGCCGGCAGCCACAACCAAATTCAGACGAGCTCTGAAGCCCTGAAACATACCAATGAG
ATACTTTCAGCGTGTCCGACGGACAAATACCTCATCATCACGCAGCCTGGCATTCGCGCCAAAGATCTCCGCAGA
GCCGACGGCTGCTCCATGCCACACCTCTGCCGAGCCACTGATGAGGTTCGCATGAAGGGCCGCTTCAGCGTTGCC
GAAGTCGTTGGCAGCGTGGACCACGCCATGCTCTCGGAATATATCAGGTCGGGGTGCGATAAGAAGGGCAAGCCA
GTCGTCATCGACGAGATTCACCTGGCAACCTTGTCTTCTGATGACAGGGCTCGTACTCTGTTTGAGAATGGTGCG
ATTTTACCTCCAACACTTGTAAAGCCAGTTTCTTGACTTACAGAGGACCAGATGCAACTCTCTCCGGCAAACTGC
AGGCCGTTGCGAAGCACAAAAGCTACACAATCCTGCTCTTGTCGGCTCCGAGCGAGCCAGCCTATCAAGCCGACT
TCGACGATTCCGTCCATATGGTGGTGAAGCGTGACATGAACGCTGTGCCTCTACTCCGCAGGGATAATAATACGC
AGTGGGAAAACCTCCCGCTTTTCCAGAAGTACCAGTTTTTCACCCCAGGTATACCCTCTTTTTTTTCCTCGCTCA
GCACGACACCACGCAATTGACACGGCGTCACAGGCATCTTTATGGGTATCTTCGTGGCGCTCGTCCTCCTATCAA
TTCTCAGCGTCGGTTTGAGGGCCCTTTCCAGTCTGGAGGTCTCGTATGGCGCATTCGAGAAGGAAATGGGTCCGG
CTGCGCAGAAGAAGCAGCAGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail