© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1859 |
| Gene name | |
| Location | Contig_1422:208..708 |
| Strand | + |
| Gene length (bp) | 500 |
| Transcript length (bp) | 426 |
| Coding sequence length (bp) | 426 |
| Protein length (aa) | 142 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10270 | MMgT | Membrane magnesium transporter | 3.9E-31 | 10 | 131 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.1895 | 0.253 | 0.1022 | 0.1182 | 0.3346 | 0.0385 | 0.5927 | 0.3403 | 0.6109 | 0.0815 |
| Orthofinder run ID | 4 |
| Orthogroup | 1847 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1859 MTWTSRSISLIGLSILVHAWYSAKEHAALSSTFMKHEISSHGQHHSGPSLPTDICVETVLSTLIVCLGLVLGSQQ LRPIQWHVWAGKIERDGDAGFSDGSGDVDKEYHGSPFGILDSRPGFVDIRKQRRDFVSWAKSGRRG* |
| Coding | >Hirsu2|1859 ATGACGTGGACGTCGCGGTCAATCAGTCTGATCGGTCTTTCGATTCTGGTCCATGCCTGGTATTCAGCCAAAGAA CATGCCGCTCTCTCCTCTACGTTTATGAAGCACGAAATATCTTCCCATGGGCAGCATCATTCGGGGCCGTCGCTT CCGACGGACATCTGTGTCGAGACCGTATTGTCGACGTTGATCGTGTGCCTTGGCCTAGTTCTCGGATCTCAACAG TTGCGACCTATTCAGTGGCATGTGTGGGCCGGTAAGATTGAGCGGGATGGCGATGCTGGATTCAGCGACGGTTCA GGTGACGTCGACAAAGAATATCACGGCAGTCCATTCGGAATCCTCGACAGCCGTCCCGGATTCGTCGACATTCGC AAACAGCGGCGCGACTTCGTCAGCTGGGCAAAGAGCGGGCGCCGAGGCTGA |
| Transcript | >Hirsu2|1859 ATGACGTGGACGTCGCGGTCAATCAGTCTGATCGGTCTTTCGATTCTGGTCCATGCCTGGTATTCAGCCAAAGAA CATGCCGCTCTCTCCTCTACGTTTATGAAGCACGAAATATCTTCCCATGGGCAGCATCATTCGGGGCCGTCGCTT CCGACGGACATCTGTGTCGAGACCGTATTGTCGACGTTGATCGTGTGCCTTGGCCTAGTTCTCGGATCTCAACAG TTGCGACCTATTCAGTGGCATGTGTGGGCCGGTAAGATTGAGCGGGATGGCGATGCTGGATTCAGCGACGGTTCA GGTGACGTCGACAAAGAATATCACGGCAGTCCATTCGGAATCCTCGACAGCCGTCCCGGATTCGTCGACATTCGC AAACAGCGGCGCGACTTCGTCAGCTGGGCAAAGAGCGGGCGCCGAGGCTGA |
| Gene | >Hirsu2|1859 ATGACGTGGACGTCGCGGTCAATCAGTCTGATCGGTCTTTCGATTCTGGTCCATGCGTGAGTTGACCTGTTCCTC GCCCCAGCGCCACCCCCGAGAGCAGGCCCTCATATCGCTGAACATGGCATGTTAGCTGGTATTCAGCCAAAGAAC ATGCCGCTCTCTCCTCTACGTTTATGAAGCACGAAATATCTTCCCATGGGCAGCATCATTCGGGGCCGTCGCTTC CGACGGACATCTGTGTCGAGACCGTATTGTCGACGTTGATCGTGTGCCTTGGCCTAGTTCTCGGATCTCAACAGT TGCGACCTATTCAGTGGCATGTGTGGGCCGGTAAGATTGAGCGGGATGGCGATGCTGGATTCAGCGACGGTTCAG GTGACGTCGACAAAGAATATCACGGCAGTCCATTCGGAATCCTCGACAGCCGTCCCGGATTCGTCGACATTCGCA AACAGCGGCGCGACTTCGTCAGCTGGGCAAAGAGCGGGCGCCGAGGCTGA |