Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1856
Gene name
LocationContig_1420:3769..5096
Strand+
Gene length (bp)1327
Transcript length (bp)1002
Coding sequence length (bp)1002
Protein length (aa) 334

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07993 NAD_binding_4 Male sterility protein 8.5E-05 124 194

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 58 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1856
MILFTSAQKPMLRAGKGTGGSRENRLFANGVSWENSLWRIIADELLLGGGAPQPLAAGTVYASPTIAMLAAAVSA
LAEGRVLAESSSHDGTERMQELYGLNAADMPLFGRQPCRRPAEGLVVLLTESTGSLGSCTLDSLMRNPRVSQIYY
LNRGRGSRERQERAQTARKLGPLTSEVECLDADLSQPCFGLSGQIAGVRRIIDFAAHSAYGARVLFISSVGAVGG
LAGDVTEQVYRDWEASISVIICRAGQVAGPLTETGSWPKQEWLPSLVASSKYLGLLPASLGRMNTVDWIPVDVLA
QSLAEVVVNPEAASAQAPSAAAVYHAANPRRIS*
Coding >Hirsu2|1856
ATGATCCTCTTTACCTCTGCGCAAAAGCCCATGCTGCGGGCCGGCAAAGGCACGGGTGGCAGCCGCGAGAACCGC
CTGTTTGCCAATGGCGTCAGCTGGGAGAACAGCCTCTGGCGCATCATTGCCGATGAGCTGCTGCTGGGCGGCGGC
GCACCACAGCCGCTGGCGGCCGGGACAGTCTACGCCTCGCCCACCATCGCCATGCTGGCCGCGGCTGTGTCGGCC
CTCGCTGAGGGTAGAGTGCTCGCGGAGTCATCGAGCCACGACGGAACGGAGAGGATGCAGGAGCTCTACGGCCTC
AACGCCGCGGACATGCCGCTCTTTGGCCGACAGCCATGTCGGCGGCCAGCGGAAGGCTTGGTCGTCTTGCTCACT
GAATCCACCGGCTCTCTTGGCTCGTGCACGCTTGACAGTCTGATGCGCAACCCGCGTGTCTCGCAGATATACTAC
CTCAACCGGGGTCGGGGGAGCCGCGAGCGCCAAGAGAGGGCCCAAACCGCGAGAAAGCTCGGCCCGCTCACCTCC
GAGGTCGAGTGCCTAGATGCGGACTTGTCGCAGCCGTGCTTTGGCCTTTCTGGGCAGATCGCCGGCGTTCGGCGC
ATCATCGACTTCGCGGCGCACTCGGCCTACGGTGCACGGGTCTTGTTCATCTCCAGCGTCGGCGCTGTAGGGGGT
CTCGCCGGCGACGTTACCGAGCAGGTCTACCGCGACTGGGAGGCCAGCATCTCGGTCATAATCTGCCGCGCAGGT
CAGGTGGCCGGGCCCCTTACCGAGACGGGCAGCTGGCCGAAGCAGGAGTGGCTCCCCAGCCTGGTGGCCTCGTCC
AAATACCTCGGTCTGCTTCCGGCTTCCCTGGGTAGAATGAACACCGTTGACTGGATCCCGGTGGACGTCCTGGCG
CAGAGCTTGGCTGAGGTGGTCGTGAACCCCGAAGCCGCGTCCGCCCAGGCCCCGTCCGCGGCCGCCGTCTACCAC
GCGGCGAACCCCAGACGCATCAGCTAG
Transcript >Hirsu2|1856
ATGATCCTCTTTACCTCTGCGCAAAAGCCCATGCTGCGGGCCGGCAAAGGCACGGGTGGCAGCCGCGAGAACCGC
CTGTTTGCCAATGGCGTCAGCTGGGAGAACAGCCTCTGGCGCATCATTGCCGATGAGCTGCTGCTGGGCGGCGGC
GCACCACAGCCGCTGGCGGCCGGGACAGTCTACGCCTCGCCCACCATCGCCATGCTGGCCGCGGCTGTGTCGGCC
CTCGCTGAGGGTAGAGTGCTCGCGGAGTCATCGAGCCACGACGGAACGGAGAGGATGCAGGAGCTCTACGGCCTC
AACGCCGCGGACATGCCGCTCTTTGGCCGACAGCCATGTCGGCGGCCAGCGGAAGGCTTGGTCGTCTTGCTCACT
GAATCCACCGGCTCTCTTGGCTCGTGCACGCTTGACAGTCTGATGCGCAACCCGCGTGTCTCGCAGATATACTAC
CTCAACCGGGGTCGGGGGAGCCGCGAGCGCCAAGAGAGGGCCCAAACCGCGAGAAAGCTCGGCCCGCTCACCTCC
GAGGTCGAGTGCCTAGATGCGGACTTGTCGCAGCCGTGCTTTGGCCTTTCTGGGCAGATCGCCGGCGTTCGGCGC
ATCATCGACTTCGCGGCGCACTCGGCCTACGGTGCACGGGTCTTGTTCATCTCCAGCGTCGGCGCTGTAGGGGGT
CTCGCCGGCGACGTTACCGAGCAGGTCTACCGCGACTGGGAGGCCAGCATCTCGGTCATAATCTGCCGCGCAGGT
CAGGTGGCCGGGCCCCTTACCGAGACGGGCAGCTGGCCGAAGCAGGAGTGGCTCCCCAGCCTGGTGGCCTCGTCC
AAATACCTCGGTCTGCTTCCGGCTTCCCTGGGTAGAATGAACACCGTTGACTGGATCCCGGTGGACGTCCTGGCG
CAGAGCTTGGCTGAGGTGGTCGTGAACCCCGAAGCCGCGTCCGCCCAGGCCCCGTCCGCGGCCGCCGTCTACCAC
GCGGCGAACCCCAGACGCATCAGCTAG
Gene >Hirsu2|1856
ATGATCCTCTTTACCTCTGCGCAAAAGCCCATGCTGCGGGCCGGCAAAGGCACGGTACAGAGGAAGATGACATGA
GACCTGTACCGGGTCGAGCTGGACGGCCTGTATGAGAAGGGTGGCAGCCGCGAGAACCGCCTGTTTGCCAATGGC
GTCAGCTGGGAGAACAGCCTCTGGCGCATCATTGCCGAGTGCACGGATATTTCCAGTCCACACAGTCTCCCGAGA
CACCGACCTGTTCGCTATCGGGCTGGATTCGCTGCAGGGGAGGCTAATTGCCAAGCACACCAGTGAGCTGCTGCT
GGGCGGCGGCGCACCACAGCCGCTGGCGGCCGGGACAGTCTACGCCTCGCCCACCATCGCCATGCTGGCCGCGGC
TGTGTCGGCCCTCGCTGAGGGTAGAGTGCTCGCGGAGTCATCGAGCCACGACGGAACGGAGAGGATGCAGGAGCT
CTACGGCCTCAACGCCGCGGACATGCCGCTCTTTGGCCGACAGCCATGTCGGCGGCCAGCGGAAGGCTTGGTCGT
CTTGCTCACTGAATCCACCGGCTCTCTTGGCTCGTGCACGCTTGACAGTCTGATGCGCAACCCGCGTGTCTCGCA
GATATACTACCTCAACCGGGGTCGGGGGAGCCGCGAGCGCCAAGAGAGGGCCCAAACCGCGAGAAAGCTCGGCCC
GCTCACCTCCGAGGTCGAGTGCCTAGATGCGGACTTGTCGCAGCCGTGCTTTGGCCTTTCTGGGCAGGTATACGG
CCGACTCCTGGCGCAGGTGACGGACGTCGTCCACAACGCCTGGCAGGTCAACTTCAACCTGTCCGTTGGCTCCTT
CGCGGCCTAGATCGCCGGCGTTCGGCGCATCATCGACTTCGCGGCGCACTCGGCCTACGGTGCACGGGTCTTGTT
CATCTCCAGCGTCGGCGCTGTAGGGGGTCTCGCCGGCGACGTTACCGAGCAGGTCTACCGCGACTGGTAAGTGCC
GCAGCCGACTGGTTACGGACAGTCGAAATTCGTCGCCGAGCGCCTCGTCGACACGGCTGCCAGGGAGGCCAGCAT
CTCGGTCATAATCTGCCGCGCAGGTCAGGTGGCCGGGCCCCTTACCGAGACGGGCAGCTGGCCGAAGCAGGAGTG
GCTCCCCAGCCTGGTGGCCTCGTCCAAATACCTCGGTCTGCTTCCGGCTTCCCTGGGTAGAATGAACACCGTTGA
CTGGATCCCGGTGGACGTCCTGGCGCAGAGCTTGGCTGAGGTGGTCGTGAACCCCGAAGCCGCGTCCGCCCAGGC
CCCGTCCGCGGCCGCCGTCTACCACGCGGCGAACCCCAGACGCATCAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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