Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1827
Gene name
LocationContig_1411:5275..5997
Strand+
Gene length (bp)722
Transcript length (bp)516
Coding sequence length (bp)516
Protein length (aa) 172

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05255 UPF0220 Uncharacterised protein family (UPF0220) 1.5E-66 3 165

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O43073|YGW2_SCHPO UPF0220 protein C8D2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi063 PE=3 SV=1 3 171 6.0E-45
sp|Q12016|VPS68_YEAST Vacuolar protein sorting-associated protein 68 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS68 PE=1 SV=1 3 171 3.0E-44
sp|Q54T60|TMM50_DICDI Transmembrane protein 50 homolog OS=Dictyostelium discoideum GN=tmem50 PE=3 SV=1 28 128 4.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 17 39 22
2 59 78 19
3 99 121 22
4 136 158 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1827
MEDQRLWKFRRPDWLNSAWARSAGVYGAGALFSVAFYVMLDSAVWSKSARNGSNVHVRFVDWLPLIFSSLGMLII
NSVEKQRLSADSFSYSGSGVAWKARVVLFLGFAALAGGMAGGVTVFVLKFVVPGVAMPALGMGIENIVSNALVGF
SSVVLWISQNMEDEYSYNLAI*
Coding >Hirsu2|1827
ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC
TACGGCGCCGGGGCGCTGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCCGC
AACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCATC
AACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCCGC
GTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGTTC
GTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCTTC
AGCTCCGTCGTGCTCTGGATCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA
Transcript >Hirsu2|1827
ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC
TACGGCGCCGGGGCGCTGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCCGC
AACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCATC
AACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCCGC
GTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGTTC
GTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCTTC
AGCTCCGTCGTGCTCTGGATCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA
Gene >Hirsu2|1827
ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC
TACGGCGCCGGGGCGCTGGTGAGTCCCTCCCTTCCGTCGTCGGCCTCGTGGCGGTTCGACGTGGCAGCCATGGTC
GTCGTCGTCGCCGTCGTCGTCCCTGTCCTCGCCTCGACCGCATCCGTCTGCCCCCCGTGCCCGCGCCGGCTGCTG
ACCAGAGAGGCGCGGCCTAGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCC
GCAACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCA
TCAACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCC
GCGTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGT
TCGTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCT
TCAGGTACGCTCTTCGCTGCGCCCGCCGTCGCCCCTGCCCCGCTCACGCCTGCCGCAGCTCCGTCGTGCTCTGGA
TCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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