© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1827 |
| Gene name | |
| Location | Contig_1411:5275..5997 |
| Strand | + |
| Gene length (bp) | 722 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05255 | UPF0220 | Uncharacterised protein family (UPF0220) | 1.3E-65 | 3 | 165 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O43073|YGW2_SCHPO | UPF0220 protein C8D2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi063 PE=3 SV=1 | 3 | 171 | 6.0E-45 |
| sp|Q12016|VPS68_YEAST | Vacuolar protein sorting-associated protein 68 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS68 PE=1 SV=1 | 3 | 171 | 3.0E-44 |
| sp|Q54T60|TMM50_DICDI | Transmembrane protein 50 homolog OS=Dictyostelium discoideum GN=tmem50 PE=3 SV=1 | 28 | 128 | 4.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
| 2 | 59 | 78 | 19 |
| 3 | 99 | 121 | 22 |
| 4 | 136 | 158 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1827 MEDQRLWKFRRPDWLNSAWARSAGVYGAGALFSVAFYVMLDSAVWSKSARNGSNVHVRFVDWLPLIFSSLGMLII NSVEKQRLSADSFSYSGSGVAWKARVVLFLGFAALAGGMAGGVTVFVLKFVVPGVAMPALGMGIENIVSNALVGF SSVVLWISQNMEDEYSYNLAI* |
| Coding | >Hirsu2|1827 ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC TACGGCGCCGGGGCGCTGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCCGC AACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCATC AACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCCGC GTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGTTC GTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCTTC AGCTCCGTCGTGCTCTGGATCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA |
| Transcript | >Hirsu2|1827 ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC TACGGCGCCGGGGCGCTGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCCGC AACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCATC AACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCCGC GTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGTTC GTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCTTC AGCTCCGTCGTGCTCTGGATCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA |
| Gene | >Hirsu2|1827 ATGGAGGACCAGCGCCTCTGGAAGTTCAGGAGGCCCGACTGGCTGAACAGTGCCTGGGCCCGCAGCGCTGGCGTC TACGGCGCCGGGGCGCTGGTGAGTCCCTCCCTTCCGTCGTCGGCCTCGTGGCGGTTCGACGTGGCAGCCATGGTC GTCGTCGTCGCCGTCGTCGTCCCTGTCCTCGCCTCGACCGCATCCGTCTGCCCCCCGTGCCCGCGCCGGCTGCTG ACCAGAGAGGCGCGGCCTAGTTCTCCGTCGCCTTCTACGTCATGCTCGACTCGGCCGTCTGGTCCAAGTCGGCCC GCAACGGGTCCAACGTCCACGTCAGATTCGTCGACTGGCTGCCCCTCATCTTCAGCAGCCTCGGCATGCTCATCA TCAACTCGGTCGAGAAGCAGCGGCTCAGCGCCGACTCCTTCAGCTACAGCGGCTCCGGCGTCGCCTGGAAGGCCC GCGTCGTGCTCTTCCTCGGCTTCGCGGCCCTCGCCGGCGGCATGGCCGGCGGCGTCACCGTCTTCGTCCTCAAGT TCGTCGTCCCGGGCGTCGCCATGCCCGCCCTGGGCATGGGCATCGAGAATATCGTTAGCAACGCCCTCGTCGGCT TCAGGTACGCTCTTCGCTGCGCCCGCCGTCGCCCCTGCCCCGCTCACGCCTGCCGCAGCTCCGTCGTGCTCTGGA TCAGCCAGAACATGGAAGACGAGTACTCGTACAACCTGGCCATATAA |