© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1826 |
| Gene name | |
| Location | Contig_1411:1717..2941 |
| Strand | - |
| Gene length (bp) | 1224 |
| Transcript length (bp) | 1224 |
| Coding sequence length (bp) | 1224 |
| Protein length (aa) | 408 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6FNP6|YNF8_CANGA | Vacuolar membrane protein CAGL0J10076g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0J10076g PE=3 SV=1 | 152 | 272 | 4.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide|Transmembrane domain | 0.1131 | 0.1387 | 0.5159 | 0.432 | 0.1073 | 0.0103 | 0.1609 | 0.5044 | 0.1824 | 0.0036 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 29 | 0.976658 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 171 | 193 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1833 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1826 MRPPSSLPPSALLLSTLASVAILSLPVMAQRVGNQPQLPAVSQSPAGLPAPSPTPASPQQASNPPSRPSSNGQRP PSSDRQQPSPPSEASDPPTPTPVTPTPTPTPARATPSDDKANPTITGPSSVSSGSELGAFPTLTRTNAIPQYPEP SVPPTQDAPFMQHSNLPDGTVFIVVGAVLGALGLSILLWRGIVSLLLHRSVKRAAMAQHTTNPKAGFPAPPAPFY KYTDQESSMSLGAGAAGAVPGRGVRRTNRGPIPSATPSHSNLFFSPTAVPNAAGARNSAFLPSGFYAAGAGSPAV NPANAISLHNLRPDSRGHYANASRHTLAGSPPDSPHYPARRDPSAMSTSSLHLNMPPGQQRAPSAYLEDLLADDP GAFPPQHMPPTSNGPSSTASLAGRADSLPHRI* |
| Coding | >Hirsu2|1826 ATGCGGCCGCCCAGCTCGTTGCCGCCCTCGGCTCTGCTGCTCTCGACTCTGGCCTCGGTCGCCATCTTGTCCCTC CCCGTCATGGCTCAGAGAGTCGGCAACCAGCCTCAGCTCCCGGCCGTCAGCCAAAGCCCCGCCGGCTTGCCCGCC CCGTCGCCTACTCCCGCGAGCCCGCAACAAGCGTCGAATCCGCCGTCCCGTCCGAGCAGCAACGGCCAGAGACCG CCCAGCTCGGACCGGCAGCAGCCCTCGCCGCCGTCCGAGGCCTCGGACCCTCCGACGCCGACGCCCGTCACGCCG ACGCCGACGCCGACGCCCGCCCGCGCCACGCCCAGCGACGACAAGGCGAACCCTACAATTACCGGCCCCAGCTCG GTCAGCTCCGGCAGCGAACTCGGCGCCTTCCCGACCCTGACGAGGACCAACGCGATCCCCCAGTATCCCGAACCC AGCGTCCCGCCCACCCAGGACGCCCCCTTTATGCAGCACTCCAATCTGCCCGACGGCACCGTCTTTATCGTCGTC GGCGCCGTCCTCGGCGCCCTGGGACTCTCCATCCTGCTCTGGCGCGGCATCGTCAGCCTTCTCCTCCATCGGTCC GTCAAACGCGCGGCCATGGCCCAACATACCACCAACCCCAAGGCCGGCTTCCCGGCGCCGCCCGCGCCCTTCTAC AAGTACACCGACCAGGAATCCAGCATGTCGCTGGGCGCCGGCGCCGCCGGCGCCGTCCCCGGCCGCGGCGTTCGA CGCACCAACCGGGGGCCCATTCCTTCCGCCACCCCGAGCCACTCCAACCTCTTCTTCTCGCCCACGGCCGTCCCC AACGCCGCCGGCGCCCGCAACTCGGCCTTCCTGCCCTCGGGCTTCTACGCCGCCGGCGCCGGCTCGCCCGCCGTC AACCCCGCCAACGCCATCAGCCTGCACAACCTGCGCCCGGATTCCAGGGGCCACTACGCCAATGCGTCCCGCCAC ACGCTGGCGGGCTCGCCGCCCGACTCGCCCCATTATCCGGCGCGCCGGGACCCCAGCGCCATGAGCACCAGCTCT CTGCACCTCAACATGCCGCCCGGCCAACAACGAGCACCTAGTGCGTACCTCGAAGACCTCCTGGCCGACGACCCG GGCGCCTTCCCGCCGCAGCACATGCCGCCCACGTCCAACGGCCCGAGCAGCACGGCGAGCCTCGCGGGCAGGGCC GACAGCCTGCCCCACCGGATTTGA |
| Transcript | >Hirsu2|1826 ATGCGGCCGCCCAGCTCGTTGCCGCCCTCGGCTCTGCTGCTCTCGACTCTGGCCTCGGTCGCCATCTTGTCCCTC CCCGTCATGGCTCAGAGAGTCGGCAACCAGCCTCAGCTCCCGGCCGTCAGCCAAAGCCCCGCCGGCTTGCCCGCC CCGTCGCCTACTCCCGCGAGCCCGCAACAAGCGTCGAATCCGCCGTCCCGTCCGAGCAGCAACGGCCAGAGACCG CCCAGCTCGGACCGGCAGCAGCCCTCGCCGCCGTCCGAGGCCTCGGACCCTCCGACGCCGACGCCCGTCACGCCG ACGCCGACGCCGACGCCCGCCCGCGCCACGCCCAGCGACGACAAGGCGAACCCTACAATTACCGGCCCCAGCTCG GTCAGCTCCGGCAGCGAACTCGGCGCCTTCCCGACCCTGACGAGGACCAACGCGATCCCCCAGTATCCCGAACCC AGCGTCCCGCCCACCCAGGACGCCCCCTTTATGCAGCACTCCAATCTGCCCGACGGCACCGTCTTTATCGTCGTC GGCGCCGTCCTCGGCGCCCTGGGACTCTCCATCCTGCTCTGGCGCGGCATCGTCAGCCTTCTCCTCCATCGGTCC GTCAAACGCGCGGCCATGGCCCAACATACCACCAACCCCAAGGCCGGCTTCCCGGCGCCGCCCGCGCCCTTCTAC AAGTACACCGACCAGGAATCCAGCATGTCGCTGGGCGCCGGCGCCGCCGGCGCCGTCCCCGGCCGCGGCGTTCGA CGCACCAACCGGGGGCCCATTCCTTCCGCCACCCCGAGCCACTCCAACCTCTTCTTCTCGCCCACGGCCGTCCCC AACGCCGCCGGCGCCCGCAACTCGGCCTTCCTGCCCTCGGGCTTCTACGCCGCCGGCGCCGGCTCGCCCGCCGTC AACCCCGCCAACGCCATCAGCCTGCACAACCTGCGCCCGGATTCCAGGGGCCACTACGCCAATGCGTCCCGCCAC ACGCTGGCGGGCTCGCCGCCCGACTCGCCCCATTATCCGGCGCGCCGGGACCCCAGCGCCATGAGCACCAGCTCT CTGCACCTCAACATGCCGCCCGGCCAACAACGAGCACCTAGTGCGTACCTCGAAGACCTCCTGGCCGACGACCCG GGCGCCTTCCCGCCGCAGCACATGCCGCCCACGTCCAACGGCCCGAGCAGCACGGCGAGCCTCGCGGGCAGGGCC GACAGCCTGCCCCACCGGATTTGA |
| Gene | >Hirsu2|1826 ATGCGGCCGCCCAGCTCGTTGCCGCCCTCGGCTCTGCTGCTCTCGACTCTGGCCTCGGTCGCCATCTTGTCCCTC CCCGTCATGGCTCAGAGAGTCGGCAACCAGCCTCAGCTCCCGGCCGTCAGCCAAAGCCCCGCCGGCTTGCCCGCC CCGTCGCCTACTCCCGCGAGCCCGCAACAAGCGTCGAATCCGCCGTCCCGTCCGAGCAGCAACGGCCAGAGACCG CCCAGCTCGGACCGGCAGCAGCCCTCGCCGCCGTCCGAGGCCTCGGACCCTCCGACGCCGACGCCCGTCACGCCG ACGCCGACGCCGACGCCCGCCCGCGCCACGCCCAGCGACGACAAGGCGAACCCTACAATTACCGGCCCCAGCTCG GTCAGCTCCGGCAGCGAACTCGGCGCCTTCCCGACCCTGACGAGGACCAACGCGATCCCCCAGTATCCCGAACCC AGCGTCCCGCCCACCCAGGACGCCCCCTTTATGCAGCACTCCAATCTGCCCGACGGCACCGTCTTTATCGTCGTC GGCGCCGTCCTCGGCGCCCTGGGACTCTCCATCCTGCTCTGGCGCGGCATCGTCAGCCTTCTCCTCCATCGGTCC GTCAAACGCGCGGCCATGGCCCAACATACCACCAACCCCAAGGCCGGCTTCCCGGCGCCGCCCGCGCCCTTCTAC AAGTACACCGACCAGGAATCCAGCATGTCGCTGGGCGCCGGCGCCGCCGGCGCCGTCCCCGGCCGCGGCGTTCGA CGCACCAACCGGGGGCCCATTCCTTCCGCCACCCCGAGCCACTCCAACCTCTTCTTCTCGCCCACGGCCGTCCCC AACGCCGCCGGCGCCCGCAACTCGGCCTTCCTGCCCTCGGGCTTCTACGCCGCCGGCGCCGGCTCGCCCGCCGTC AACCCCGCCAACGCCATCAGCCTGCACAACCTGCGCCCGGATTCCAGGGGCCACTACGCCAATGCGTCCCGCCAC ACGCTGGCGGGCTCGCCGCCCGACTCGCCCCATTATCCGGCGCGCCGGGACCCCAGCGCCATGAGCACCAGCTCT CTGCACCTCAACATGCCGCCCGGCCAACAACGAGCACCTAGTGCGTACCTCGAAGACCTCCTGGCCGACGACCCG GGCGCCTTCCCGCCGCAGCACATGCCGCCCACGTCCAACGGCCCGAGCAGCACGGCGAGCCTCGCGGGCAGGGCC GACAGCCTGCCCCACCGGATTTGA |