Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1810
Gene name
LocationContig_141:8116..8752
Strand+
Gene length (bp)636
Transcript length (bp)636
Coding sequence length (bp)636
Protein length (aa) 212

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05188 MutS_II MutS domain II 7.2E-05 62 189

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O15457|MSH4_HUMAN MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2 63 189 4.0E-12
sp|Q99MT2|MSH4_MOUSE MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1 28 181 3.0E-11
sp|P40965|MSH4_YEAST MutS protein homolog 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH4 PE=1 SV=2 34 188 8.0E-10

GO

GO Term Description Terminal node
GO:0005524 ATP binding Yes
GO:0006298 mismatch repair Yes
GO:0030983 mismatched DNA binding Yes
GO:1901265 nucleoside phosphate binding No
GO:0032559 adenyl ribonucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0006950 response to stress No
GO:0006259 DNA metabolic process No
GO:0003676 nucleic acid binding No
GO:0006281 DNA repair No
GO:0071704 organic substance metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005488 binding No
GO:0044237 cellular metabolic process No
GO:0050896 response to stimulus No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0036094 small molecule binding No
GO:0044260 cellular macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008144 drug binding No
GO:0003674 molecular_function No
GO:0003677 DNA binding No
GO:0032555 purine ribonucleotide binding No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0000166 nucleotide binding No
GO:0043167 ion binding No
GO:0043168 anion binding No
GO:0097367 carbohydrate derivative binding No
GO:0003690 double-stranded DNA binding No
GO:0051716 cellular response to stimulus No
GO:0090304 nucleic acid metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0006974 cellular response to DNA damage stimulus No
GO:0032553 ribonucleotide binding No
GO:0030554 adenyl nucleotide binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0033554 cellular response to stress No
GO:0017076 purine nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 48 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1810
MTRQGEFLEAERRLRAPYTPSVISTRPSTSASRSGTRPSTASGRKSRTTTTSSILGLSDQQNVICALGESRGVTP
SVGVAFVNVTLGEVLLSQICDNQSYVKTIHKIQMNLPSRILFMSTACPPNKPSTLFNLAQELVPEARCDAFDRSA
WSEHEGLNYINKLASPSDVEPVKFALQGKYYSICSFAAVGHRPQISPVFYPNYLADTAGRR*
Coding >Hirsu2|1810
ATGACGCGACAGGGCGAGTTCCTTGAGGCCGAAAGACGCCTCAGAGCTCCCTACACGCCGTCGGTGATCAGCACG
CGGCCGAGCACCTCCGCCTCGCGGTCCGGCACTCGCCCGAGTACTGCTTCGGGTCGCAAATCTCGCACCACGACC
ACATCCTCCATCCTCGGGCTCAGCGACCAACAGAACGTCATCTGCGCTCTTGGCGAGTCCCGAGGCGTGACGCCG
TCGGTTGGTGTGGCCTTCGTCAACGTGACGCTGGGTGAGGTGCTCCTCAGCCAGATATGCGACAACCAATCCTAC
GTCAAGACCATCCACAAGATCCAGATGAACCTACCATCTCGCATCCTTTTCATGTCCACCGCATGCCCGCCGAAC
AAGCCAAGCACATTGTTCAACTTGGCACAAGAGCTGGTTCCAGAGGCCCGCTGCGACGCGTTTGACCGTTCGGCC
TGGTCGGAACACGAAGGTCTCAACTACATAAACAAGCTGGCATCCCCCAGTGACGTCGAGCCTGTCAAGTTTGCC
CTCCAGGGCAAATACTATTCGATTTGCTCTTTTGCCGCAGTAGGCCATCGCCCACAGATCTCGCCCGTTTTCTAC
CCCAACTATCTCGCTGACACCGCGGGCAGGCGATGA
Transcript >Hirsu2|1810
ATGACGCGACAGGGCGAGTTCCTTGAGGCCGAAAGACGCCTCAGAGCTCCCTACACGCCGTCGGTGATCAGCACG
CGGCCGAGCACCTCCGCCTCGCGGTCCGGCACTCGCCCGAGTACTGCTTCGGGTCGCAAATCTCGCACCACGACC
ACATCCTCCATCCTCGGGCTCAGCGACCAACAGAACGTCATCTGCGCTCTTGGCGAGTCCCGAGGCGTGACGCCG
TCGGTTGGTGTGGCCTTCGTCAACGTGACGCTGGGTGAGGTGCTCCTCAGCCAGATATGCGACAACCAATCCTAC
GTCAAGACCATCCACAAGATCCAGATGAACCTACCATCTCGCATCCTTTTCATGTCCACCGCATGCCCGCCGAAC
AAGCCAAGCACATTGTTCAACTTGGCACAAGAGCTGGTTCCAGAGGCCCGCTGCGACGCGTTTGACCGTTCGGCC
TGGTCGGAACACGAAGGTCTCAACTACATAAACAAGCTGGCATCCCCCAGTGACGTCGAGCCTGTCAAGTTTGCC
CTCCAGGGCAAATACTATTCGATTTGCTCTTTTGCCGCAGTAGGCCATCGCCCACAGATCTCGCCCGTTTTCTAC
CCCAACTATCTCGCTGACACCGCGGGCAGGCGATGA
Gene >Hirsu2|1810
ATGACGCGACAGGGCGAGTTCCTTGAGGCCGAAAGACGCCTCAGAGCTCCCTACACGCCGTCGGTGATCAGCACG
CGGCCGAGCACCTCCGCCTCGCGGTCCGGCACTCGCCCGAGTACTGCTTCGGGTCGCAAATCTCGCACCACGACC
ACATCCTCCATCCTCGGGCTCAGCGACCAACAGAACGTCATCTGCGCTCTTGGCGAGTCCCGAGGCGTGACGCCG
TCGGTTGGTGTGGCCTTCGTCAACGTGACGCTGGGTGAGGTGCTCCTCAGCCAGATATGCGACAACCAATCCTAC
GTCAAGACCATCCACAAGATCCAGATGAACCTACCATCTCGCATCCTTTTCATGTCCACCGCATGCCCGCCGAAC
AAGCCAAGCACATTGTTCAACTTGGCACAAGAGCTGGTTCCAGAGGCCCGCTGCGACGCGTTTGACCGTTCGGCC
TGGTCGGAACACGAAGGTCTCAACTACATAAACAAGCTGGCATCCCCCAGTGACGTCGAGCCTGTCAAGTTTGCC
CTCCAGGGCAAATACTATTCGATTTGCTCTTTTGCCGCAGTAGGCCATCGCCCACAGATCTCGCCCGTTTTCTAC
CCCAACTATCTCGCTGACACCGCGGGCAGGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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