Protein ID | Hirsu2|1804 |
Gene name | |
Location | Contig_1408:1143..2118 |
Strand | - |
Gene length (bp) | 975 |
Transcript length (bp) | 975 |
Coding sequence length (bp) | 975 |
Protein length (aa) | 325 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1911 | 0.0693 | 0.926 | 0.1446 | 0.0582 | 0.0047 | 0.415 | 0.1463 | 0.3501 | 0.0026 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 25 | 0.999805 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 8915 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|1804 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1804 MYKHSAFQAVFVALCILLCFRACLAAPAGLEKRRPGRNGPARNLNRYHKSHGIPLVGLADHHDDTPGAPGGHYEN AHGRFSEPTSQLPSSNKGASTWAKYNPFGKKGKDKKSAERSDRNEEQWEEIDLGLWVNDNAQEEVPKSGILDRIK NKPSKKKANKNSAKQGDSEDGTVEQTDIYASVNKNAHKVSKPNFFRTLKNRFFRKNRDKSAAKKGDDEDGTVEEN DVHKSNNEPIYDTIPDPSSFGKTKPVGKKNEGNNDIHMSDEDDIYDFLEDPRSFGQVKPEPFGKNQDNKSAKQSG GEGEASEENDLYMSADGPDIPSPP* |
Coding | >Hirsu2|1804 ATGTACAAGCACTCGGCGTTCCAGGCCGTCTTCGTTGCGCTCTGCATCCTCCTATGCTTCCGCGCCTGTCTGGCG GCCCCGGCTGGCCTCGAAAAACGGAGGCCGGGGAGGAACGGGCCTGCCAGGAATCTCAACCGATATCATAAAAGT CACGGAATCCCTCTTGTCGGCCTAGCCGATCACCACGACGACACCCCTGGCGCTCCTGGCGGCCACTACGAAAAC GCGCACGGGAGGTTTTCGGAACCAACTTCCCAGCTTCCCTCTTCGAACAAAGGCGCTTCCACTTGGGCCAAATAC AACCCGTTCGGGAAGAAGGGCAAGGACAAGAAGAGCGCAGAGCGAAGTGACAGGAATGAGGAACAGTGGGAAGAA ATCGACCTTGGTCTATGGGTCAACGACAACGCCCAGGAGGAAGTTCCAAAATCGGGAATACTTGACAGAATAAAG AACAAGCCTTCCAAGAAGAAGGCGAACAAAAACAGCGCGAAACAAGGCGACAGCGAGGATGGAACTGTGGAACAG ACCGATATCTATGCATCGGTCAACAAGAATGCCCACAAGGTTTCAAAGCCAAATTTTTTTCGTACATTGAAGAAC AGGTTCTTCCGGAAGAATCGGGACAAAAGCGCCGCGAAAAAGGGCGATGACGAGGATGGAACCGTGGAAGAAAAT GACGTTCACAAATCGAACAACGAGCCTATCTACGATACGATTCCAGACCCGAGTTCCTTCGGTAAAACCAAGCCT GTCGGGAAGAAAAACGAGGGAAACAATGACATCCATATGTCGGACGAGGATGATATCTACGATTTTCTTGAAGAT CCGAGGTCCTTCGGTCAAGTCAAACCCGAGCCTTTCGGGAAGAATCAGGATAACAAGAGCGCAAAACAGAGCGGC GGCGAGGGCGAGGCATCGGAAGAAAATGACTTGTATATGTCGGCCGACGGTCCTGATATTCCGTCGCCGCCTTGA |
Transcript | >Hirsu2|1804 ATGTACAAGCACTCGGCGTTCCAGGCCGTCTTCGTTGCGCTCTGCATCCTCCTATGCTTCCGCGCCTGTCTGGCG GCCCCGGCTGGCCTCGAAAAACGGAGGCCGGGGAGGAACGGGCCTGCCAGGAATCTCAACCGATATCATAAAAGT CACGGAATCCCTCTTGTCGGCCTAGCCGATCACCACGACGACACCCCTGGCGCTCCTGGCGGCCACTACGAAAAC GCGCACGGGAGGTTTTCGGAACCAACTTCCCAGCTTCCCTCTTCGAACAAAGGCGCTTCCACTTGGGCCAAATAC AACCCGTTCGGGAAGAAGGGCAAGGACAAGAAGAGCGCAGAGCGAAGTGACAGGAATGAGGAACAGTGGGAAGAA ATCGACCTTGGTCTATGGGTCAACGACAACGCCCAGGAGGAAGTTCCAAAATCGGGAATACTTGACAGAATAAAG AACAAGCCTTCCAAGAAGAAGGCGAACAAAAACAGCGCGAAACAAGGCGACAGCGAGGATGGAACTGTGGAACAG ACCGATATCTATGCATCGGTCAACAAGAATGCCCACAAGGTTTCAAAGCCAAATTTTTTTCGTACATTGAAGAAC AGGTTCTTCCGGAAGAATCGGGACAAAAGCGCCGCGAAAAAGGGCGATGACGAGGATGGAACCGTGGAAGAAAAT GACGTTCACAAATCGAACAACGAGCCTATCTACGATACGATTCCAGACCCGAGTTCCTTCGGTAAAACCAAGCCT GTCGGGAAGAAAAACGAGGGAAACAATGACATCCATATGTCGGACGAGGATGATATCTACGATTTTCTTGAAGAT CCGAGGTCCTTCGGTCAAGTCAAACCCGAGCCTTTCGGGAAGAATCAGGATAACAAGAGCGCAAAACAGAGCGGC GGCGAGGGCGAGGCATCGGAAGAAAATGACTTGTATATGTCGGCCGACGGTCCTGATATTCCGTCGCCGCCTTGA |
Gene | >Hirsu2|1804 ATGTACAAGCACTCGGCGTTCCAGGCCGTCTTCGTTGCGCTCTGCATCCTCCTATGCTTCCGCGCCTGTCTGGCG GCCCCGGCTGGCCTCGAAAAACGGAGGCCGGGGAGGAACGGGCCTGCCAGGAATCTCAACCGATATCATAAAAGT CACGGAATCCCTCTTGTCGGCCTAGCCGATCACCACGACGACACCCCTGGCGCTCCTGGCGGCCACTACGAAAAC GCGCACGGGAGGTTTTCGGAACCAACTTCCCAGCTTCCCTCTTCGAACAAAGGCGCTTCCACTTGGGCCAAATAC AACCCGTTCGGGAAGAAGGGCAAGGACAAGAAGAGCGCAGAGCGAAGTGACAGGAATGAGGAACAGTGGGAAGAA ATCGACCTTGGTCTATGGGTCAACGACAACGCCCAGGAGGAAGTTCCAAAATCGGGAATACTTGACAGAATAAAG AACAAGCCTTCCAAGAAGAAGGCGAACAAAAACAGCGCGAAACAAGGCGACAGCGAGGATGGAACTGTGGAACAG ACCGATATCTATGCATCGGTCAACAAGAATGCCCACAAGGTTTCAAAGCCAAATTTTTTTCGTACATTGAAGAAC AGGTTCTTCCGGAAGAATCGGGACAAAAGCGCCGCGAAAAAGGGCGATGACGAGGATGGAACCGTGGAAGAAAAT GACGTTCACAAATCGAACAACGAGCCTATCTACGATACGATTCCAGACCCGAGTTCCTTCGGTAAAACCAAGCCT GTCGGGAAGAAAAACGAGGGAAACAATGACATCCATATGTCGGACGAGGATGATATCTACGATTTTCTTGAAGAT CCGAGGTCCTTCGGTCAAGTCAAACCCGAGCCTTTCGGGAAGAATCAGGATAACAAGAGCGCAAAACAGAGCGGC GGCGAGGGCGAGGCATCGGAAGAAAATGACTTGTATATGTCGGCCGACGGTCCTGATATTCCGTCGCCGCCTTGA |