Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1786
Gene name
LocationContig_1401:5625..6786
Strand+
Gene length (bp)1161
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17292 POB3_N POB3-like N-terminal PH domain 7.1E-29 6 96
PF03531 SSrecog Structure-specific recognition protein (SSRP1) 4.4E-29 104 190

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1 1 278 5.0E-170
sp|Q7RWW0|POB3_NEUCR FACT complex subunit ctc-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-1 PE=3 SV=1 1 278 8.0E-157
sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3 SV=2 4 278 5.0E-140
sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pob3 PE=3 SV=1 4 278 1.0E-136
sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3 SV=2 1 278 2.0E-136
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Swissprot ID Swissprot Description Start End E-value
sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1 1 278 5.0E-170
sp|Q7RWW0|POB3_NEUCR FACT complex subunit ctc-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-1 PE=3 SV=1 1 278 8.0E-157
sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3 SV=2 4 278 5.0E-140
sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pob3 PE=3 SV=1 4 278 1.0E-136
sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3 SV=2 1 278 2.0E-136
sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POB3 PE=3 SV=1 7 278 3.0E-82
sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=POB3 PE=3 SV=1 7 278 1.0E-81
sp|O94529|POB3_SCHPO FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pob3 PE=3 SV=1 7 276 1.0E-80
sp|Q04636|POB3_YEAST FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POB3 PE=1 SV=1 7 278 4.0E-74
sp|Q756X6|POB3_ASHGO FACT complex subunit POB3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=POB3 PE=3 SV=1 7 278 7.0E-74
sp|Q6CWD7|POB3_KLULA FACT complex subunit POB3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=POB3 PE=3 SV=1 7 278 1.0E-71
sp|Q6FKI2|POB3_CANGA FACT complex subunit POB3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=POB3 PE=3 SV=1 7 278 5.0E-69
sp|Q6C7V4|POB3_YARLI FACT complex subunit POB3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=POB3 PE=3 SV=1 7 278 9.0E-69
sp|Q4P647|POB3_USTMA FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=POB3 PE=3 SV=1 1 278 6.0E-65
sp|P0CR74|POB3_CRYNJ FACT complex subunit POB3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=POB3 PE=3 SV=1 6 278 2.0E-54
sp|P0CR75|POB3_CRYNB FACT complex subunit POB3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=POB3 PE=3 SV=1 6 278 2.0E-54
sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1 7 276 1.0E-36
sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2 7 276 2.0E-36
sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1 1 276 2.0E-36
sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2 1 276 4.0E-36
sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2 1 276 5.0E-36
sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1 19 278 5.0E-34
sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1 19 276 2.0E-32
sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2 5 276 3.0E-32
sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1 SV=2 18 276 8.0E-30
sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura pseudoobscura GN=Ssrp PE=3 SV=2 60 276 3.0E-29
sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1 19 276 5.0E-28
sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1 19 278 4.0E-27
sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 1 276 6.0E-27
sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1 19 276 4.0E-26
sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=3 SV=1 19 278 4.0E-24
sp|Q54G78|SSRP1_DICDI FACT complex subunit SSRP1 OS=Dictyostelium discoideum GN=ssrp1 PE=3 SV=1 3 278 5.0E-24
sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3 PE=3 SV=1 18 278 7.0E-20
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1786
MTAIESFDSIYLDLSKESGKCRFAETGFGWKPAGGGDTFTLDHSNIGGAQWSRASKGYEVRILQRNSGIIQLDGF
HQEDYERLSKVFKNWYSTALESKEHALRGWNWGKAEFSKAELTFNVQNKPAFELPYSEIGNTNLAGRNEVAVEMS
LPQDANDTGTAGQGGARGKGKKAGAGRDQLVEMRFYIPGTTTKKEAEGEDAAAASENGGEEQNAATLFYETLIDK
AEIGEMAGDTIATFLDVLHLTPRGRFDIDMYEASFRLRGKTYDYKIQYDAIKKARRAIPSS*
Coding >Hirsu2|1786
ATGACTGCAATCGAGAGCTTCGACAGCATCTACCTCGACCTCTCCAAGGAGAGCGGCAAGTGCCGGTTCGCCGAG
ACGGGGTTCGGGTGGAAGCCCGCCGGCGGCGGCGACACCTTCACGCTCGACCACAGCAACATCGGCGGGGCGCAA
TGGAGCCGGGCCTCCAAGGGGTACGAGGTCCGGATCCTGCAGCGCAACTCGGGCATCATCCAGCTCGACGGCTTC
CACCAGGAGGACTACGAGCGGCTGAGCAAGGTGTTCAAGAACTGGTACAGCACGGCGCTGGAGAGCAAGGAGCAC
GCCCTGCGCGGCTGGAACTGGGGCAAGGCCGAGTTCTCCAAGGCCGAGCTCACCTTCAACGTCCAGAACAAGCCG
GCCTTCGAGCTGCCCTACTCCGAGATCGGCAACACGAACCTGGCCGGGCGCAATGAGGTCGCCGTCGAGATGTCG
CTGCCGCAGGACGCCAACGACACCGGTACGGCCGGCCAGGGCGGCGCCCGCGGCAAGGGCAAGAAGGCCGGCGCC
GGCCGCGACCAGCTGGTCGAGATGCGCTTCTACATCCCCGGCACCACCACCAAGAAGGAGGCCGAGGGCGAGGAC
GCGGCCGCCGCCAGCGAGAACGGCGGCGAGGAGCAGAACGCCGCCACCCTCTTCTACGAGACGCTCATCGACAAG
GCGGAGATTGGTGAGATGGCCGGCGACACCATCGCCACCTTCCTCGACGTCCTGCACCTCACCCCCAGAGGCCGC
TTCGACATCGACATGTACGAGGCCTCGTTCCGGCTTCGCGGCAAGACATACGACTACAAGATCCAGTACGACGCC
ATCAAGAAGGCCAGACGCGCTATCCCTTCGTCGTGA
Transcript >Hirsu2|1786
ATGACTGCAATCGAGAGCTTCGACAGCATCTACCTCGACCTCTCCAAGGAGAGCGGCAAGTGCCGGTTCGCCGAG
ACGGGGTTCGGGTGGAAGCCCGCCGGCGGCGGCGACACCTTCACGCTCGACCACAGCAACATCGGCGGGGCGCAA
TGGAGCCGGGCCTCCAAGGGGTACGAGGTCCGGATCCTGCAGCGCAACTCGGGCATCATCCAGCTCGACGGCTTC
CACCAGGAGGACTACGAGCGGCTGAGCAAGGTGTTCAAGAACTGGTACAGCACGGCGCTGGAGAGCAAGGAGCAC
GCCCTGCGCGGCTGGAACTGGGGCAAGGCCGAGTTCTCCAAGGCCGAGCTCACCTTCAACGTCCAGAACAAGCCG
GCCTTCGAGCTGCCCTACTCCGAGATCGGCAACACGAACCTGGCCGGGCGCAATGAGGTCGCCGTCGAGATGTCG
CTGCCGCAGGACGCCAACGACACCGGTACGGCCGGCCAGGGCGGCGCCCGCGGCAAGGGCAAGAAGGCCGGCGCC
GGCCGCGACCAGCTGGTCGAGATGCGCTTCTACATCCCCGGCACCACCACCAAGAAGGAGGCCGAGGGCGAGGAC
GCGGCCGCCGCCAGCGAGAACGGCGGCGAGGAGCAGAACGCCGCCACCCTCTTCTACGAGACGCTCATCGACAAG
GCGGAGATTGGTGAGATGGCCGGCGACACCATCGCCACCTTCCTCGACGTCCTGCACCTCACCCCCAGAGGCCGC
TTCGACATCGACATGTACGAGGCCTCGTTCCGGCTTCGCGGCAAGACATACGACTACAAGATCCAGTACGACGCC
ATCAAGAAGGCCAGACGCGCTATCCCTTCGTCGTGA
Gene >Hirsu2|1786
ATGACTGCAATGTGAGTATCCCCACACCGACGGGAGAGTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAAAACATGCGGAAGAGAAAAGTTGCTGACTCCGGACGCAACACGACAGCGAGAGCT
TCGACAGCATCTACCTCGACCTCTCCAAGGAGAGCGGCAAGTGCCGGTTCGCCGAGACGGGGTTCGGGTGGAAGC
CCGCCGGCGGCGGCGACACCTTCACGCTCGACCACAGCAACATCGGCGGGGCGCAATGGAGCCGGGCCTCCAAGG
GGTACGAGGTCCGGATCCTGCAGCGCAACTCGGGCATCATCCAGCTCGACGGCTTCCACCAGGAGGACTACGAGC
GGCTGAGCAAGGTGTTCAAGAACTGGTACAGCACGGCGCTGGAGAGCAAGGAGCACGCCCTGCGCGGCTGGAACT
GGGGCAAGGCCGAGTTCTCCAAGGCCGAGCTCACCTTCAACGTCCAGAACAAGCCGGCCTTCGAGCTGCCCTACT
CCGAGATCGGCAACACGAACCTGGCCGGGCGCAATGAGGTCGCCGTCGAGATGTCGCTGCCGCAGGACGCCAACG
ACACCGGTACGGCCGGCCAGGGCGGCGCCCGCGGCAAGGGCAAGAAGGCCGGCGCCGGCCGCGACCAGCTGGTCG
AGATGCGCTTCTACATCCCCGGCACCACCACCAAGAAGGAGGCCGAGGGCGAGGACGCGGCCGCCGCCAGCGAGA
ACGGCGGCGAGGAGCAGAACGCCGCCACCCTCTTCTACGAGACGCTCATCGACAAGGCGGAGATTGGTGAGATGG
CCGGCGACACCATCGCCACCTTCCTCGACGTCCTGCACCTCACCCCCAGGTTCGTCCCCCCCCACGCCCTTGGCT
TGTGTCCCCAGCTGCAAGGCAAGCACAGTCTTTTTTTTTTTTAACGTTCTCCCCTCCTCACCCGTCACAGAGGCC
GCTTCGACATCGACATGTACGAGGCCTCGTTCCGGCTTCGCGGCAAGACATACGACTACAAGATCCAGTACGACG
CCATCAAGAAGTTCATGGTGCTCCCGAAGCCCGACGACATGCACTGCATGCTCTGCATCGGGCTGGACCCGCCCC
TGCGGCAGGGCCAGACGCGCTATCCCTTCGTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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