Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1753
Gene name
LocationContig_14:12485..13151
Strand-
Gene length (bp)666
Transcript length (bp)666
Coding sequence length (bp)666
Protein length (aa) 222

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07947 YhhN YhhN family 2.1E-34 31 212

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P64838|Y1436_MYCBO Uncharacterized membrane protein Mb1436 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1436 PE=3 SV=2 55 214 5.0E-06
sp|P9WG51|Y1401_MYCTU Uncharacterized membrane protein Rv1401 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1401 PE=1 SV=2 55 214 5.0E-06
sp|P9WG50|Y1401_MYCTO Uncharacterized membrane protein MT1445 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1445 PE=3 SV=2 55 214 5.0E-06

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 4 21 17
2 41 63 22
3 78 100 22
4 113 130 17
5 134 156 22
6 199 216 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1753
MPTLYTTILVTSAGTAIFYGLRIRTPANLTRMVLKAASTALLSLLAAVHGTSWLLVAALAFGAGGDAFLAWPGET
TFLCGLGSFLIAHLLYIAVFVQIGSGMDLIVAEGWRRVCAVMVSVLAPAMSLILVRRVGTSLRLPIVIYSTAILF
MVLCSLTTPTQDVVMGALCFAISDTFLAADEFLVATESRHRTWMQHTVWILYYGGQVLLATGLLQADARSL*
Coding >Hirsu2|1753
ATGCCAACTCTCTATACAACAATATTGGTTACTTCGGCTGGCACCGCAATCTTCTACGGTCTACGGATTCGCACG
CCGGCAAACTTGACCCGCATGGTTCTTAAGGCGGCTTCGACGGCATTGCTATCGCTCCTCGCCGCAGTGCATGGC
ACATCATGGCTTCTTGTAGCCGCGCTGGCTTTTGGGGCAGGAGGCGATGCGTTTCTTGCTTGGCCTGGCGAGACG
ACCTTCCTATGTGGTCTCGGCAGCTTTCTCATAGCTCACCTGCTCTACATTGCGGTATTCGTGCAGATCGGAAGC
GGCATGGACCTCATCGTTGCTGAAGGTTGGCGTCGAGTTTGCGCCGTCATGGTGTCCGTCCTGGCACCGGCCATG
AGTCTTATTTTGGTGCGGAGGGTTGGGACTTCACTGCGGTTGCCTATCGTCATCTACTCTACGGCGATTCTTTTC
ATGGTACTTTGCTCTCTCACCACTCCGACTCAGGACGTCGTCATGGGAGCTTTATGCTTTGCGATTTCGGATACT
TTTTTGGCCGCAGACGAATTCCTGGTCGCGACCGAATCACGGCATCGTACGTGGATGCAGCACACAGTTTGGATC
TTATATTATGGTGGCCAGGTCCTTCTTGCCACAGGCTTACTGCAGGCGGACGCGCGGAGCCTTTAA
Transcript >Hirsu2|1753
ATGCCAACTCTCTATACAACAATATTGGTTACTTCGGCTGGCACCGCAATCTTCTACGGTCTACGGATTCGCACG
CCGGCAAACTTGACCCGCATGGTTCTTAAGGCGGCTTCGACGGCATTGCTATCGCTCCTCGCCGCAGTGCATGGC
ACATCATGGCTTCTTGTAGCCGCGCTGGCTTTTGGGGCAGGAGGCGATGCGTTTCTTGCTTGGCCTGGCGAGACG
ACCTTCCTATGTGGTCTCGGCAGCTTTCTCATAGCTCACCTGCTCTACATTGCGGTATTCGTGCAGATCGGAAGC
GGCATGGACCTCATCGTTGCTGAAGGTTGGCGTCGAGTTTGCGCCGTCATGGTGTCCGTCCTGGCACCGGCCATG
AGTCTTATTTTGGTGCGGAGGGTTGGGACTTCACTGCGGTTGCCTATCGTCATCTACTCTACGGCGATTCTTTTC
ATGGTACTTTGCTCTCTCACCACTCCGACTCAGGACGTCGTCATGGGAGCTTTATGCTTTGCGATTTCGGATACT
TTTTTGGCCGCAGACGAATTCCTGGTCGCGACCGAATCACGGCATCGTACGTGGATGCAGCACACAGTTTGGATC
TTATATTATGGTGGCCAGGTCCTTCTTGCCACAGGCTTACTGCAGGCGGACGCGCGGAGCCTTTAA
Gene >Hirsu2|1753
ATGCCAACTCTCTATACAACAATATTGGTTACTTCGGCTGGCACCGCAATCTTCTACGGTCTACGGATTCGCACG
CCGGCAAACTTGACCCGCATGGTTCTTAAGGCGGCTTCGACGGCATTGCTATCGCTCCTCGCCGCAGTGCATGGC
ACATCATGGCTTCTTGTAGCCGCGCTGGCTTTTGGGGCAGGAGGCGATGCGTTTCTTGCTTGGCCTGGCGAGACG
ACCTTCCTATGTGGTCTCGGCAGCTTTCTCATAGCTCACCTGCTCTACATTGCGGTATTCGTGCAGATCGGAAGC
GGCATGGACCTCATCGTTGCTGAAGGTTGGCGTCGAGTTTGCGCCGTCATGGTGTCCGTCCTGGCACCGGCCATG
AGTCTTATTTTGGTGCGGAGGGTTGGGACTTCACTGCGGTTGCCTATCGTCATCTACTCTACGGCGATTCTTTTC
ATGGTACTTTGCTCTCTCACCACTCCGACTCAGGACGTCGTCATGGGAGCTTTATGCTTTGCGATTTCGGATACT
TTTTTGGCCGCAGACGAATTCCTGGTCGCGACCGAATCACGGCATCGTACGTGGATGCAGCACACAGTTTGGATC
TTATATTATGGTGGCCAGGTCCTTCTTGCCACAGGCTTACTGCAGGCGGACGCGCGGAGCCTTTAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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