Protein ID | Hirsu2|175 |
Gene name | |
Location | Contig_103:2273..3818 |
Strand | - |
Gene length (bp) | 1545 |
Transcript length (bp) | 1413 |
Coding sequence length (bp) | 1413 |
Protein length (aa) | 471 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1155 | 0.4217 | 0.0603 | 0.1194 | 0.2472 | 0.0388 | 0.6925 | 0.2334 | 0.3618 | 0.0874 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 161 | 183 | 22 |
2 | 193 | 211 | 18 |
3 | 344 | 366 | 22 |
4 | 370 | 392 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 393 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|175 MPERSLPEPSPALDPDEQEGIRALNRTPHPYHHHSAELQLRSARDGLGSESPAAHNGDALSSPTTRPAFAKESSP ASDSGTDADDEHFLKGLPAPRVRLHKGLRGRNEFPSGISTPLASPAIPGDEQSHAAEKDLSERQNSLKRRLRDAE RRRKVLVRRVAEISLVLALGGMVCLNPLAYPLVRAWNKDFQRLGLLLATLLALYPLRVAAWAHRHRRPSRMIPFK IPSNVDPAPLLYPPTLTIFASLLVSPRNPMAVLPNVILSICSIPPFLIPQTGLATASNDPLHWALSVLPLNFRST ATATLGLTDMGLSDETLVLLYPLHRTLCSVLQLLTTTSLLEAELQLLSIALIDLFILAVSPQVQVLKALLWVGGL CTLVLCGPVIKWGIALARVPKWRFRRTRGSSKSHFWKDLRRMLSGRRTKHQMLASTTDDSLDDTDSSANDDDQLS MIGSLSRARTLGPNHELRCP* |
Coding | >Hirsu2|175 ATGCCAGAGCGCAGCTTGCCCGAGCCCTCGCCGGCTCTTGACCCCGACGAGCAAGAGGGCATCCGCGCGCTGAAC CGGACGCCCCATCCGTACCACCATCACAGCGCAGAATTGCAGCTCCGCTCGGCGCGCGACGGCCTCGGCAGCGAG AGCCCAGCAGCCCATAACGGCGACGCCCTTTCATCCCCGACCACGCGCCCGGCCTTCGCCAAGGAGTCGTCTCCC GCCAGTGATAGCGGCACCGACGCCGACGACGAGCATTTCCTCAAGGGACTCCCCGCGCCCAGGGTCAGGCTGCAT AAGGGATTACGCGGCCGCAATGAGTTTCCGTCGGGAATATCCACCCCTCTGGCCTCCCCCGCCATTCCCGGGGAT GAGCAGTCGCACGCTGCCGAGAAGGATCTGTCGGAAAGGCAGAACTCGCTCAAGCGCCGTCTCAGGGACGCCGAG CGCCGTAGAAAGGTCCTGGTGCGCCGTGTGGCCGAAATCTCTCTGGTCCTTGCCCTTGGGGGCATGGTATGCCTA AACCCTCTCGCCTACCCCTTGGTGCGAGCCTGGAACAAAGACTTTCAACGGCTGGGCCTGCTGCTCGCGACCTTG CTGGCTCTTTACCCTCTCCGCGTCGCCGCGTGGGCGCATCGGCATCGTCGGCCGTCGCGCATGATCCCCTTCAAG ATACCCTCAAACGTCGACCCAGCTCCGTTGCTGTATCCGCCGACCCTGACCATCTTTGCATCCCTCCTCGTTTCC CCGCGCAACCCGATGGCGGTCCTCCCCAACGTAATCCTGAGCATATGCTCTATTCCCCCGTTCTTGATACCTCAG ACTGGACTCGCCACCGCCTCAAATGACCCACTGCATTGGGCACTCTCCGTCTTGCCTTTGAATTTCAGGTCAACC GCCACCGCCACTCTCGGGCTGACTGACATGGGCTTGTCGGACGAAACGCTCGTCTTGCTCTACCCCCTGCACCGG ACGCTATGCTCCGTTTTGCAACTCCTCACGACCACCAGTCTCCTCGAGGCCGAGCTCCAGCTGCTGTCCATCGCG CTCATCGACCTTTTCATCCTGGCAGTCTCGCCTCAGGTCCAAGTGTTGAAGGCCCTACTTTGGGTTGGGGGACTG TGCACCCTTGTGCTCTGCGGGCCGGTCATCAAATGGGGCATTGCGCTGGCGCGAGTACCCAAATGGCGCTTCCGA CGGACTCGTGGCTCCTCGAAATCTCACTTCTGGAAGGACCTGCGCCGAATGTTGTCGGGGCGCAGAACAAAGCAT CAGATGTTGGCCTCGACCACGGATGACAGCCTCGACGATACCGACTCCTCTGCCAATGACGACGACCAGCTGTCC ATGATTGGCAGCCTTTCAAGGGCTCGGACCCTGGGACCCAACCACGAATTGCGTTGCCCCTAG |
Transcript | >Hirsu2|175 ATGCCAGAGCGCAGCTTGCCCGAGCCCTCGCCGGCTCTTGACCCCGACGAGCAAGAGGGCATCCGCGCGCTGAAC CGGACGCCCCATCCGTACCACCATCACAGCGCAGAATTGCAGCTCCGCTCGGCGCGCGACGGCCTCGGCAGCGAG AGCCCAGCAGCCCATAACGGCGACGCCCTTTCATCCCCGACCACGCGCCCGGCCTTCGCCAAGGAGTCGTCTCCC GCCAGTGATAGCGGCACCGACGCCGACGACGAGCATTTCCTCAAGGGACTCCCCGCGCCCAGGGTCAGGCTGCAT AAGGGATTACGCGGCCGCAATGAGTTTCCGTCGGGAATATCCACCCCTCTGGCCTCCCCCGCCATTCCCGGGGAT GAGCAGTCGCACGCTGCCGAGAAGGATCTGTCGGAAAGGCAGAACTCGCTCAAGCGCCGTCTCAGGGACGCCGAG CGCCGTAGAAAGGTCCTGGTGCGCCGTGTGGCCGAAATCTCTCTGGTCCTTGCCCTTGGGGGCATGGTATGCCTA AACCCTCTCGCCTACCCCTTGGTGCGAGCCTGGAACAAAGACTTTCAACGGCTGGGCCTGCTGCTCGCGACCTTG CTGGCTCTTTACCCTCTCCGCGTCGCCGCGTGGGCGCATCGGCATCGTCGGCCGTCGCGCATGATCCCCTTCAAG ATACCCTCAAACGTCGACCCAGCTCCGTTGCTGTATCCGCCGACCCTGACCATCTTTGCATCCCTCCTCGTTTCC CCGCGCAACCCGATGGCGGTCCTCCCCAACGTAATCCTGAGCATATGCTCTATTCCCCCGTTCTTGATACCTCAG ACTGGACTCGCCACCGCCTCAAATGACCCACTGCATTGGGCACTCTCCGTCTTGCCTTTGAATTTCAGGTCAACC GCCACCGCCACTCTCGGGCTGACTGACATGGGCTTGTCGGACGAAACGCTCGTCTTGCTCTACCCCCTGCACCGG ACGCTATGCTCCGTTTTGCAACTCCTCACGACCACCAGTCTCCTCGAGGCCGAGCTCCAGCTGCTGTCCATCGCG CTCATCGACCTTTTCATCCTGGCAGTCTCGCCTCAGGTCCAAGTGTTGAAGGCCCTACTTTGGGTTGGGGGACTG TGCACCCTTGTGCTCTGCGGGCCGGTCATCAAATGGGGCATTGCGCTGGCGCGAGTACCCAAATGGCGCTTCCGA CGGACTCGTGGCTCCTCGAAATCTCACTTCTGGAAGGACCTGCGCCGAATGTTGTCGGGGCGCAGAACAAAGCAT CAGATGTTGGCCTCGACCACGGATGACAGCCTCGACGATACCGACTCCTCTGCCAATGACGACGACCAGCTGTCC ATGATTGGCAGCCTTTCAAGGGCTCGGACCCTGGGACCCAACCACGAATTGCGTTGCCCCTAG |
Gene | >Hirsu2|175 ATGCCAGAGCGCAGCTTGCCCGAGCCCTCGCCGGCTCTTGACCCCGACGAGCAAGAGGGCATCCGCGCGCTGAAC CGGACGCCCCATCCGTACCACCATCACAGCGCAGAATTGCAGCTCCGCTCGGCGCGCGACGGCCTCGGCAGCGAG AGCCCAGCAGCCCATAACGGCGACGCCCTTTCATCCCCGACCACGCGCCCGGCCTTCGCCAAGGAGTCGTCTCCC GCCAGTGATAGCGGCACCGACGCCGACGACGAGCATTTCCTCAAGGGACTCCCCGCGCCCAGGGTCAGGCTGCAT AAGGGATTACGCGGCCGCAATGAGTTTCCGTCGGGAATATCCACCCCTCTGGCCTCCCCCGCCATTCCCGGGGAT GAGCAGTCGCACGCTGCCGAGAAGGATCTGTCGGAAAGGCAGAACTCGCTCAAGCGCCGTCTCAGGGACGCCGAG CGCCGTAGAAAGGTCCTGGTGCGCCGTGTGGCCGAAATCTCTCTGGTCCTTGCCCTTGGGGGCATGGTATGCCTA AACCCTCTCGCCTACCCCTTGGTGCGAGCCTGGAACAAAGGTACGCAGTGCTCATGTCCAAGACTCGCGGCACGC CATCTCACACCATGGTAGACTTTCAACGGCTGGGCCTGCTGCTCGCGACCTTGCTGGCTCTTTACCCTCTCCGCG TCGCCGCGTGGGCGCATCGGCATCGTCGGCCGTCGCGCATGATCCCCTTCAAGATACCCTCAAACGTCGACCCAG CTCCGTTGCTGTATCCGCCGACCCTGACCATCTTTGCATCCCTCCTCGTTTCCCCGCGCAACCCGATGGCGGTCC TCCCCAACGTAATCCTGAGCATATGCTCTATTCCCCCGTTCTTGATACCTCAGACTGGACTCGCCACCGCCTCAA ATGACCCACTGCATTGGGCACTCTCCGTCTTGCCTTTGAATTTCAGGTCAACCGCCACCGCCACTCTCGGGCTGA CTGACATGGGCTTGTCGGACGAAACGCTCGTCTTGCTCTACCCCCTGCACCGGACGCTATGCTCCGTTTTGCAAC TCCTCACGACCACCAGTCTCCTCGAGGCCGAGCTCCAGCTGCTGTCCATCGCGCTCATCGACCTTTTCATCCTGG CAGTCTCGCCTCAGGTCCAAGTGTTGAAGGCCCTACTTTGGGTTGGGGGACTGTGCACCCTTGTGCTCTGCGGGC CGGTCATCAAATGGGGCATTGCGCTGGCGCGAGTACCCAAATGGCGCTTCCGACGGACTCGTGGCTCCTCGAAAT CTCACTTCTGGAAGGACCTGCGCCGAATGTTGTCGGGGCGCAGAACAAAGCATCAGATGTTGGCCTCGACCACGG ATGACAGCCTCGACGATACCGACTCCTCTGCCAATGACGACGACCAGCTGTCCATGATTGGCAGCCTTTCAAGGG CTCGGACCCTGGGACCCAACCACGAATTGCGTTGCGTGAGCCAGAATGTCTTGTCCTCGAAAGACGGCCAAGGCC CTGACTCGACCGGCATCACACGAAGGCAAACCACATCAGCCCTAG |