© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1741 |
| Gene name | |
| Location | Contig_1396:5733..6798 |
| Strand | - |
| Gene length (bp) | 1065 |
| Transcript length (bp) | 1065 |
| Coding sequence length (bp) | 1065 |
| Protein length (aa) | 355 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 1.6E-37 | 96 | 301 |
| PF08390 | TRAM1 | TRAM1-like protein | 9.5E-25 | 31 | 92 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59735|LAC1_SCHPO | Sphingosine N-acyltransferase lac1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lac1 PE=1 SV=2 | 3 | 310 | 9.0E-95 |
| sp|A6ZSP9|LAG1_YEAS7 | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAG1 PE=3 SV=1 | 3 | 327 | 5.0E-93 |
| sp|P38703|LAG1_YEAST | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAG1 PE=1 SV=1 | 3 | 327 | 1.0E-92 |
| sp|P28496|LAC1_YEAST | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAC1 PE=1 SV=2 | 3 | 313 | 5.0E-84 |
| sp|A6ZZV7|LAC1_YEAS7 | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAC1 PE=3 SV=1 | 3 | 313 | 5.0E-84 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59735|LAC1_SCHPO | Sphingosine N-acyltransferase lac1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lac1 PE=1 SV=2 | 3 | 310 | 9.0E-95 |
| sp|A6ZSP9|LAG1_YEAS7 | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAG1 PE=3 SV=1 | 3 | 327 | 5.0E-93 |
| sp|P38703|LAG1_YEAST | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAG1 PE=1 SV=1 | 3 | 327 | 1.0E-92 |
| sp|P28496|LAC1_YEAST | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAC1 PE=1 SV=2 | 3 | 313 | 5.0E-84 |
| sp|A6ZZV7|LAC1_YEAS7 | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAC1 PE=3 SV=1 | 3 | 313 | 5.0E-84 |
| sp|P78970|LAG1_SCHPO | Sphingosine N-acyltransferase lag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lag1 PE=1 SV=2 | 22 | 324 | 3.0E-39 |
| sp|Q9D6J1|CERS4_MOUSE | Ceramide synthase 4 OS=Mus musculus GN=Cers4 PE=1 SV=1 | 66 | 354 | 4.0E-23 |
| sp|Q96G23|CERS2_HUMAN | Ceramide synthase 2 OS=Homo sapiens GN=CERS2 PE=1 SV=1 | 77 | 318 | 1.0E-21 |
| sp|Q924Z4|CERS2_MOUSE | Ceramide synthase 2 OS=Mus musculus GN=Cers2 PE=1 SV=1 | 77 | 318 | 2.0E-21 |
| sp|Q3ZBF8|CERS2_BOVIN | Ceramide synthase 2 OS=Bos taurus GN=CERS2 PE=2 SV=1 | 77 | 318 | 2.0E-21 |
| sp|Q9LJK3|LAG12_ARATH | LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1 | 82 | 324 | 3.0E-20 |
| sp|Q6YWS8|ASCL2_ORYSJ | ASC1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0728300 PE=3 SV=2 | 57 | 329 | 5.0E-19 |
| sp|G5ED45|HYL1_CAEEL | Ceramide synthase hyl-1 OS=Caenorhabditis elegans GN=hyl-1 PE=1 SV=1 | 92 | 327 | 1.0E-18 |
| sp|Q5E9R6|CERS4_BOVIN | Ceramide synthase 4 OS=Bos taurus GN=CERS4 PE=2 SV=1 | 85 | 346 | 5.0E-18 |
| sp|Q6EUN0|ASCL1_ORYSJ | ASC1-like protein 1 OS=Oryza sativa subsp. japonica GN=Os02g0581300 PE=2 SV=1 | 91 | 327 | 5.0E-18 |
| sp|Q84QC0|ASCL3_ORYSJ | ASC1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0264000 PE=2 SV=1 | 91 | 323 | 6.0E-18 |
| sp|Q6NQI8|LAG13_ARATH | LAG1 longevity assurance homolog 3 OS=Arabidopsis thaliana GN=At1g13580 PE=2 SV=2 | 60 | 324 | 7.0E-18 |
| sp|Q6ZMG9|CERS6_HUMAN | Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 SV=1 | 85 | 316 | 2.0E-17 |
| sp|Q8W4Y5|ASCL_SOLLC | ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1 | 60 | 323 | 8.0E-16 |
| sp|Q9LDF2|LAG11_ARATH | LAG1 longevity assurance homolog 1 OS=Arabidopsis thaliana GN=LAG1 PE=2 SV=1 | 93 | 324 | 2.0E-15 |
| sp|Q8C172|CERS6_MOUSE | Ceramide synthase 6 OS=Mus musculus GN=Cers6 PE=1 SV=1 | 85 | 307 | 2.0E-15 |
| sp|Q9HA82|CERS4_HUMAN | Ceramide synthase 4 OS=Homo sapiens GN=CERS4 PE=1 SV=2 | 75 | 337 | 3.0E-15 |
| sp|Q8N5B7|CERS5_HUMAN | Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1 | 95 | 316 | 1.0E-13 |
| sp|Q9D6K9|CERS5_MOUSE | Ceramide synthase 5 OS=Mus musculus GN=Cers5 PE=1 SV=1 | 95 | 316 | 7.0E-13 |
| sp|Q7Z139|HYL2_CAEEL | Ceramide synthase hyl-2 OS=Caenorhabditis elegans GN=hyl-2 PE=1 SV=1 | 82 | 321 | 8.0E-12 |
| sp|Q9M6A3|ASC1_SOLLC | Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2 | 91 | 324 | 1.0E-10 |
| sp|Q8IU89|CERS3_HUMAN | Ceramide synthase 3 OS=Homo sapiens GN=CERS3 PE=1 SV=2 | 84 | 221 | 6.0E-10 |
| sp|P27544|CERS1_HUMAN | Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 SV=1 | 72 | 223 | 2.0E-07 |
| sp|Q1A3B0|CERS3_MOUSE | Ceramide synthase 3 OS=Mus musculus GN=Cers3 PE=1 SV=1 | 96 | 221 | 4.0E-07 |
| sp|P27545|CERS1_MOUSE | Ceramide synthase 1 OS=Mus musculus GN=Cers1 PE=1 SV=1 | 79 | 328 | 8.0E-07 |
| sp|Q924Z5|TRAM2_MOUSE | Translocating chain-associated membrane protein 2 OS=Mus musculus GN=Tram2 PE=1 SV=1 | 11 | 155 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 54 | 76 | 22 |
| 3 | 104 | 126 | 22 |
| 4 | 146 | 165 | 19 |
| 5 | 230 | 252 | 22 |
| 6 | 275 | 297 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1741 MVKHTFVLPACILLVFLTGYALNPSEANPLHRWIFLSYRLPHEDPTRPVQYGKGPWDLAFVAFYTVVLSFTREFV MQELLRPLARRTGLGRSKQARFMEQMYTALYFVVLGPAGIYVMSRTPVWYFNTRGMYEGFPHRTHEACVKFYYLF QAAYWAQQAIVLLLGMEKPRKDFKELVGHHVVSLALIGLSYRFHFVHLGIAVYTTHDISDFFLATSKVLNYMEHP LVGPYFFLFMCVWIYLRHVVNLGIIWSLFTEFRTVGPFELNWETEQYKCTLSQYITAALLSSLQALNLFWLFHIV RIAYRFVVHNIAEDDRSDDEHDDDPDQPPLALVKEAVPTLELNGRAVVAHGRAR* |
| Coding | >Hirsu2|1741 ATGGTCAAGCACACGTTCGTGCTGCCGGCCTGCATCCTGCTCGTCTTCCTGACCGGGTACGCGCTCAACCCGAGC GAGGCCAACCCGCTCCACCGGTGGATCTTCCTGTCGTACCGGCTGCCGCACGAGGATCCGACGCGCCCCGTGCAG TACGGCAAGGGCCCGTGGGACCTGGCCTTTGTCGCCTTCTACACCGTCGTCCTCTCCTTCACGCGCGAGTTCGTG ATGCAGGAGCTGCTGCGGCCGCTGGCGCGGCGGACCGGGCTCGGGCGGTCGAAGCAGGCGCGCTTCATGGAGCAG ATGTACACGGCGCTGTACTTTGTGGTGCTCGGCCCCGCCGGCATCTACGTCATGAGCCGGACGCCGGTCTGGTAC TTCAACACGCGCGGCATGTACGAGGGCTTCCCGCACCGGACGCACGAGGCGTGCGTCAAGTTCTACTACCTCTTC CAGGCGGCCTACTGGGCGCAGCAGGCCATCGTGCTGCTGCTGGGGATGGAGAAGCCGCGCAAGGACTTCAAGGAG CTGGTCGGGCACCACGTCGTCAGCCTGGCGCTCATCGGGCTCAGCTACCGCTTCCACTTCGTGCACCTGGGCATC GCCGTCTACACGACGCACGACATCAGCGACTTCTTCCTGGCCACGTCCAAGGTGCTCAACTACATGGAGCACCCG CTCGTCGGGCCCTACTTCTTCCTCTTCATGTGCGTCTGGATCTACCTGCGGCACGTGGTCAACCTCGGCATCATC TGGTCCCTCTTCACCGAGTTCCGCACCGTCGGCCCCTTCGAGCTCAACTGGGAGACGGAGCAGTACAAGTGCACG CTGAGCCAGTACATCACGGCCGCCCTGCTGTCGTCGCTGCAGGCCCTCAACCTCTTCTGGCTCTTCCACATCGTC CGCATCGCCTACCGCTTCGTCGTCCACAACATCGCCGAGGACGACCGGTCCGACGACGAGCACGACGACGACCCG GACCAGCCGCCCCTCGCCCTCGTCAAGGAAGCCGTCCCGACGCTCGAGCTCAACGGCCGCGCCGTCGTCGCCCAC GGCCGCGCCCGATGA |
| Transcript | >Hirsu2|1741 ATGGTCAAGCACACGTTCGTGCTGCCGGCCTGCATCCTGCTCGTCTTCCTGACCGGGTACGCGCTCAACCCGAGC GAGGCCAACCCGCTCCACCGGTGGATCTTCCTGTCGTACCGGCTGCCGCACGAGGATCCGACGCGCCCCGTGCAG TACGGCAAGGGCCCGTGGGACCTGGCCTTTGTCGCCTTCTACACCGTCGTCCTCTCCTTCACGCGCGAGTTCGTG ATGCAGGAGCTGCTGCGGCCGCTGGCGCGGCGGACCGGGCTCGGGCGGTCGAAGCAGGCGCGCTTCATGGAGCAG ATGTACACGGCGCTGTACTTTGTGGTGCTCGGCCCCGCCGGCATCTACGTCATGAGCCGGACGCCGGTCTGGTAC TTCAACACGCGCGGCATGTACGAGGGCTTCCCGCACCGGACGCACGAGGCGTGCGTCAAGTTCTACTACCTCTTC CAGGCGGCCTACTGGGCGCAGCAGGCCATCGTGCTGCTGCTGGGGATGGAGAAGCCGCGCAAGGACTTCAAGGAG CTGGTCGGGCACCACGTCGTCAGCCTGGCGCTCATCGGGCTCAGCTACCGCTTCCACTTCGTGCACCTGGGCATC GCCGTCTACACGACGCACGACATCAGCGACTTCTTCCTGGCCACGTCCAAGGTGCTCAACTACATGGAGCACCCG CTCGTCGGGCCCTACTTCTTCCTCTTCATGTGCGTCTGGATCTACCTGCGGCACGTGGTCAACCTCGGCATCATC TGGTCCCTCTTCACCGAGTTCCGCACCGTCGGCCCCTTCGAGCTCAACTGGGAGACGGAGCAGTACAAGTGCACG CTGAGCCAGTACATCACGGCCGCCCTGCTGTCGTCGCTGCAGGCCCTCAACCTCTTCTGGCTCTTCCACATCGTC CGCATCGCCTACCGCTTCGTCGTCCACAACATCGCCGAGGACGACCGGTCCGACGACGAGCACGACGACGACCCG GACCAGCCGCCCCTCGCCCTCGTCAAGGAAGCCGTCCCGACGCTCGAGCTCAACGGCCGCGCCGTCGTCGCCCAC GGCCGCGCCCGATGA |
| Gene | >Hirsu2|1741 ATGGTCAAGCACACGTTCGTGCTGCCGGCCTGCATCCTGCTCGTCTTCCTGACCGGGTACGCGCTCAACCCGAGC GAGGCCAACCCGCTCCACCGGTGGATCTTCCTGTCGTACCGGCTGCCGCACGAGGATCCGACGCGCCCCGTGCAG TACGGCAAGGGCCCGTGGGACCTGGCCTTTGTCGCCTTCTACACCGTCGTCCTCTCCTTCACGCGCGAGTTCGTG ATGCAGGAGCTGCTGCGGCCGCTGGCGCGGCGGACCGGGCTCGGGCGGTCGAAGCAGGCGCGCTTCATGGAGCAG ATGTACACGGCGCTGTACTTTGTGGTGCTCGGCCCCGCCGGCATCTACGTCATGAGCCGGACGCCGGTCTGGTAC TTCAACACGCGCGGCATGTACGAGGGCTTCCCGCACCGGACGCACGAGGCGTGCGTCAAGTTCTACTACCTCTTC CAGGCGGCCTACTGGGCGCAGCAGGCCATCGTGCTGCTGCTGGGGATGGAGAAGCCGCGCAAGGACTTCAAGGAG CTGGTCGGGCACCACGTCGTCAGCCTGGCGCTCATCGGGCTCAGCTACCGCTTCCACTTCGTGCACCTGGGCATC GCCGTCTACACGACGCACGACATCAGCGACTTCTTCCTGGCCACGTCCAAGGTGCTCAACTACATGGAGCACCCG CTCGTCGGGCCCTACTTCTTCCTCTTCATGTGCGTCTGGATCTACCTGCGGCACGTGGTCAACCTCGGCATCATC TGGTCCCTCTTCACCGAGTTCCGCACCGTCGGCCCCTTCGAGCTCAACTGGGAGACGGAGCAGTACAAGTGCACG CTGAGCCAGTACATCACGGCCGCCCTGCTGTCGTCGCTGCAGGCCCTCAACCTCTTCTGGCTCTTCCACATCGTC CGCATCGCCTACCGCTTCGTCGTCCACAACATCGCCGAGGACGACCGGTCCGACGACGAGCACGACGACGACCCG GACCAGCCGCCCCTCGCCCTCGTCAAGGAAGCCGTCCCGACGCTCGAGCTCAACGGCCGCGCCGTCGTCGCCCAC GGCCGCGCCCGATGA |