Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1739
Gene name
LocationContig_1395:1359..3004
Strand-
Gene length (bp)1645
Transcript length (bp)1002
Coding sequence length (bp)1002
Protein length (aa) 334

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01822 WSC WSC domain 7.2E-11 34 105

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P38739|WSC4_YEAST Cell wall integrity and stress response component 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSC4 PE=1 SV=1 14 115 4.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 28 0.45

Transmembrane Domains

Domain # Start End Length
1 213 235 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1739
MGSRRPLARPGRSWPLLLSACLATVCALDPSICASFNTASSGQNTSIYQTNGLCHDFCLKKNSAYAITQGNSCWC
SDYTPAKGKQVDMSECNKPCPAYPDEKCGGQGVFGYIALGGALPSGTKGDPEPEPTPSPTSKQHKTEETHVSSAS
KSSIEAPTVSEPPAPATSIIQTIVAGGTVQTVTVIPTQSTVSAGVKDSTDVTPGRSGLGTGGVAGIVAAIAVVLA
AAAMALFFYFQRKKRTEEDFRDDPSARGSSSGMLGRPEMSGIPGSPGSTGNRSSMLQIDPRMDPFKQGLYARSGS
HESINTLGDEHDYSRRIQPPKVLRATNPDPTED*
Coding >Hirsu2|1739
ATGGGCTCGCGTCGGCCGCTCGCTCGCCCCGGCCGCAGCTGGCCGCTGCTGCTGTCGGCCTGCCTGGCCACCGTC
TGCGCCCTCGACCCCAGCATCTGCGCCAGCTTCAACACGGCCTCGTCCGGTCAAAACACGAGCATCTACCAGACC
AATGGCCTGTGTCACGACTTTTGCCTCAAGAAGAACTCGGCCTATGCCATCACCCAGGGCAACTCGTGCTGGTGC
TCCGACTACACCCCCGCCAAGGGCAAGCAGGTCGACATGTCCGAGTGCAACAAGCCGTGCCCGGCCTATCCCGAC
GAGAAGTGCGGAGGCCAAGGCGTCTTCGGATACATCGCCCTCGGCGGCGCCCTGCCGTCCGGCACAAAGGGCGAC
CCGGAGCCCGAACCGACTCCGTCGCCGACGTCAAAGCAGCACAAGACGGAAGAGACGCACGTCAGCAGCGCCAGC
AAGAGCAGCATTGAGGCGCCCACCGTCAGCGAGCCCCCCGCGCCCGCGACATCCATCATCCAGACCATCGTCGCC
GGCGGCACCGTCCAGACAGTCACCGTCATCCCGACGCAGTCGACCGTCTCGGCCGGCGTCAAGGACTCGACCGAC
GTCACGCCCGGCAGGAGCGGGCTCGGCACCGGAGGCGTCGCGGGCATCGTGGCCGCCATCGCCGTCGTCTTGGCC
GCCGCCGCCATGGCCCTGTTCTTCTACTTCCAGCGCAAGAAGCGGACGGAGGAAGACTTCCGCGACGACCCCAGC
GCCCGCGGAAGCTCGTCGGGCATGCTGGGCCGGCCCGAGATGTCGGGCATCCCCGGCTCGCCCGGCTCGACGGGC
AACCGCAGCAGCATGCTCCAGATCGACCCGCGCATGGACCCGTTCAAGCAGGGGCTGTACGCCCGCAGCGGCAGC
CACGAGAGCATCAACACGCTCGGCGACGAGCACGACTACTCGAGACGCATCCAGCCGCCCAAGGTGCTGCGGGCC
ACCAACCCCGACCCGACCGAGGACTGA
Transcript >Hirsu2|1739
ATGGGCTCGCGTCGGCCGCTCGCTCGCCCCGGCCGCAGCTGGCCGCTGCTGCTGTCGGCCTGCCTGGCCACCGTC
TGCGCCCTCGACCCCAGCATCTGCGCCAGCTTCAACACGGCCTCGTCCGGTCAAAACACGAGCATCTACCAGACC
AATGGCCTGTGTCACGACTTTTGCCTCAAGAAGAACTCGGCCTATGCCATCACCCAGGGCAACTCGTGCTGGTGC
TCCGACTACACCCCCGCCAAGGGCAAGCAGGTCGACATGTCCGAGTGCAACAAGCCGTGCCCGGCCTATCCCGAC
GAGAAGTGCGGAGGCCAAGGCGTCTTCGGATACATCGCCCTCGGCGGCGCCCTGCCGTCCGGCACAAAGGGCGAC
CCGGAGCCCGAACCGACTCCGTCGCCGACGTCAAAGCAGCACAAGACGGAAGAGACGCACGTCAGCAGCGCCAGC
AAGAGCAGCATTGAGGCGCCCACCGTCAGCGAGCCCCCCGCGCCCGCGACATCCATCATCCAGACCATCGTCGCC
GGCGGCACCGTCCAGACAGTCACCGTCATCCCGACGCAGTCGACCGTCTCGGCCGGCGTCAAGGACTCGACCGAC
GTCACGCCCGGCAGGAGCGGGCTCGGCACCGGAGGCGTCGCGGGCATCGTGGCCGCCATCGCCGTCGTCTTGGCC
GCCGCCGCCATGGCCCTGTTCTTCTACTTCCAGCGCAAGAAGCGGACGGAGGAAGACTTCCGCGACGACCCCAGC
GCCCGCGGAAGCTCGTCGGGCATGCTGGGCCGGCCCGAGATGTCGGGCATCCCCGGCTCGCCCGGCTCGACGGGC
AACCGCAGCAGCATGCTCCAGATCGACCCGCGCATGGACCCGTTCAAGCAGGGGCTGTACGCCCGCAGCGGCAGC
CACGAGAGCATCAACACGCTCGGCGACGAGCACGACTACTCGAGACGCATCCAGCCGCCCAAGGTGCTGCGGGCC
ACCAACCCCGACCCGACCGAGGACTGA
Gene >Hirsu2|1739
ATGGGCTCGCGTCGGCCGCTCGCTCGCCCCGGCCGCAGCTGGCCGCTGCTGCTGTCGGCCTGCCTGGCCACCGTC
TGCGCCCTCGACCCCAGCATCTGCGCCAGCTTCAACACGGCCTCGTCCGGTCAAAGTCCGTCGCCGTCCGCGCCC
TCTCCTCCGCGCCCTGAGCCCTGCTGACTGCGTCCCGGCCCAGACACGAGCATCTACCAGACCAATGGCCTGTGT
CACGACTTTTGCCTCAAGAAGAACTCGGCCTATGCCATCACCCAGGGCAACTCGTGCTGGTGCTCCGACTACACC
CCCGCCAAGGGCAAGCAGGTCGACATGTCCGAGTGCAACAAGCCGTGCCCGGCCTATCCCGACGAGAAGTGCGGA
GGCCAAGGCGTCTTCGGATACATCGCCCTCGGCGGCGCCCTGCCGTCCGGCACAAAGGGCGACCCGGAGCCCGAA
CCGACTCCGTCGCCGACGTCAAAGGTGAGTTTCTCTGCTATGCTCTTTCCATCGCCAGCCCTCGCATCCTCGCCC
TCGCGAATTCTCCATCCGCTGCTGCGCCCACGGTCCTCGAGCTGCGCTCGGACCGACCTTGCTTGGCTTTTGCTC
GTTTTCTTCTCCCACGCTCCCTTGAGCCCCGCCGCCCCGTCCACCCGACCGACCTGCTGCCCCCGGGCGGCGGCG
TTTCTACGCCCCTCGGCCCGGCACACTCCCGTGCTGTCGCCGCTCCGGTGCCGGCTCCTTTGTCACTTTTCTGTC
GATCGGCTATTTGTGGTGAGACGGCAGGGCTTATGTGTCTGATCCCCCCAGGACGAGACTCCCACGGCGACGGCG
ACGGTGACCAAAACTGTGCAGGACACAGTAACTCCTCAGCCGCCGCCGCCCCCTCCATCAGCTAGCTCCAGTAGT
GGCCCGCCTGTACGACCTGTTTTCCCTTGTCTGTTCTGCGTGTGCCTGTTTTCTCGTCTCGCTCGCGATGCTCGA
GGTTGATTTTGTGCTTGGCGCTCCCGGCCGGGACGACAGAGAGGGAGATGGGAGATGAATGCTAACGTCGACTCG
TCAGCAGCACAAGACGGAAGAGACGCACGTCAGCAGCGCCAGCAAGAGCAGCATTGAGGCGCCCACCGTCAGCGA
GCCCCCCGCGCCCGCGACATCCATCATCCAGACCATCGTCGCCGGCGGCACCGTCCAGACAGTCACCGTCATCCC
GACGCAGTCGACCGTCTCGGCCGGCGTCAAGGACTCGACCGACGTCACGCCCGGCAGGAGCGGGCTCGGCACCGG
AGGCGTCGCGGGCATCGTGGCCGCCATCGCCGTCGTCTTGGCCGCCGCCGCCATGGCCCTGTTCTTCTACTTCCA
GCGCAAGAAGCGGACGGAGGAAGACTTCCGCGACGACCCCAGCGCCCGCGGAAGCTCGTCGGGCATGCTGGGCCG
GCCCGAGATGTCGGGCATCCCCGGCTCGCCCGGCTCGACGGGCAACCGCAGCAGCATGCTCCAGATCGACCCGCG
CATGGACCCGTTCAAGCAGGGGCTGTACGCCCGCAGCGGCAGCCACGAGAGCATCAACACGCTCGGCGACGAGCA
CGACTACTCGAGACGCATCCAGCCGCCCAAGGTGCTGCGGGCCACCAACCCCGACCCGACCGAGGACTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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