© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|173 |
| Gene name | |
| Location | Contig_103:34..588 |
| Strand | + |
| Gene length (bp) | 554 |
| Transcript length (bp) | 462 |
| Coding sequence length (bp) | 462 |
| Protein length (aa) | 154 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04084 | ORC2 | Origin recognition complex subunit 2 | 9.4E-57 | 1 | 143 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09142|ORC2_SCHPO | Origin recognition complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=orc2 PE=1 SV=1 | 1 | 152 | 2.0E-27 |
| sp|P32833|ORC2_YEAST | Origin recognition complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ORC2 PE=1 SV=2 | 1 | 152 | 4.0E-17 |
| sp|Q13416|ORC2_HUMAN | Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1 SV=2 | 1 | 149 | 5.0E-14 |
| sp|Q91628|ORC2_XENLA | Origin recognition complex subunit 2 OS=Xenopus laevis GN=orc2 PE=2 SV=1 | 1 | 149 | 3.0E-13 |
| sp|Q24168|ORC2_DROME | Origin recognition complex subunit 2 OS=Drosophila melanogaster GN=Orc2 PE=1 SV=2 | 1 | 150 | 1.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09142|ORC2_SCHPO | Origin recognition complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=orc2 PE=1 SV=1 | 1 | 152 | 2.0E-27 |
| sp|P32833|ORC2_YEAST | Origin recognition complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ORC2 PE=1 SV=2 | 1 | 152 | 4.0E-17 |
| sp|Q13416|ORC2_HUMAN | Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1 SV=2 | 1 | 149 | 5.0E-14 |
| sp|Q91628|ORC2_XENLA | Origin recognition complex subunit 2 OS=Xenopus laevis GN=orc2 PE=2 SV=1 | 1 | 149 | 3.0E-13 |
| sp|Q24168|ORC2_DROME | Origin recognition complex subunit 2 OS=Drosophila melanogaster GN=Orc2 PE=1 SV=2 | 1 | 150 | 1.0E-12 |
| sp|Q38899|ORC2_ARATH | Origin of replication complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1 | 1 | 151 | 1.0E-12 |
| sp|Q60862|ORC2_MOUSE | Origin recognition complex subunit 2 OS=Mus musculus GN=Orc2 PE=1 SV=1 | 1 | 149 | 3.0E-12 |
| sp|Q75PQ8|ORC2_RAT | Origin recognition complex subunit 2 OS=Rattus norvegicus GN=Orc2 PE=2 SV=1 | 1 | 138 | 5.0E-12 |
| sp|A6QNM3|ORC2_BOVIN | Origin recognition complex subunit 2 OS=Bos taurus GN=ORC2 PE=2 SV=2 | 1 | 150 | 2.0E-11 |
| sp|Q10QS7|ORC2_ORYSJ | Origin of replication complex subunit 2 OS=Oryza sativa subsp. japonica GN=ORC2 PE=2 SV=1 | 1 | 151 | 4.0E-11 |
| sp|B8APQ0|ORC2_ORYSI | Origin of replication complex subunit 2 OS=Oryza sativa subsp. indica GN=OsI_10291 PE=3 SV=1 | 1 | 151 | 4.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0000808 | origin recognition complex | Yes |
| GO:0006260 | DNA replication | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043226 | organelle | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear export signal | 0.4838 | 0.4976 | 0.1462 | 0.1552 | 0.1552 | 0.0093 | 0.2182 | 0.3389 | 0.2365 | 0.0004 |
| Orthofinder run ID | 4 |
| Orthogroup | 1791 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|173 LLWDVGLRSAFNFLFHDCTTFAPLAAELDVVDDVHDLLGRRARRVHGREGVAFVLRSLPENARNLFRLLVGEVLV AADDESAADEPAAVEYRMVYNKAVEEFICTSEMAFRTLLKEFHDHQIITSRKDAIGTELLSVPFPKEELEAMLED LMA* |
| Coding | >Hirsu2|173 CTGCTGTGGGACGTCGGCCTGCGCTCCGCCTTCAACTTCCTCTTCCACGACTGCACCACCTTCGCGCCCCTGGCG GCCGAGCTCGACGTCGTCGACGACGTCCACGACCTGCTCGGCCGCCGCGCCCGCCGCGTCCACGGCCGCGAGGGC GTCGCCTTCGTCCTCCGCAGCCTGCCCGAGAACGCCCGCAACCTCTTCCGGCTGCTGGTCGGCGAGGTCCTCGTC GCCGCCGACGACGAGTCCGCCGCCGACGAGCCCGCCGCCGTCGAGTACAGGATGGTCTACAACAAGGCCGTCGAG GAGTTCATCTGCACCTCCGAGATGGCCTTTCGCACCCTGCTCAAGGAGTTCCACGACCACCAGATCATCACGAGC CGGAAAGACGCCATCGGGACCGAGCTGCTGAGCGTGCCCTTCCCCAAGGAGGAGCTGGAGGCCATGCTGGAAGAC CTGATGGCCTAG |
| Transcript | >Hirsu2|173 CTGCTGTGGGACGTCGGCCTGCGCTCCGCCTTCAACTTCCTCTTCCACGACTGCACCACCTTCGCGCCCCTGGCG GCCGAGCTCGACGTCGTCGACGACGTCCACGACCTGCTCGGCCGCCGCGCCCGCCGCGTCCACGGCCGCGAGGGC GTCGCCTTCGTCCTCCGCAGCCTGCCCGAGAACGCCCGCAACCTCTTCCGGCTGCTGGTCGGCGAGGTCCTCGTC GCCGCCGACGACGAGTCCGCCGCCGACGAGCCCGCCGCCGTCGAGTACAGGATGGTCTACAACAAGGCCGTCGAG GAGTTCATCTGCACCTCCGAGATGGCCTTTCGCACCCTGCTCAAGGAGTTCCACGACCACCAGATCATCACGAGC CGGAAAGACGCCATCGGGACCGAGCTGCTGAGCGTGCCCTTCCCCAAGGAGGAGCTGGAGGCCATGCTGGAAGAC CTGATGGCCTAG |
| Gene | >Hirsu2|173 CTGCTGTGGGACGTCGGCCTGCGCTCCGCCTTCAACTTCCTCTTCCACGACTGCACCACCTTCGCGCCCCTGGCG GCCGAGCTCGACGTCGTCGACGACGTCCACGACCTGCTCGGCCGCCGCGCCCGCCGCGTCCACGGCCGCGAGGGC GTCGCCTTCGTCCTCCGCAGCCTGCCCGAGAACGCCCGCAACCTCTTCCGGCTGCTGGTCGGCGAGGTCCTCGTC GCCGCCGACGACGAGTCCGCCGCCGACGAGCCCGCCGCCGTCGAGTACAGGATGGTCTACAACAAGGCCGTCGAG GAGTTCATCTGCACCTCCGAGATGGCCTTTCGCACCCTGCTCAAGGAGTATGTCTCAGCCCCGACCGAAACGATC GTTAAAATGGCCAGCCCCCTCCCCGTTTGCTGCCCGTGCGTGTCTTGCTGACCCGGCGCTGCAGGTTCCACGACC ACCAGATCATCACGAGCCGGAAAGACGCCATCGGGACCGAGCTGCTGAGCGTGCCCTTCCCCAAGGAGGAGCTGG AGGCCATGCTGGAAGACCTGATGGCCTAG |